Wall clock time and date at job start Tue Mar 31 2020 04:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86796 * 120.00019 * 2 1 4 4 H 1.48503 * 109.47417 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47151 * 300.00019 * 3 2 1 6 6 H 1.48502 * 109.47138 * 60.00300 * 3 2 1 7 7 C 1.39894 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99611 * 196.81496 * 7 2 1 9 9 C 1.41141 * 120.00098 * 16.81793 * 7 2 1 10 10 C 1.40873 * 120.16106 * 25.37083 * 9 7 2 11 11 C 1.36354 * 119.82850 * 180.27330 * 10 9 7 12 12 C 1.39508 * 120.16862 * 359.45843 * 11 10 9 13 13 N 1.39139 * 119.83861 * 180.27624 * 12 11 10 14 14 C 1.34781 * 120.00015 * 40.97444 * 13 12 11 15 15 S 1.71199 * 119.99826 * 5.74545 * 14 13 12 16 16 N 1.34776 * 120.00048 * 185.74753 * 14 13 12 17 17 C 1.46495 * 119.99866 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.46986 * 179.97438 * 17 16 14 19 19 C 1.38245 * 119.97578 * 269.72459 * 18 17 16 20 20 C 1.38201 * 120.02588 * 179.72716 * 19 18 17 21 21 C 1.38462 * 119.96946 * 0.56842 * 20 19 18 22 22 F 1.35101 * 120.02175 * 179.68399 * 21 20 19 23 23 C 1.38457 * 119.95427 * 359.71057 * 21 20 19 24 24 C 1.38200 * 119.97014 * 359.97438 * 23 21 20 25 25 C 1.39507 * 120.32487 * 0.25590 * 12 11 10 26 26 C 1.36352 * 120.16855 * 0.02562 * 25 12 11 27 27 H 0.96995 * 119.99797 * 359.97438 * 1 2 3 28 28 H 1.08006 * 120.08730 * 0.02562 * 10 9 7 29 29 H 1.08007 * 119.91645 * 179.73678 * 11 10 9 30 30 H 0.97000 * 120.00418 * 220.97629 * 13 12 11 31 31 H 0.96998 * 119.99856 * 0.02562 * 16 14 13 32 32 H 1.09000 * 109.47635 * 300.00172 * 17 16 14 33 33 H 1.08997 * 109.47069 * 60.00237 * 17 16 14 34 34 H 1.07996 * 119.98404 * 359.97438 * 19 18 17 35 35 H 1.07993 * 120.01421 * 180.25954 * 20 19 18 36 36 H 1.08002 * 120.01527 * 179.97438 * 23 21 20 37 37 H 1.07999 * 119.98595 * 180.02562 * 24 23 21 38 38 H 1.08001 * 119.91402 * 180.02562 * 25 12 11 39 39 H 1.08003 * 120.08428 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7029 1.3464 0.0006 5 1 1.8841 2.3964 -1.2124 6 1 1.8841 2.3964 1.2126 7 6 2.0083 -1.2115 -0.0005 8 1 3.0537 -1.2316 0.2700 9 6 1.3479 -2.4075 -0.3547 10 6 0.2148 -2.3695 -1.1908 11 6 -0.4214 -3.5286 -1.5242 12 6 0.0539 -4.7510 -1.0487 13 7 -0.5971 -5.9300 -1.3978 14 6 -1.0462 -6.1046 -2.6566 15 16 -0.6881 -4.9428 -3.8619 16 7 -1.7772 -7.1937 -2.9663 17 6 -2.2658 -7.3831 -4.3343 18 6 -3.0491 -8.6680 -4.4146 19 6 -2.4065 -9.8500 -4.7328 20 6 -3.1227 -11.0299 -4.8012 21 6 -4.4866 -11.0259 -4.5623 22 9 -5.1890 -12.1777 -4.6352 23 6 -5.1302 -9.8406 -4.2494 24 6 -4.4107 -8.6631 -4.1752 25 6 1.1790 -4.7970 -0.2251 26 6 1.8222 -3.6457 0.1214 27 1 -0.4849 0.8400 0.0004 28 1 -0.1516 -1.4243 -1.5636 29 1 -1.2928 -3.5007 -2.1617 30 1 -0.7278 -6.6264 -0.7354 31 1 -1.9804 -7.8517 -2.2833 32 1 -2.9090 -6.5472 -4.6095 33 1 -1.4192 -7.4307 -5.0192 34 1 -1.3436 -9.8518 -4.9242 35 1 -2.6198 -11.9538 -5.0457 36 1 -6.1940 -9.8363 -4.0633 37 1 -4.9123 -7.7384 -3.9307 38 1 1.5415 -5.7470 0.1389 39 1 2.6934 -3.6830 0.7587 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007378859.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:32 Heat of formation + Delta-G solvation = 6.362970 kcal Electronic energy + Delta-G solvation = -23417.744077 eV Core-core repulsion = 19750.907696 eV Total energy + Delta-G solvation = -3666.836381 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.090 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.96350 -40.87405 -40.19683 -38.71244 -36.56460 -34.96320 -32.42323 -32.17408 -31.40553 -30.68886 -27.60848 -26.26245 -24.93994 -24.08839 -23.02637 -22.80118 -22.17455 -19.52763 -19.21771 -18.97351 -18.61089 -17.50703 -17.15022 -16.76767 -16.67967 -16.57914 -15.96024 -15.82552 -15.66222 -15.13485 -14.91827 -14.54320 -14.51094 -14.29530 -13.91886 -13.69371 -13.49665 -13.28294 -13.10905 -12.77660 -12.71163 -12.56015 -12.27282 -12.13213 -11.99681 -11.64881 -11.37173 -11.02966 -10.50290 -10.13498 -9.79824 -9.53745 -9.15839 -8.78608 -8.63168 -8.04755 -6.27844 -0.09216 0.20513 0.22983 0.97397 1.12639 1.27614 1.40691 1.54297 1.55863 1.71713 2.22190 2.50228 2.76478 2.82759 3.21003 3.50388 3.69642 3.79319 3.92280 4.14498 4.25558 4.42442 4.55113 4.58600 4.63803 4.83620 4.93193 4.93517 5.07604 5.09788 5.14562 5.16553 5.19643 5.37631 5.44486 5.47303 5.74104 5.81534 5.82470 6.02236 6.14820 6.22854 6.38837 6.59810 6.73508 6.94996 7.06861 8.32846 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.034953 B = 0.002044 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.879641 B =13692.739962 C =13921.013523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.032 3.968 3 Si 0.982 3.018 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.263 1.263 7 C -0.487 4.487 8 H 0.080 0.920 9 C 0.088 3.912 10 C -0.189 4.189 11 C -0.044 4.044 12 C -0.019 4.019 13 N -0.582 5.582 14 C 0.573 3.427 15 S -0.736 6.736 16 N -0.661 5.661 17 C 0.176 3.824 18 C -0.121 4.121 19 C -0.066 4.066 20 C -0.157 4.157 21 C 0.092 3.908 22 F -0.148 7.148 23 C -0.158 4.158 24 C -0.068 4.068 25 C -0.076 4.076 26 C -0.238 4.238 27 H 0.288 0.712 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.417 0.583 31 H 0.414 0.586 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.147 0.853 38 H 0.131 0.869 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.060 -20.628 -4.480 22.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.183 4.183 3 Si 0.802 3.198 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.188 1.188 7 C -0.516 4.516 8 H 0.098 0.902 9 C 0.085 3.915 10 C -0.209 4.209 11 C -0.066 4.066 12 C -0.112 4.112 13 N -0.204 5.204 14 C 0.210 3.790 15 S -0.609 6.609 16 N -0.292 5.292 17 C 0.053 3.947 18 C -0.122 4.122 19 C -0.084 4.084 20 C -0.175 4.175 21 C 0.072 3.928 22 F -0.126 7.126 23 C -0.176 4.176 24 C -0.086 4.086 25 C -0.097 4.097 26 C -0.258 4.258 27 H 0.099 0.901 28 H 0.112 0.888 29 H 0.121 0.879 30 H 0.257 0.743 31 H 0.254 0.746 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.168 0.832 35 H 0.170 0.830 36 H 0.169 0.831 37 H 0.165 0.835 38 H 0.148 0.852 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.092 -19.756 -5.365 22.400 hybrid contribution -0.267 -0.388 0.986 1.092 sum -9.359 -20.144 -4.379 22.640 Atomic orbital electron populations 1.69912 1.09044 1.30557 1.34815 1.26813 0.95521 1.04698 0.91314 0.85162 0.79555 0.76201 0.78844 1.17926 1.19359 1.18773 1.19894 0.98103 0.92356 1.41286 0.90151 1.18051 0.91573 0.93460 0.88431 1.20744 1.00788 0.96630 1.02784 1.20516 0.98940 0.91555 0.95578 1.16805 0.99821 0.83530 1.11079 1.41593 1.52949 1.18279 1.07568 1.21708 0.82319 0.87587 0.87351 1.93648 1.78713 1.46620 1.41962 1.44814 1.49948 1.20373 1.14027 1.20417 0.98495 0.94934 0.80821 1.19827 0.94286 0.94230 1.03884 1.21178 1.01116 0.90425 0.95704 1.21366 0.92160 1.00749 1.03248 1.18071 0.90679 0.81977 1.02056 1.91498 1.79099 1.48139 1.93895 1.21356 1.02104 0.91106 1.03061 1.21173 0.93089 0.98431 0.95920 1.20309 0.92848 0.98138 0.98368 1.20715 1.04499 0.92569 1.08040 0.90118 0.88786 0.87875 0.74290 0.74614 0.89614 0.89363 0.83229 0.82952 0.83109 0.83508 0.85154 0.87381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.43 10.95 21.82 0.24 -43.19 16 2 C 0.03 1.64 5.15 85.23 0.44 2.08 16 3 Si 0.98 38.71 29.59 68.60 2.03 40.74 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 6 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 7 C -0.49 -26.32 9.04 23.38 0.21 -26.11 16 8 H 0.08 4.14 7.90 -2.91 -0.02 4.12 16 9 C 0.09 4.76 5.57 -21.28 -0.12 4.64 16 10 C -0.19 -10.39 8.63 22.48 0.19 -10.19 16 11 C -0.04 -2.17 7.76 22.14 0.17 -2.00 16 12 C -0.02 -0.76 5.94 38.59 0.23 -0.53 16 13 N -0.58 -17.32 5.29 -189.61 -1.00 -18.32 16 14 C 0.57 17.30 7.73 179.05 1.38 18.69 16 15 S -0.74 -31.48 24.96 -56.49 -1.41 -32.89 16 16 N -0.66 -12.48 5.55 -353.91 -1.97 -14.44 16 17 C 0.18 3.12 5.25 85.64 0.45 3.57 16 18 C -0.12 -1.54 5.25 -19.86 -0.10 -1.65 16 19 C -0.07 -0.73 9.70 22.26 0.22 -0.51 16 20 C -0.16 -1.80 10.03 22.31 0.22 -1.57 16 21 C 0.09 1.27 7.30 22.38 0.16 1.43 16 22 F -0.15 -2.41 17.27 44.97 0.78 -1.63 16 23 C -0.16 -1.88 10.03 22.31 0.22 -1.66 16 24 C -0.07 -0.79 9.70 22.26 0.22 -0.58 16 25 C -0.08 -3.08 9.90 22.14 0.22 -2.87 16 26 C -0.24 -11.22 9.74 22.48 0.22 -11.00 16 27 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 28 H 0.09 5.56 6.18 -2.91 -0.02 5.55 16 29 H 0.10 5.17 6.16 -6.32 -0.04 5.14 16 30 H 0.42 8.44 8.84 -92.71 -0.82 7.62 16 31 H 0.41 4.96 8.48 -92.71 -0.79 4.17 16 32 H 0.09 1.78 7.94 -2.39 -0.02 1.76 16 33 H 0.09 1.78 7.93 -2.39 -0.02 1.76 16 34 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 36 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 37 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 38 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 39 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -71.23 351.72 2.49 -68.74 By element: Atomic # 1 Polarization: 29.79 SS G_CDS: -0.51 Total: 29.27 kcal Atomic # 6 Polarization: -32.61 SS G_CDS: 4.34 Total: -28.27 kcal Atomic # 7 Polarization: -73.22 SS G_CDS: -2.73 Total: -75.95 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.78 Total: -1.63 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Atomic # 16 Polarization: -31.48 SS G_CDS: -1.41 Total: -32.89 kcal Total: -71.23 2.49 -68.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007378859.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.099 kcal (2) G-P(sol) polarization free energy of solvation -71.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds