Wall clock time and date at job start Tue Mar 31 2020 04:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86796 * 120.00019 * 2 1 4 4 H 1.48503 * 109.47417 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47151 * 300.00019 * 3 2 1 6 6 H 1.48502 * 109.47138 * 60.00300 * 3 2 1 7 7 C 1.39894 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99611 * 196.81496 * 7 2 1 9 9 C 1.41141 * 120.00098 * 16.81793 * 7 2 1 10 10 C 1.40873 * 120.16106 * 25.37083 * 9 7 2 11 11 C 1.36354 * 119.82850 * 180.27330 * 10 9 7 12 12 C 1.39508 * 120.16862 * 359.45843 * 11 10 9 13 13 N 1.39139 * 119.83861 * 180.27624 * 12 11 10 14 14 C 1.34781 * 120.00015 * 40.97444 * 13 12 11 15 15 S 1.71199 * 119.99826 * 5.74545 * 14 13 12 16 16 N 1.34776 * 120.00048 * 185.74753 * 14 13 12 17 17 C 1.46495 * 119.99866 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.46986 * 179.97438 * 17 16 14 19 19 C 1.38245 * 119.97578 * 269.72459 * 18 17 16 20 20 C 1.38201 * 120.02588 * 179.72716 * 19 18 17 21 21 C 1.38462 * 119.96946 * 0.56842 * 20 19 18 22 22 F 1.35101 * 120.02175 * 179.68399 * 21 20 19 23 23 C 1.38457 * 119.95427 * 359.71057 * 21 20 19 24 24 C 1.38200 * 119.97014 * 359.97438 * 23 21 20 25 25 C 1.39507 * 120.32487 * 0.25590 * 12 11 10 26 26 C 1.36352 * 120.16855 * 0.02562 * 25 12 11 27 27 H 0.96995 * 119.99797 * 359.97438 * 1 2 3 28 28 H 1.08006 * 120.08730 * 0.02562 * 10 9 7 29 29 H 1.08007 * 119.91645 * 179.73678 * 11 10 9 30 30 H 0.97000 * 120.00418 * 220.97629 * 13 12 11 31 31 H 0.96998 * 119.99856 * 0.02562 * 16 14 13 32 32 H 1.09000 * 109.47635 * 300.00172 * 17 16 14 33 33 H 1.08997 * 109.47069 * 60.00237 * 17 16 14 34 34 H 1.07996 * 119.98404 * 359.97438 * 19 18 17 35 35 H 1.07993 * 120.01421 * 180.25954 * 20 19 18 36 36 H 1.08002 * 120.01527 * 179.97438 * 23 21 20 37 37 H 1.07999 * 119.98595 * 180.02562 * 24 23 21 38 38 H 1.08001 * 119.91402 * 180.02562 * 25 12 11 39 39 H 1.08003 * 120.08428 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7029 1.3464 0.0006 5 1 1.8841 2.3964 -1.2124 6 1 1.8841 2.3964 1.2126 7 6 2.0083 -1.2115 -0.0005 8 1 3.0537 -1.2316 0.2700 9 6 1.3479 -2.4075 -0.3547 10 6 0.2148 -2.3695 -1.1908 11 6 -0.4214 -3.5286 -1.5242 12 6 0.0539 -4.7510 -1.0487 13 7 -0.5971 -5.9300 -1.3978 14 6 -1.0462 -6.1046 -2.6566 15 16 -0.6881 -4.9428 -3.8619 16 7 -1.7772 -7.1937 -2.9663 17 6 -2.2658 -7.3831 -4.3343 18 6 -3.0491 -8.6680 -4.4146 19 6 -2.4065 -9.8500 -4.7328 20 6 -3.1227 -11.0299 -4.8012 21 6 -4.4866 -11.0259 -4.5623 22 9 -5.1890 -12.1777 -4.6352 23 6 -5.1302 -9.8406 -4.2494 24 6 -4.4107 -8.6631 -4.1752 25 6 1.1790 -4.7970 -0.2251 26 6 1.8222 -3.6457 0.1214 27 1 -0.4849 0.8400 0.0004 28 1 -0.1516 -1.4243 -1.5636 29 1 -1.2928 -3.5007 -2.1617 30 1 -0.7278 -6.6264 -0.7354 31 1 -1.9804 -7.8517 -2.2833 32 1 -2.9090 -6.5472 -4.6095 33 1 -1.4192 -7.4307 -5.0192 34 1 -1.3436 -9.8518 -4.9242 35 1 -2.6198 -11.9538 -5.0457 36 1 -6.1940 -9.8363 -4.0633 37 1 -4.9123 -7.7384 -3.9307 38 1 1.5415 -5.7470 0.1389 39 1 2.6934 -3.6830 0.7587 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007378859.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:33 Heat of formation + Delta-G solvation = 22.245213 kcal Electronic energy + Delta-G solvation = -23417.055371 eV Core-core repulsion = 19750.907696 eV Total energy + Delta-G solvation = -3666.147675 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.090 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.32206 -39.90032 -38.95407 -37.23426 -35.14260 -33.28855 -31.62241 -31.47064 -29.55285 -29.01831 -26.45154 -24.74186 -23.53083 -23.50982 -22.02289 -21.19657 -20.57823 -18.27514 -18.04685 -17.41733 -17.36234 -16.85793 -16.02022 -15.75781 -15.47700 -15.12941 -14.86414 -14.77035 -14.23843 -14.03377 -13.97408 -13.77348 -13.26041 -12.79276 -12.66700 -12.21326 -12.10464 -12.02603 -11.81454 -11.48087 -11.28008 -11.13767 -10.93240 -10.61116 -10.58768 -9.86560 -9.59998 -9.57534 -9.24143 -9.16251 -9.05413 -7.72804 -7.47527 -7.04902 -6.82408 -6.31749 -4.36163 0.54732 0.75385 1.67663 2.40824 2.79114 2.89332 3.07460 3.12123 3.13518 3.22555 3.33093 3.79243 3.90661 3.97235 4.22327 4.24937 4.43872 4.59996 4.79221 4.79684 5.28226 5.38698 5.47479 5.64229 5.64500 5.70019 5.72990 6.05456 6.06372 6.20172 6.34613 6.39380 6.54158 6.95971 7.01010 7.08457 7.19249 7.27815 7.57536 7.64855 7.91517 8.04417 8.17427 8.25555 8.62073 8.84446 8.94870 10.11928 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.034953 B = 0.002044 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.879641 B =13692.739962 C =13921.013523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.449 4.449 8 H 0.080 0.920 9 C 0.119 3.881 10 C -0.163 4.163 11 C -0.038 4.038 12 C -0.038 4.038 13 N -0.589 5.589 14 C 0.543 3.457 15 S -0.641 6.641 16 N -0.697 5.697 17 C 0.174 3.826 18 C -0.120 4.120 19 C -0.069 4.069 20 C -0.157 4.157 21 C 0.104 3.896 22 F -0.140 7.140 23 C -0.156 4.156 24 C -0.068 4.068 25 C -0.081 4.081 26 C -0.226 4.226 27 H 0.282 0.718 28 H 0.121 0.879 29 H 0.111 0.889 30 H 0.390 0.610 31 H 0.392 0.608 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.087 0.913 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.839 -18.037 -5.057 20.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.200 1.200 7 C -0.478 4.478 8 H 0.098 0.902 9 C 0.116 3.884 10 C -0.183 4.183 11 C -0.060 4.060 12 C -0.131 4.131 13 N -0.208 5.208 14 C 0.184 3.816 15 S -0.512 6.512 16 N -0.330 5.330 17 C 0.050 3.950 18 C -0.121 4.121 19 C -0.087 4.087 20 C -0.176 4.176 21 C 0.085 3.915 22 F -0.118 7.118 23 C -0.175 4.175 24 C -0.087 4.087 25 C -0.102 4.102 26 C -0.246 4.246 27 H 0.093 0.907 28 H 0.138 0.862 29 H 0.129 0.871 30 H 0.225 0.775 31 H 0.227 0.773 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.105 0.895 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.830 -17.070 -5.959 20.121 hybrid contribution -0.172 -0.862 1.247 1.525 sum -9.002 -17.932 -4.712 20.611 Atomic orbital electron populations 1.69853 1.07631 1.29411 1.33815 1.25976 0.94792 1.01544 0.92205 0.86236 0.81010 0.80749 0.78630 1.18302 1.19523 1.19979 1.19665 0.97834 0.91200 1.39126 0.90167 1.17732 0.91052 0.91972 0.87654 1.20873 0.99441 0.96778 1.01227 1.20500 0.99097 0.90737 0.95646 1.16885 1.00382 0.82910 1.12882 1.41985 1.53013 1.18859 1.06916 1.22353 0.82905 0.87703 0.88599 1.93325 1.75531 1.43162 1.39220 1.44840 1.53275 1.22189 1.12707 1.20388 0.98620 0.93872 0.82099 1.20071 0.94276 0.95226 1.02533 1.21052 1.00442 0.90856 0.96379 1.21186 0.92452 1.00070 1.03846 1.17815 0.90154 0.81964 1.01569 1.91515 1.78861 1.47660 1.93775 1.21193 1.01308 0.91480 1.03536 1.21065 0.93317 0.97981 0.96329 1.19969 0.93763 0.97079 0.99367 1.20472 1.03791 0.92556 1.07787 0.90695 0.86152 0.87135 0.77471 0.77278 0.88780 0.88824 0.84512 0.84480 0.84455 0.84466 0.89496 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.89 10.95 55.55 0.61 -19.28 16 2 C 0.07 1.82 5.15 -17.34 -0.09 1.74 16 3 Si 0.91 18.41 29.59 -169.99 -5.03 13.38 16 4 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.45 -11.68 9.04 -37.86 -0.34 -12.02 16 8 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 9 C 0.12 3.13 5.57 -106.80 -0.59 2.53 16 10 C -0.16 -4.27 8.63 -39.26 -0.34 -4.61 16 11 C -0.04 -0.92 7.76 -39.79 -0.31 -1.23 16 12 C -0.04 -0.81 5.94 -83.60 -0.50 -1.30 16 13 N -0.59 -9.67 5.29 -11.28 -0.06 -9.73 16 14 C 0.54 8.79 7.73 -86.91 -0.67 8.12 16 15 S -0.64 -13.61 24.96 -107.50 -2.68 -16.29 16 16 N -0.70 -7.71 5.55 -63.22 -0.35 -8.06 16 17 C 0.17 1.73 5.25 -5.20 -0.03 1.70 16 18 C -0.12 -0.93 5.25 -104.61 -0.55 -1.48 16 19 C -0.07 -0.49 9.70 -39.59 -0.38 -0.87 16 20 C -0.16 -1.12 10.03 -39.51 -0.40 -1.51 16 21 C 0.10 0.84 7.30 -39.42 -0.29 0.56 16 22 F -0.14 -1.26 17.27 2.25 0.04 -1.23 16 23 C -0.16 -1.13 10.03 -39.51 -0.40 -1.53 16 24 C -0.07 -0.49 9.70 -39.59 -0.38 -0.88 16 25 C -0.08 -1.73 9.90 -39.79 -0.39 -2.12 16 26 C -0.23 -5.35 9.74 -39.26 -0.38 -5.73 16 27 H 0.28 6.49 8.30 -40.82 -0.34 6.16 16 28 H 0.12 3.32 6.18 -52.48 -0.32 2.99 16 29 H 0.11 2.68 6.16 -47.11 -0.29 2.39 16 30 H 0.39 4.87 8.84 -40.82 -0.36 4.50 16 31 H 0.39 3.25 8.48 -40.82 -0.35 2.90 16 32 H 0.09 1.04 7.94 -51.93 -0.41 0.63 16 33 H 0.09 1.03 7.93 -51.93 -0.41 0.62 16 34 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 35 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.09 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 LS Contribution 351.72 15.07 5.30 5.30 Total: -1.00 -30.81 351.72 -12.45 -43.26 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -4.23 Total: 11.28 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -6.04 Total: -18.64 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.20 Total: -37.07 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Atomic # 16 Polarization: -13.61 SS G_CDS: -2.68 Total: -16.29 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.81 -12.45 -43.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007378859.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.509 kcal (2) G-P(sol) polarization free energy of solvation -30.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds