Wall clock time and date at job start Tue Mar 31 2020 04:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00190 * 2 1 4 4 H 1.48507 * 109.47022 * 239.99998 * 3 2 1 5 5 H 1.48501 * 109.47123 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47110 * 120.00502 * 3 2 1 7 7 C 1.37884 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00245 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99957 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47205 * 180.02562 * 9 7 2 11 11 C 1.34768 * 119.99991 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00506 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.00009 * 180.02562 * 11 10 9 14 14 O 1.45201 * 109.47150 * 180.02562 * 13 11 10 15 15 C 1.34670 * 116.99734 * 180.02562 * 14 13 11 16 16 O 1.21395 * 119.99997 * 359.97438 * 15 14 13 17 17 C 1.48236 * 119.99784 * 179.97438 * 15 14 13 18 18 C 1.36572 * 120.74159 * 173.99285 * 17 15 14 19 19 C 1.46147 * 119.44788 * 179.97438 * 18 17 15 20 20 O 1.21818 * 119.50441 * 179.97438 * 19 18 17 21 21 N 1.34436 * 120.98759 * 359.97421 * 19 18 17 22 22 H 0.97004 * 119.33661 * 180.02562 * 21 19 18 23 23 C 1.37840 * 121.33406 * 0.04654 * 21 19 18 24 24 C 1.39293 * 120.42722 * 180.02562 * 23 21 19 25 25 C 1.37751 * 119.82595 * 179.20344 * 24 23 21 26 26 C 1.38854 * 120.63115 * 0.72423 * 25 24 23 27 27 C 1.36580 * 120.52862 * 359.52904 * 26 25 24 28 28 C 1.39818 * 119.82754 * 359.97175 * 27 26 25 29 29 H 0.96998 * 119.99432 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47005 * 59.99833 * 9 7 2 31 31 H 1.09003 * 109.46785 * 300.00285 * 9 7 2 32 32 H 0.97005 * 119.99628 * 0.02562 * 10 9 7 33 33 H 1.08997 * 109.47723 * 59.99654 * 13 11 10 34 34 H 1.09003 * 109.47016 * 299.99524 * 13 11 10 35 35 H 1.07999 * 120.27471 * 359.95094 * 18 17 15 36 36 H 1.07993 * 120.08919 * 359.94601 * 24 23 21 37 37 H 1.08004 * 119.68729 * 180.22644 * 25 24 23 38 38 H 1.08002 * 119.73307 * 179.49854 * 26 25 24 39 39 H 1.08001 * 120.08650 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6128 -0.0005 11 6 1.7537 -4.8834 -0.0011 12 8 0.5613 -5.1050 -0.0011 13 6 2.7329 -6.0289 -0.0005 14 8 2.0069 -7.2863 -0.0018 15 6 2.7404 -8.4157 -0.0010 16 8 3.9526 -8.3522 0.0004 17 6 2.0673 -9.7365 -0.0017 18 6 2.7906 -10.8885 -0.1237 19 6 2.0981 -12.1755 -0.1204 20 8 2.7422 -13.2037 -0.2296 21 7 0.7609 -12.2416 0.0014 22 1 0.3259 -13.1086 0.0010 23 6 -0.0047 -11.1022 0.1263 24 6 -1.3890 -11.1927 0.2519 25 6 -2.1406 -10.0469 0.3925 26 6 -1.5331 -8.7983 0.3955 27 6 -0.1779 -8.6858 0.2685 28 6 0.6060 -9.8358 0.1349 29 1 -0.4849 0.8401 -0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 3.1567 -3.4355 -0.0002 33 1 3.3590 -5.9713 0.8899 34 1 3.3602 -5.9710 -0.8900 35 1 3.8654 -10.8488 -0.2221 36 1 -1.8707 -12.1592 0.2511 37 1 -3.2134 -10.1198 0.4934 38 1 -2.1372 -7.9089 0.4985 39 1 0.2871 -7.7110 0.2713 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011458895.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:38 Heat of formation + Delta-G solvation = -106.862150 kcal Electronic energy + Delta-G solvation = -26646.700654 eV Core-core repulsion = 22519.828803 eV Total energy + Delta-G solvation = -4126.871851 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.67452 -40.61596 -38.94832 -38.84547 -36.75706 -35.77428 -34.57481 -34.34455 -32.48296 -30.54543 -29.81039 -29.44300 -27.05364 -25.59564 -23.77582 -23.15782 -22.66508 -21.54706 -20.07786 -19.10799 -18.71041 -18.05006 -17.86415 -17.28717 -16.89067 -16.65227 -15.84992 -15.62284 -15.42054 -15.15831 -14.91463 -14.75829 -14.57452 -14.54591 -14.03822 -13.48763 -13.38320 -13.17528 -13.16867 -12.74453 -12.05650 -11.89201 -11.86244 -11.40050 -11.32992 -11.17314 -11.07100 -10.98494 -10.93320 -10.88115 -10.64109 -10.39440 -9.51720 -9.30980 -8.95379 -8.83922 -8.40603 -8.07908 -6.24934 -4.32565 -0.25527 0.81281 1.14626 1.96180 2.16842 2.46757 2.71529 3.04979 3.20760 3.26086 3.27104 3.58609 3.66986 3.88357 4.05298 4.24199 4.31088 4.50612 4.62842 4.88407 4.96170 4.98667 5.09012 5.12145 5.19258 5.21624 5.30665 5.44686 5.63598 5.77698 5.94722 6.07478 6.23984 6.36543 6.43877 6.68232 7.13336 7.19134 7.30479 7.38426 7.44903 7.54222 7.85912 8.40229 8.62544 8.86131 9.34004 10.85060 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.021816 B = 0.002377 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.175372 B =11778.937023 C =13033.824731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.252 3.748 10 N -0.704 5.704 11 C 0.501 3.499 12 O -0.535 6.535 13 C 0.041 3.959 14 O -0.316 6.316 15 C 0.508 3.492 16 O -0.487 6.487 17 C -0.021 4.021 18 C -0.125 4.125 19 C 0.538 3.462 20 O -0.524 6.524 21 N -0.625 5.625 22 H 0.418 0.582 23 C 0.178 3.822 24 C -0.169 4.169 25 C -0.061 4.061 26 C -0.141 4.141 27 C -0.052 4.052 28 C -0.119 4.119 29 H 0.268 0.732 30 H 0.030 0.970 31 H 0.030 0.970 32 H 0.394 0.606 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.172 0.828 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.822 -21.659 0.763 21.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.132 3.868 10 N -0.354 5.354 11 C 0.284 3.716 12 O -0.413 6.413 13 C -0.036 4.036 14 O -0.232 6.232 15 C 0.351 3.649 16 O -0.374 6.374 17 C -0.024 4.024 18 C -0.146 4.146 19 C 0.331 3.669 20 O -0.403 6.403 21 N -0.265 5.265 22 H 0.257 0.743 23 C 0.078 3.922 24 C -0.189 4.189 25 C -0.080 4.080 26 C -0.159 4.159 27 C -0.069 4.069 28 C -0.122 4.122 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.227 0.773 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.189 0.811 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.155 0.845 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -0.979 -22.064 0.691 22.097 hybrid contribution 0.809 0.786 -0.012 1.128 sum -0.170 -21.278 0.679 21.290 Atomic orbital electron populations 1.69955 1.06115 1.27586 1.48499 1.24943 0.94938 0.99490 0.94540 0.86451 0.79415 0.82164 0.78758 1.20017 1.21030 1.20012 1.21164 0.93306 0.90299 1.53777 0.91813 1.19186 0.88105 0.81448 0.98072 1.46370 1.11639 1.05312 1.72064 1.19800 0.89038 0.83962 0.78838 1.90693 1.16186 1.84504 1.49902 1.23064 0.94739 0.80691 1.05146 1.86614 1.39013 1.14142 1.83391 1.21068 0.85522 0.84802 0.73497 1.90870 1.14338 1.87737 1.44500 1.20409 0.92611 0.90537 0.98873 1.23672 1.02103 0.89302 0.99527 1.18059 0.81165 0.90100 0.77616 1.90971 1.64320 1.35396 1.49568 1.43309 1.07486 1.09389 1.66269 0.74329 1.17793 0.91344 0.85221 0.97870 1.20703 0.90434 1.00046 1.07752 1.21247 1.00257 0.91792 0.94674 1.21047 0.95056 0.98053 1.01786 1.21956 0.94071 0.98909 0.91982 1.18379 0.91082 0.92533 1.10175 0.92277 0.95173 0.95182 0.77335 0.88002 0.88014 0.81057 0.84823 0.84909 0.84530 0.80998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.03 13.29 55.43 0.74 -24.30 16 2 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 20.11 29.54 -169.99 -5.02 15.09 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 7 C -0.55 -14.08 9.28 -34.44 -0.32 -14.40 16 8 H 0.06 1.52 7.60 -52.49 -0.40 1.13 16 9 C 0.25 6.22 5.43 -5.19 -0.03 6.19 16 10 N -0.70 -13.36 5.55 -61.47 -0.34 -13.71 16 11 C 0.50 8.91 7.91 -10.99 -0.09 8.82 16 12 O -0.54 -11.45 16.17 -14.11 -0.23 -11.68 16 13 C 0.04 0.53 5.95 36.01 0.21 0.75 16 14 O -0.32 -4.29 6.10 -47.09 -0.29 -4.57 16 15 C 0.51 6.43 7.88 34.84 0.27 6.71 16 16 O -0.49 -6.76 16.18 -19.18 -0.31 -7.07 16 17 C -0.02 -0.23 6.04 -102.79 -0.62 -0.85 16 18 C -0.12 -1.32 9.75 -37.01 -0.36 -1.68 16 19 C 0.54 5.87 7.85 -13.24 -0.10 5.76 16 20 O -0.52 -7.20 17.91 5.08 0.09 -7.10 16 21 N -0.63 -5.25 5.28 -11.22 -0.06 -5.31 16 22 H 0.42 2.44 8.74 -40.82 -0.36 2.08 16 23 C 0.18 1.60 6.64 -83.88 -0.56 1.05 16 24 C -0.17 -1.19 9.89 -39.37 -0.39 -1.58 16 25 C -0.06 -0.46 10.02 -39.53 -0.40 -0.85 16 26 C -0.14 -1.39 9.97 -39.95 -0.40 -1.79 16 27 C -0.05 -0.60 9.29 -39.59 -0.37 -0.97 16 28 C -0.12 -1.30 5.89 -104.82 -0.62 -1.91 16 29 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.39 6.25 8.32 -40.82 -0.34 5.91 16 33 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.17 1.69 7.67 -52.49 -0.40 1.29 16 36 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 37 H 0.13 0.66 8.06 -52.48 -0.42 0.23 16 38 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.17 2.37 4.36 -52.57 -0.23 2.14 16 LS Contribution 350.30 15.07 5.28 5.28 Total: -1.00 -32.97 350.30 -7.82 -40.79 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -3.82 Total: 5.71 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -3.85 Total: 6.86 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.34 Total: -43.31 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.73 Total: -30.43 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.97 -7.82 -40.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011458895.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.073 kcal (2) G-P(sol) polarization free energy of solvation -32.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds