Wall clock time and date at job start Tue Mar 31 2020 04:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86798 * 119.99724 * 2 1 4 4 H 1.48499 * 109.47332 * 270.00149 * 3 2 1 5 5 H 1.48497 * 109.47257 * 30.00798 * 3 2 1 6 6 H 1.48506 * 109.46928 * 150.00457 * 3 2 1 7 7 C 1.38617 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00063 * 359.97438 * 7 2 1 9 9 O 1.34807 * 120.00036 * 179.97438 * 7 2 1 10 10 C 1.35625 * 117.00150 * 184.80147 * 9 7 2 11 11 C 1.38713 * 120.15701 * 354.22411 * 10 9 7 12 12 C 1.38134 * 120.08329 * 180.30017 * 11 10 9 13 13 C 1.38508 * 120.40192 * 359.71642 * 12 11 10 14 14 C 1.37910 * 120.30952 * 359.97438 * 13 12 11 15 15 C 1.39653 * 119.91257 * 0.02562 * 14 13 12 16 16 C 1.47335 * 120.19747 * 180.02562 * 15 14 13 17 17 N 1.29827 * 119.99849 * 180.02562 * 16 15 14 18 18 N 1.40096 * 119.99879 * 179.97438 * 17 16 15 19 19 C 1.46504 * 119.99702 * 179.97438 * 18 17 16 20 20 C 1.50705 * 109.46777 * 179.97438 * 19 18 17 21 21 C 1.38245 * 120.00246 * 105.00346 * 20 19 18 22 22 C 1.38227 * 120.00791 * 179.97438 * 21 20 19 23 23 C 1.38256 * 120.02694 * 0.04222 * 22 21 20 24 24 C 1.38189 * 120.01710 * 359.97438 * 23 22 21 25 25 C 1.38326 * 120.00945 * 284.72843 * 20 19 18 26 26 Cl 1.73598 * 120.01394 * 359.97438 * 25 20 19 27 27 H 0.96996 * 120.00164 * 359.97438 * 1 2 3 28 28 H 1.07997 * 119.95703 * 0.02562 * 11 10 9 29 29 H 1.07998 * 119.79475 * 179.74525 * 12 11 10 30 30 H 1.08001 * 119.84557 * 179.97438 * 13 12 11 31 31 H 1.08002 * 120.04399 * 179.97438 * 14 13 12 32 32 H 1.07995 * 120.00440 * 359.97438 * 16 15 14 33 33 H 0.96998 * 120.00235 * 0.02562 * 18 17 16 34 34 H 1.08992 * 109.47085 * 60.00352 * 19 18 17 35 35 H 1.08997 * 109.47271 * 299.99890 * 19 18 17 36 36 H 1.07991 * 119.99272 * 359.97438 * 21 20 19 37 37 H 1.07997 * 119.98273 * 180.02562 * 22 21 20 38 38 H 1.08001 * 119.98869 * 179.97438 * 23 22 21 39 39 H 1.08001 * 120.00640 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0465 -1.4000 5 1 1.4472 2.6526 0.7002 6 1 3.5473 1.4402 0.7000 7 6 2.0089 -1.2005 -0.0005 8 1 1.4689 -2.1358 -0.0005 9 8 3.3569 -1.2005 -0.0011 10 6 3.9726 -2.4046 -0.1027 11 6 3.2258 -3.5733 -0.0797 12 6 3.8550 -4.7992 -0.1771 13 6 5.2324 -4.8719 -0.3041 14 6 5.9903 -3.7202 -0.3352 15 6 5.3676 -2.4739 -0.2377 16 6 6.1712 -1.2394 -0.2708 17 7 5.5884 -0.0829 -0.1793 18 7 6.3525 1.0909 -0.2102 19 6 5.6948 2.3959 -0.1076 20 6 6.7324 3.4873 -0.1654 21 6 6.8813 4.2394 -1.3158 22 6 7.8326 5.2408 -1.3688 23 6 8.6364 5.4902 -0.2718 24 6 8.4888 4.7388 0.8785 25 6 7.5322 3.7404 0.9344 26 17 7.3406 2.8016 2.3820 27 1 -0.4850 0.8400 0.0004 28 1 2.1514 -3.5249 0.0189 29 1 3.2694 -5.7063 -0.1546 30 1 5.7150 -5.8351 -0.3792 31 1 7.0640 -3.7819 -0.4339 32 1 7.2450 -1.2966 -0.3702 33 1 7.3169 1.0396 -0.3003 34 1 5.1554 2.4576 0.8375 35 1 4.9944 2.5158 -0.9341 36 1 6.2542 4.0445 -2.1731 37 1 7.9483 5.8284 -2.2675 38 1 9.3798 6.2725 -0.3140 39 1 9.1164 4.9341 1.7354 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008811297.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:12 Heat of formation + Delta-G solvation = 75.062454 kcal Electronic energy + Delta-G solvation = -24673.090737 eV Core-core repulsion = 20994.816894 eV Total energy + Delta-G solvation = -3678.273844 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.71275 -39.09703 -36.56254 -36.52529 -36.15178 -33.58765 -32.31271 -31.14812 -30.87703 -29.35585 -28.51595 -25.36135 -25.10425 -22.97785 -22.57193 -21.60626 -21.32984 -19.92436 -17.74234 -17.50214 -16.99129 -16.29641 -15.93786 -15.77146 -15.13388 -14.69897 -14.41490 -14.09734 -13.84609 -13.72927 -13.63994 -13.55904 -13.27366 -13.04717 -12.55928 -12.24008 -12.02079 -11.84367 -11.70894 -11.67168 -11.59474 -10.94413 -10.91059 -10.75487 -10.69635 -10.63324 -9.94329 -9.49558 -9.24738 -9.03558 -8.93725 -8.81994 -8.50955 -7.56039 -6.83275 -6.34858 -3.98616 0.82597 0.94479 1.75087 2.00686 2.37541 3.15914 3.30357 3.32545 3.35127 3.59438 3.64580 4.36365 4.46480 4.51385 4.66923 4.69407 4.93381 4.97457 5.07218 5.20632 5.30757 5.39517 5.52778 5.59665 5.65214 5.72997 5.86850 5.92039 5.97045 6.09054 6.20195 6.22815 6.27198 6.49375 6.59629 6.73059 6.83304 7.22152 7.26462 7.36959 7.55465 7.67398 7.85311 8.09760 9.01251 9.07297 9.68532 10.70907 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.012161 B = 0.004047 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.863813 B = 6917.363132 C = 8331.244992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.066 3.934 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.224 1.224 7 C -0.388 4.388 8 H 0.104 0.896 9 O -0.172 6.172 10 C 0.177 3.823 11 C -0.226 4.226 12 C -0.069 4.069 13 C -0.212 4.212 14 C -0.057 4.057 15 C -0.120 4.120 16 C 0.064 3.936 17 N -0.190 5.190 18 N -0.663 5.663 19 C 0.196 3.804 20 C -0.093 4.093 21 C -0.089 4.089 22 C -0.119 4.119 23 C -0.106 4.106 24 C -0.115 4.115 25 C -0.022 4.022 26 Cl -0.056 7.056 27 H 0.278 0.722 28 H 0.133 0.867 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.097 0.903 33 H 0.366 0.634 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.593 7.607 -0.829 19.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.147 1.147 7 C -0.464 4.464 8 H 0.121 0.879 9 O -0.072 6.072 10 C 0.121 3.879 11 C -0.245 4.245 12 C -0.089 4.089 13 C -0.231 4.231 14 C -0.078 4.078 15 C -0.124 4.124 16 C -0.146 4.146 17 N 0.002 4.998 18 N -0.401 5.401 19 C 0.071 3.929 20 C -0.095 4.095 21 C -0.108 4.108 22 C -0.137 4.137 23 C -0.124 4.124 24 C -0.134 4.134 25 C -0.049 4.049 26 Cl -0.027 7.027 27 H 0.088 0.912 28 H 0.151 0.849 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.114 0.886 33 H 0.203 0.797 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 16.449 8.593 -0.547 18.567 hybrid contribution 1.235 0.292 -0.042 1.270 sum 17.685 8.885 -0.589 19.800 Atomic orbital electron populations 1.69673 1.05797 1.28461 1.47836 1.24457 0.94919 0.99082 0.95303 0.86478 0.81818 0.80873 0.79147 1.20402 1.21935 1.14721 1.20863 0.77605 0.96472 1.51444 0.87880 1.83781 1.21450 1.24628 1.77364 1.19187 0.90814 0.85730 0.92212 1.21248 1.01140 0.91889 1.10234 1.20867 0.94359 0.96636 0.97004 1.20501 0.93953 0.97179 1.11494 1.20649 0.98356 0.90762 0.98020 1.17468 0.89807 0.91071 1.14086 1.23700 0.95901 0.90638 1.04377 1.74827 1.23122 0.92799 1.09008 1.47803 1.05312 1.00900 1.86101 1.20012 0.91822 0.78396 1.02642 1.20011 0.97838 0.98707 0.92966 1.21180 0.97897 0.94794 0.96913 1.21263 0.95699 0.97793 0.98909 1.21148 0.99384 0.99207 0.92658 1.21077 0.97850 0.95164 0.99309 1.20966 0.98697 0.96063 0.89172 1.98410 1.96687 1.71775 1.35785 0.91246 0.84949 0.87339 0.87377 0.86780 0.88614 0.79719 0.90557 0.91765 0.84735 0.85207 0.85090 0.84883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.89 13.96 55.48 0.77 -25.11 16 2 C 0.07 1.88 5.49 -17.52 -0.10 1.78 16 3 Si 0.89 21.91 26.99 -169.99 -4.59 17.32 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.22 -5.36 4.62 56.52 0.26 -5.10 16 7 C -0.39 -11.02 9.94 30.87 0.31 -10.71 16 8 H 0.10 2.99 5.44 -52.48 -0.29 2.70 16 9 O -0.17 -4.52 6.46 0.50 0.00 -4.52 16 10 C 0.18 4.14 6.66 -38.62 -0.26 3.89 16 11 C -0.23 -4.91 9.16 -39.44 -0.36 -5.27 16 12 C -0.07 -1.25 10.03 -39.52 -0.40 -1.65 16 13 C -0.21 -3.50 10.03 -39.60 -0.40 -3.89 16 14 C -0.06 -0.96 9.79 -39.17 -0.38 -1.34 16 15 C -0.12 -2.42 5.88 -104.89 -0.62 -3.04 16 16 C 0.06 1.20 10.75 -14.70 -0.16 1.05 16 17 N -0.19 -3.93 9.12 32.13 0.29 -3.64 16 18 N -0.66 -11.44 6.54 -11.65 -0.08 -11.52 16 19 C 0.20 3.25 4.68 -5.19 -0.02 3.23 16 20 C -0.09 -1.23 5.25 -104.58 -0.55 -1.78 16 21 C -0.09 -0.98 9.67 -39.58 -0.38 -1.36 16 22 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 23 C -0.11 -0.87 10.04 -39.59 -0.40 -1.27 16 24 C -0.12 -1.12 9.83 -39.55 -0.39 -1.51 16 25 C -0.02 -0.27 6.31 -39.50 -0.25 -0.52 16 26 Cl -0.06 -0.75 27.56 -51.86 -1.43 -2.18 16 27 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.13 3.02 5.64 -52.49 -0.30 2.72 16 29 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 30 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.10 1.47 8.02 -52.49 -0.42 1.05 16 33 H 0.37 5.50 8.42 -182.60 -1.54 3.96 16 34 H 0.08 1.41 6.22 -51.93 -0.32 1.09 16 35 H 0.06 1.13 6.99 -51.93 -0.36 0.77 16 36 H 0.13 1.36 8.00 -52.49 -0.42 0.94 16 37 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 348.43 15.07 5.25 5.25 Total: -1.00 -31.22 348.43 -9.98 -41.20 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -5.46 Total: 7.03 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -4.75 Total: -23.83 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.99 Total: -40.27 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: 0.00 Total: -4.52 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.59 Total: 17.32 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.43 Total: -2.18 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.22 -9.98 -41.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008811297.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.261 kcal (2) G-P(sol) polarization free energy of solvation -31.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds