Wall clock time and date at job start Tue Mar 31 2020 04:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86802 * 119.99942 * 2 1 4 4 H 1.48500 * 109.47203 * 240.00137 * 3 2 1 5 5 H 1.48503 * 109.46778 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47510 * 119.99718 * 3 2 1 7 7 C 1.39907 * 120.00549 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00415 * 175.56017 * 7 2 1 9 9 C 1.41158 * 119.99771 * 355.56130 * 7 2 1 10 10 C 1.40871 * 120.16110 * 214.78032 * 9 7 2 11 11 C 1.36368 * 119.82761 * 180.02562 * 10 9 7 12 12 C 1.39485 * 120.16797 * 0.02562 * 11 10 9 13 13 N 1.39235 * 119.83214 * 179.97438 * 12 11 10 14 14 C 1.34773 * 120.00536 * 35.28967 * 13 12 11 15 15 O 1.21284 * 119.99527 * 355.70728 * 14 13 12 16 16 C 1.50702 * 120.00619 * 175.70614 * 14 13 12 17 17 N 1.46497 * 109.47071 * 179.97438 * 16 14 13 18 18 C 1.39751 * 119.99824 * 180.02562 * 17 16 14 19 19 C 1.38883 * 120.07824 * 359.97438 * 18 17 16 20 20 C 1.38112 * 119.93939 * 180.02562 * 19 18 17 21 21 C 1.38289 * 120.09554 * 0.02562 * 20 19 18 22 22 C 1.38267 * 120.15645 * 0.02562 * 21 20 19 23 23 C 1.38210 * 120.06328 * 359.97438 * 22 21 20 24 24 Cl 1.73600 * 120.05215 * 180.02562 * 23 22 21 25 25 C 1.39480 * 120.33223 * 0.25515 * 12 11 10 26 26 C 1.36369 * 120.17041 * 359.48123 * 25 12 11 27 27 H 0.96994 * 120.00469 * 0.02562 * 1 2 3 28 28 H 1.08005 * 120.08756 * 0.02562 * 10 9 7 29 29 H 1.07993 * 119.91904 * 179.97438 * 11 10 9 30 30 H 0.97003 * 120.00086 * 215.28724 * 13 12 11 31 31 H 1.09003 * 109.46777 * 59.99876 * 16 14 13 32 32 H 1.09001 * 109.47051 * 300.00347 * 16 14 13 33 33 H 0.96993 * 120.00394 * 0.02562 * 17 16 14 34 34 H 1.08006 * 120.03234 * 0.27582 * 19 18 17 35 35 H 1.08005 * 119.95572 * 179.97438 * 20 19 18 36 36 H 1.08006 * 119.92532 * 180.02562 * 21 20 19 37 37 H 1.07998 * 119.97256 * 180.02562 * 22 21 20 38 38 H 1.08001 * 119.91276 * 179.74381 * 25 12 11 39 39 H 1.07999 * 120.09196 * 180.25544 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0964 1.6965 -1.2125 5 1 1.2776 2.7464 -0.0006 6 1 3.0964 1.6966 1.2125 7 6 2.0084 -1.2116 0.0005 8 1 3.0859 -1.2130 -0.0719 9 6 1.3058 -2.4322 0.0957 10 6 1.8652 -3.5179 0.7976 11 6 1.1808 -4.6942 0.8848 12 6 -0.0698 -4.8240 0.2808 13 7 -0.7622 -6.0284 0.3738 14 6 -0.6805 -6.7678 1.4976 15 8 0.0567 -6.4240 2.3973 16 6 -1.5050 -8.0216 1.6365 17 7 -1.2386 -8.6396 2.9377 18 6 -1.8913 -9.8221 3.2963 19 6 -2.7931 -10.4125 2.4206 20 6 -3.4370 -11.5809 2.7782 21 6 -3.1852 -12.1633 4.0069 22 6 -2.2889 -11.5783 4.8823 23 6 -1.6410 -10.4091 4.5311 24 17 -0.5152 -9.6752 5.6301 25 6 -0.6275 -3.7553 -0.4208 26 6 0.0426 -2.5711 -0.5121 27 1 -0.4850 0.8400 -0.0004 28 1 2.8336 -3.4190 1.2655 29 1 1.6084 -5.5276 1.4222 30 1 -1.3036 -6.3353 -0.3703 31 1 -1.2410 -8.7198 0.8421 32 1 -2.5632 -7.7706 1.5628 33 1 -0.6093 -8.2280 3.5504 34 1 -2.9878 -9.9606 1.4592 35 1 -4.1387 -12.0400 2.0975 36 1 -3.6899 -13.0772 4.2836 37 1 -2.0943 -12.0359 5.8410 38 1 -1.5944 -3.8646 -0.8894 39 1 -0.3923 -1.7431 -1.0522 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015287908.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:33 Heat of formation + Delta-G solvation = 8.595463 kcal Electronic energy + Delta-G solvation = -23714.210694 eV Core-core repulsion = 20033.054626 eV Total energy + Delta-G solvation = -3681.156069 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.16134 -39.42697 -37.44513 -36.49821 -35.51048 -34.52105 -33.02840 -30.94389 -30.38009 -29.64465 -28.91417 -26.89336 -24.75427 -22.98825 -22.12653 -21.50447 -20.79820 -19.80302 -18.23308 -17.38109 -17.19199 -16.50147 -16.05605 -15.76752 -15.64242 -15.19555 -14.44987 -14.21818 -14.15966 -14.01603 -13.93510 -13.31746 -13.18579 -12.74868 -12.67429 -12.19226 -12.13467 -11.76954 -11.64038 -11.50946 -11.42980 -11.18591 -11.07072 -10.95800 -10.78772 -10.44090 -10.13509 -9.57695 -9.54310 -9.24244 -9.02783 -8.97799 -7.66217 -7.61564 -6.94778 -6.67063 -4.40006 1.01387 1.28595 2.08405 2.41236 2.90508 2.97859 3.03522 3.06547 3.09082 3.26473 3.52070 3.68658 3.94241 4.54507 4.64098 4.73686 4.80444 5.03080 5.06813 5.13236 5.13652 5.30296 5.58120 5.59753 5.85354 6.03913 6.12105 6.27963 6.36498 6.47454 6.64507 6.80537 6.95480 7.00910 7.12453 7.23159 7.50282 7.57395 7.65900 7.76834 7.99690 8.14911 8.25036 8.51100 8.61023 8.87179 8.92889 10.23951 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.027163 B = 0.002110 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.550407 B =13267.749933 C =13927.645295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.069 3.931 3 Si 0.917 3.083 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.460 4.460 8 H 0.076 0.924 9 C 0.102 3.898 10 C -0.207 4.207 11 C -0.083 4.083 12 C -0.003 4.003 13 N -0.643 5.643 14 C 0.492 3.508 15 O -0.525 6.525 16 C 0.105 3.895 17 N -0.726 5.726 18 C 0.234 3.766 19 C -0.194 4.194 20 C -0.065 4.065 21 C -0.175 4.175 22 C -0.061 4.061 23 C -0.116 4.116 24 Cl -0.070 7.070 25 C -0.118 4.118 26 C -0.142 4.142 27 H 0.279 0.721 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.398 0.602 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.416 0.584 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.092 0.908 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.213 -19.560 2.800 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.146 4.146 3 Si 0.742 3.258 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.490 4.490 8 H 0.094 0.906 9 C 0.099 3.901 10 C -0.227 4.227 11 C -0.103 4.103 12 C -0.095 4.095 13 N -0.286 5.286 14 C 0.278 3.722 15 O -0.402 6.402 16 C -0.024 4.024 17 N -0.359 5.359 18 C 0.128 3.872 19 C -0.217 4.217 20 C -0.084 4.084 21 C -0.196 4.196 22 C -0.080 4.080 23 C -0.147 4.147 24 Cl -0.042 7.042 25 C -0.138 4.138 26 C -0.162 4.162 27 H 0.090 0.910 28 H 0.115 0.885 29 H 0.125 0.875 30 H 0.232 0.768 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.257 0.743 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.148 0.852 38 H 0.110 0.890 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.817 -18.955 3.361 20.777 hybrid contribution 0.283 0.896 0.038 0.940 sum -7.534 -18.059 3.399 19.861 Atomic orbital electron populations 1.69742 1.07303 1.28928 1.37771 1.25896 0.94969 1.01240 0.92500 0.86230 0.79800 0.80003 0.79815 1.19012 1.20396 1.19056 1.19486 0.94763 0.90215 1.44576 0.90569 1.17741 0.92267 0.91999 0.88088 1.20812 1.01297 0.94961 1.05593 1.20383 0.92733 0.97848 0.99328 1.17232 0.94332 0.85711 1.12187 1.42852 1.48648 1.21317 1.15822 1.20356 0.83767 0.85327 0.82798 1.90704 1.38996 1.70472 1.40018 1.21086 1.00149 0.93842 0.87279 1.44588 1.48245 1.24280 1.18772 1.17539 0.91687 0.86476 0.91522 1.20643 1.01420 0.99138 1.00485 1.20981 0.97271 0.94065 0.96053 1.20838 1.01762 1.01936 0.95019 1.20819 0.94708 0.92779 0.99733 1.20392 1.02537 0.99300 0.92514 1.98366 1.60673 1.82631 1.62494 1.20305 0.98340 0.93093 1.02042 1.21198 0.97316 0.95572 1.02145 0.91006 0.88540 0.87529 0.76837 0.89212 0.89078 0.74289 0.85213 0.85602 0.85649 0.85199 0.88993 0.84965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.83 10.60 55.55 0.59 -20.24 16 2 C 0.07 1.74 5.42 -17.34 -0.09 1.64 16 3 Si 0.92 18.84 29.56 -169.99 -5.03 13.81 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.46 -12.13 9.02 -37.85 -0.34 -12.47 16 8 H 0.08 1.93 7.85 -52.49 -0.41 1.51 16 9 C 0.10 2.69 5.55 -106.80 -0.59 2.10 16 10 C -0.21 -5.17 9.74 -39.26 -0.38 -5.55 16 11 C -0.08 -1.95 8.61 -39.79 -0.34 -2.29 16 12 C 0.00 -0.05 6.31 -83.57 -0.53 -0.58 16 13 N -0.64 -10.34 5.30 -9.74 -0.05 -10.39 16 14 C 0.49 7.86 7.73 -10.99 -0.08 7.77 16 15 O -0.53 -10.69 13.09 5.55 0.07 -10.62 16 16 C 0.10 1.16 5.40 -5.19 -0.03 1.13 16 17 N -0.73 -9.23 5.66 -59.77 -0.34 -9.56 16 18 C 0.23 2.69 6.65 -83.73 -0.56 2.13 16 19 C -0.19 -1.79 9.31 -39.39 -0.37 -2.16 16 20 C -0.06 -0.51 10.04 -39.61 -0.40 -0.91 16 21 C -0.18 -1.40 10.04 -39.55 -0.40 -1.80 16 22 C -0.06 -0.57 9.82 -39.58 -0.39 -0.96 16 23 C -0.12 -1.33 6.34 -39.31 -0.25 -1.58 16 24 Cl -0.07 -0.85 27.60 -51.86 -1.43 -2.28 16 25 C -0.12 -2.59 9.90 -39.79 -0.39 -2.99 16 26 C -0.14 -3.58 8.62 -39.26 -0.34 -3.92 16 27 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 28 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 29 H 0.11 2.47 6.22 -52.49 -0.33 2.14 16 30 H 0.40 4.70 8.82 -40.82 -0.36 4.34 16 31 H 0.09 0.77 7.95 -51.93 -0.41 0.35 16 32 H 0.09 0.82 7.95 -51.93 -0.41 0.41 16 33 H 0.42 6.14 6.11 -40.82 -0.25 5.89 16 34 H 0.13 0.95 6.74 -52.48 -0.35 0.60 16 35 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 36 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 37 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.13 3.44 6.13 -52.49 -0.32 3.12 16 LS Contribution 347.98 15.07 5.24 5.24 Total: -1.00 -30.23 347.98 -10.52 -40.75 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -4.10 Total: 13.73 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -5.48 Total: -20.43 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.20 Total: -40.20 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.07 Total: -10.62 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.43 Total: -2.28 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.23 -10.52 -40.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015287908.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.344 kcal (2) G-P(sol) polarization free energy of solvation -30.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds