Wall clock time and date at job start Tue Mar 31 2020 05:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47556 * 2 1 4 4 C 1.33953 * 118.60650 * 264.98449 * 3 2 1 5 5 C 1.37986 * 122.17640 * 179.97438 * 4 3 2 6 6 C 1.47033 * 120.55147 * 180.02562 * 5 4 3 7 7 O 1.21670 * 120.00281 * 179.97438 * 6 5 4 8 8 N 1.34773 * 119.99675 * 359.97438 * 6 5 4 9 9 C 1.36957 * 119.99901 * 180.02562 * 8 6 5 10 10 H 1.07995 * 120.00117 * 359.97438 * 9 8 6 11 11 C 1.38986 * 119.99980 * 180.02562 * 9 8 6 12 12 N 1.31414 * 119.99855 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00030 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47174 * 89.99659 * 13 11 9 15 15 H 1.48497 * 109.46999 * 209.99582 * 13 11 9 16 16 H 1.48502 * 109.47132 * 329.99431 * 13 11 9 17 17 C 1.47205 * 118.90640 * 0.02562 * 5 4 3 18 18 O 1.21890 * 121.38965 * 180.02562 * 17 5 4 19 19 C 1.47273 * 117.22005 * 0.05351 * 17 5 4 20 20 C 1.39692 * 121.05694 * 179.87418 * 19 17 5 21 21 C 1.37837 * 119.71068 * 180.02562 * 20 19 17 22 22 C 1.39997 * 120.14533 * 359.94395 * 21 20 19 23 23 C 1.38266 * 120.40138 * 0.06667 * 22 21 20 24 24 C 1.37937 * 118.60201 * 84.99759 * 3 2 1 25 25 O 1.36440 * 108.46471 * 180.02562 * 22 21 20 26 26 C 1.43951 * 105.56753 * 342.60479 * 25 22 21 27 27 O 1.36569 * 131.31248 * 179.97438 * 21 20 19 28 28 H 1.09003 * 109.46914 * 299.99833 * 1 2 3 29 29 H 1.08999 * 109.46756 * 59.99504 * 1 2 3 30 30 H 1.08997 * 109.47557 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46914 * 240.00167 * 2 1 3 32 32 H 1.09004 * 109.47176 * 120.00638 * 2 1 3 33 33 H 1.08001 * 118.90994 * 359.97438 * 4 3 2 34 34 H 0.97008 * 120.00072 * 0.02562 * 8 6 5 35 35 H 0.97000 * 119.99871 * 180.02562 * 12 11 9 36 36 H 1.07998 * 120.14252 * 0.02562 * 20 19 17 37 37 H 1.07999 * 119.93436 * 180.26623 * 23 22 21 38 38 H 1.08995 * 110.55820 * 268.77445 * 26 25 22 39 39 H 1.08996 * 110.67557 * 146.00538 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.3292 1.9515 -1.1715 5 6 2.7950 3.2476 -1.2571 6 6 3.1249 3.8385 -2.5625 7 8 3.5344 4.9824 -2.6264 8 7 2.9736 3.1130 -3.6881 9 6 3.2814 3.6632 -4.9040 10 1 3.6449 4.6785 -4.9607 11 6 3.1250 2.9151 -6.0649 12 7 2.6822 1.6798 -5.9958 13 14 3.5454 3.6653 -7.7231 14 1 4.9715 3.3987 -8.0397 15 1 2.6844 3.0621 -8.7719 16 1 3.3145 5.1315 -7.6760 17 6 2.9561 4.0290 -0.0201 18 8 3.3635 5.1776 -0.0432 19 6 2.6053 3.3649 1.2467 20 6 2.7300 4.0309 2.4683 21 6 2.3942 3.3825 3.6373 22 6 1.9290 2.0626 3.6006 23 6 1.8036 1.3982 2.3945 24 6 2.1391 2.0389 1.2064 25 8 1.6700 1.6600 4.8782 26 6 2.3656 2.5927 5.7257 27 8 2.4231 3.7967 4.9384 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.2113 1.3780 -2.0790 34 1 2.6468 2.2010 -3.6372 35 1 2.5733 1.1576 -6.8060 36 1 3.0881 5.0494 2.4965 37 1 1.4399 0.3815 2.3745 38 1 3.3700 2.2324 5.9480 39 1 1.8092 2.7644 6.6471 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013693229.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:44 Heat of formation + Delta-G solvation = -73.288909 kcal Electronic energy + Delta-G solvation = -27738.148351 eV Core-core repulsion = 23612.732345 eV Total energy + Delta-G solvation = -4125.416006 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.44932 -40.87896 -38.32491 -37.61594 -36.54597 -36.33418 -33.89208 -33.33359 -31.35314 -30.89903 -30.05706 -29.19766 -26.34418 -25.30692 -24.02732 -23.90032 -23.69069 -21.34309 -20.74752 -19.13527 -18.40246 -18.16527 -17.72322 -17.19470 -16.39526 -16.23324 -15.94225 -15.48490 -15.08791 -14.95767 -14.64908 -14.50171 -14.20918 -13.85198 -13.78378 -13.67605 -13.52367 -13.22846 -13.15054 -12.93816 -12.66749 -12.53575 -12.25044 -11.84255 -11.57616 -11.56150 -11.31240 -11.12053 -10.66889 -10.40113 -10.25945 -9.55646 -9.29459 -9.22488 -8.51620 -8.28579 -7.99791 -7.41950 -6.49967 -3.81673 0.57181 0.72142 1.69794 2.22262 2.59855 2.88092 3.15433 3.19712 3.25461 3.32554 3.75792 4.10619 4.14484 4.32132 4.33709 4.38180 4.46933 4.48443 4.61471 4.72316 4.75765 4.85279 4.96161 5.08965 5.18959 5.31543 5.35292 5.42907 5.49009 5.52134 5.71572 5.76632 5.83106 5.87085 6.01450 6.14649 6.60637 6.68171 6.86873 7.04083 7.50252 8.03679 8.28980 8.59313 9.15510 9.49494 10.08885 10.68136 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.021485 B = 0.003148 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.912483 B = 8893.298528 C =10085.069167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.085 3.915 3 N -0.485 5.485 4 C 0.162 3.838 5 C -0.271 4.271 6 C 0.498 3.502 7 O -0.569 6.569 8 N -0.560 5.560 9 C -0.284 4.284 10 H 0.107 0.893 11 C 0.019 3.981 12 N -0.900 5.900 13 Si 0.932 3.068 14 H -0.277 1.277 15 H -0.283 1.283 16 H -0.268 1.268 17 C 0.432 3.568 18 O -0.446 6.446 19 C -0.182 4.182 20 C -0.009 4.009 21 C -0.016 4.016 22 C 0.095 3.905 23 C -0.165 4.165 24 C 0.213 3.787 25 O -0.306 6.306 26 C 0.213 3.787 27 O -0.305 6.305 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.168 0.832 34 H 0.387 0.613 35 H 0.273 0.727 36 H 0.152 0.848 37 H 0.147 0.853 38 H 0.085 0.915 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.784 -10.369 19.813 22.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.037 4.037 3 N -0.175 5.175 4 C 0.033 3.967 5 C -0.283 4.283 6 C 0.285 3.715 7 O -0.452 6.452 8 N -0.197 5.197 9 C -0.414 4.414 10 H 0.125 0.875 11 C -0.182 4.182 12 N -0.542 5.542 13 Si 0.759 3.241 14 H -0.203 1.203 15 H -0.209 1.209 16 H -0.192 1.192 17 C 0.313 3.687 18 O -0.322 6.322 19 C -0.186 4.186 20 C -0.028 4.028 21 C -0.061 4.061 22 C 0.049 3.951 23 C -0.187 4.187 24 C 0.110 3.890 25 O -0.222 6.222 26 C 0.101 3.899 27 O -0.222 6.222 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.185 0.815 34 H 0.221 0.779 35 H 0.082 0.918 36 H 0.170 0.830 37 H 0.164 0.836 38 H 0.102 0.898 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.483 -9.209 19.740 22.239 hybrid contribution -0.104 -0.599 -0.533 0.808 sum -4.587 -9.808 19.207 22.049 Atomic orbital electron populations 1.22255 0.94175 1.03340 1.03744 1.22187 0.96001 0.80172 1.05302 1.42712 1.57649 1.13860 1.03251 1.22036 0.92339 0.94239 0.88083 1.22373 1.14353 0.94307 0.97229 1.16983 0.85274 0.86935 0.82303 1.90705 1.50622 1.17819 1.86027 1.41844 1.57956 1.14626 1.05270 1.19818 1.39392 1.00045 0.82132 0.87519 1.25280 0.97342 0.95565 1.00040 1.69583 1.45804 1.08615 1.30170 0.85805 0.78315 0.79398 0.80566 1.20324 1.20899 1.19247 1.19257 0.76611 0.87109 0.85733 1.90736 1.36565 1.16989 1.87909 1.20052 1.09237 0.93518 0.95832 1.19859 0.95403 1.00780 0.86744 1.19478 1.07603 0.93127 0.85862 1.19520 0.97357 0.92315 0.85912 1.19319 1.11098 1.01242 0.87023 1.17256 0.95935 0.90886 0.84900 1.87330 1.69107 1.52237 1.13516 1.25625 0.97874 0.74309 0.92085 1.87403 1.91230 1.29870 1.13652 0.91741 0.91152 0.90435 0.87941 0.88888 0.81504 0.77917 0.91756 0.83033 0.83587 0.89758 0.85060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.23 10.06 37.16 0.37 -0.85 16 2 C 0.08 0.63 5.63 -4.04 -0.02 0.61 16 3 N -0.48 -5.73 2.63 -114.11 -0.30 -6.03 16 4 C 0.16 2.43 9.73 -16.72 -0.16 2.27 16 5 C -0.27 -5.54 6.04 -102.78 -0.62 -6.16 16 6 C 0.50 12.76 7.71 -12.70 -0.10 12.66 16 7 O -0.57 -17.22 15.12 -14.94 -0.23 -17.45 16 8 N -0.56 -14.18 5.23 -12.06 -0.06 -14.24 16 9 C -0.28 -7.88 9.68 -14.99 -0.15 -8.03 16 10 H 0.11 3.14 7.15 -52.49 -0.38 2.76 16 11 C 0.02 0.51 5.50 -17.45 -0.10 0.41 16 12 N -0.90 -23.34 13.05 55.50 0.72 -22.62 16 13 Si 0.93 20.73 29.55 -169.99 -5.02 15.71 16 14 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 15 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 16 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 17 C 0.43 8.90 7.14 -32.27 -0.23 8.67 16 18 O -0.45 -10.89 15.83 -15.14 -0.24 -11.13 16 19 C -0.18 -2.90 5.89 -104.79 -0.62 -3.52 16 20 C -0.01 -0.13 9.66 -39.19 -0.38 -0.50 16 21 C -0.02 -0.21 7.13 -39.07 -0.28 -0.48 16 22 C 0.09 1.10 7.14 -38.91 -0.28 0.82 16 23 C -0.17 -1.76 8.68 -39.26 -0.34 -2.10 16 24 C 0.21 2.76 6.49 -83.91 -0.54 2.21 16 25 O -0.31 -3.11 11.39 -45.48 -0.52 -3.62 16 26 C 0.21 1.63 8.88 101.05 0.90 2.53 16 27 O -0.31 -3.53 11.41 -45.91 -0.52 -4.06 16 28 H 0.06 0.48 7.54 -51.93 -0.39 0.09 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.10 0.63 7.83 -51.93 -0.41 0.23 16 32 H 0.09 0.51 6.34 -51.93 -0.33 0.18 16 33 H 0.17 2.24 6.12 -52.49 -0.32 1.92 16 34 H 0.39 8.83 5.90 -40.82 -0.24 8.59 16 35 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 36 H 0.15 2.21 7.77 -52.49 -0.41 1.80 16 37 H 0.15 1.13 5.91 -52.49 -0.31 0.82 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 336.34 15.07 5.07 5.07 Total: -1.00 -36.59 336.34 -7.25 -43.84 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -3.61 Total: 6.00 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: -2.54 Total: 8.54 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.36 Total: -42.89 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -1.51 Total: -36.26 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.59 -7.25 -43.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013693229.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.451 kcal (2) G-P(sol) polarization free energy of solvation -36.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds