Wall clock time and date at job start Tue Mar 31 2020 04:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86802 * 119.99914 * 2 1 4 4 H 1.48506 * 109.46908 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47027 * 300.00237 * 3 2 1 6 6 H 1.48498 * 109.47009 * 60.00340 * 3 2 1 7 7 C 1.39907 * 120.00430 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00475 * 175.55778 * 7 2 1 9 9 C 1.41158 * 119.99277 * 355.55663 * 7 2 1 10 10 C 1.40882 * 120.15902 * 214.78124 * 9 7 2 11 11 C 1.36374 * 119.82350 * 180.02562 * 10 9 7 12 12 C 1.39478 * 120.17167 * 0.02562 * 11 10 9 13 13 N 1.39237 * 119.83148 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99820 * 35.29576 * 13 12 11 15 15 O 1.21280 * 120.00265 * 355.70114 * 14 13 12 16 16 C 1.50701 * 119.99886 * 175.70480 * 14 13 12 17 17 N 1.46503 * 109.46946 * 179.97438 * 16 14 13 18 18 C 1.39673 * 119.99849 * 179.97438 * 17 16 14 19 19 C 1.38947 * 120.06680 * 0.02884 * 18 17 16 20 20 C 1.38093 * 119.94724 * 179.97438 * 19 18 17 21 21 C 1.38282 * 120.08830 * 359.97438 * 20 19 18 22 22 C 1.38384 * 120.13981 * 0.03833 * 21 20 19 23 23 Cl 1.73593 * 119.97674 * 179.97438 * 22 21 20 24 24 C 1.38242 * 120.04374 * 359.96266 * 22 21 20 25 25 C 1.39477 * 120.33303 * 0.25818 * 12 11 10 26 26 C 1.36381 * 120.17145 * 359.47679 * 25 12 11 27 27 H 0.96999 * 120.00338 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.08453 * 0.02562 * 10 9 7 29 29 H 1.07998 * 119.90814 * 179.97438 * 11 10 9 30 30 H 0.97003 * 120.00193 * 215.28935 * 13 12 11 31 31 H 1.09004 * 109.47211 * 60.00036 * 16 14 13 32 32 H 1.09000 * 109.46879 * 299.99686 * 16 14 13 33 33 H 0.96995 * 120.00094 * 0.02562 * 17 16 14 34 34 H 1.08001 * 120.02289 * 359.95132 * 19 18 17 35 35 H 1.08002 * 119.95327 * 179.97438 * 20 19 18 36 36 H 1.08003 * 119.92938 * 180.02562 * 21 20 19 37 37 H 1.08004 * 120.03917 * 180.29613 * 24 22 21 38 38 H 1.08001 * 119.91498 * 179.74821 * 25 12 11 39 39 H 1.07996 * 120.08921 * 180.25738 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.7027 1.3464 -0.0006 5 1 1.8838 2.3965 -1.2125 6 1 1.8839 2.3964 1.2125 7 6 2.0083 -1.2116 -0.0005 8 1 3.0858 -1.2130 -0.0730 9 6 1.3056 -2.4322 0.0936 10 6 1.8650 -3.5187 0.7947 11 6 1.1804 -4.6950 0.8809 12 6 -0.0701 -4.8242 0.2769 13 7 -0.7627 -6.0286 0.3689 14 6 -0.6809 -6.7687 1.4923 15 8 0.0563 -6.4258 2.3922 16 6 -1.5055 -8.0226 1.6302 17 7 -1.2392 -8.6416 2.9310 18 6 -1.8924 -9.8231 3.2890 19 6 -2.7946 -10.4129 2.4122 20 6 -3.4387 -11.5814 2.7684 21 6 -3.1864 -12.1654 3.9962 22 6 -2.2888 -11.5809 4.8724 23 17 -1.9758 -12.3174 6.4129 24 6 -1.6409 -10.4112 4.5215 25 6 -0.6278 -3.7549 -0.4239 26 6 0.0424 -2.5705 -0.5142 27 1 -0.4850 0.8400 0.0004 28 1 2.8334 -3.4202 1.2625 29 1 1.6082 -5.5288 1.4176 30 1 -1.3041 -6.3349 -0.3754 31 1 -1.2416 -8.7203 0.8353 32 1 -2.5637 -7.7714 1.5567 33 1 -0.6098 -8.2305 3.5439 34 1 -2.9923 -9.9576 1.4530 35 1 -4.1403 -12.0396 2.0871 36 1 -3.6913 -13.0794 4.2720 37 1 -0.9367 -9.9577 5.2034 38 1 -1.5947 -3.8637 -0.8924 39 1 -0.3925 -1.7421 -1.0536 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015289151.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:05 Heat of formation + Delta-G solvation = 7.972024 kcal Electronic energy + Delta-G solvation = -23431.710774 eV Core-core repulsion = 19750.527671 eV Total energy + Delta-G solvation = -3681.183103 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.17806 -39.44258 -37.49466 -36.78829 -35.32273 -34.53619 -33.05018 -31.16650 -30.23303 -29.66411 -28.94480 -26.93736 -24.75695 -23.07196 -22.14352 -21.50162 -20.81725 -19.82863 -18.20856 -17.40722 -17.23345 -16.42374 -16.07357 -15.75074 -15.64571 -15.21771 -14.69709 -14.32323 -14.12805 -13.93200 -13.84862 -13.38942 -13.29177 -12.86086 -12.70664 -12.21744 -12.01477 -11.84662 -11.76224 -11.57417 -11.45694 -11.23194 -11.13232 -11.04434 -10.80994 -10.33661 -10.13024 -9.60053 -9.55960 -9.27038 -9.02881 -9.00419 -7.72284 -7.63681 -6.96980 -6.69048 -4.41896 0.98963 1.26460 1.89404 2.38264 2.88129 2.97689 3.01157 3.06138 3.11343 3.24121 3.50901 3.66680 3.92978 4.58501 4.62216 4.77518 4.85134 4.94693 5.04022 5.11843 5.18283 5.25883 5.53986 5.57205 5.90364 6.07546 6.10084 6.19390 6.33656 6.36297 6.62047 6.78801 6.96976 7.00847 7.10458 7.21185 7.48950 7.55440 7.63683 7.74365 7.98196 8.12637 8.22970 8.48532 8.59210 8.85515 8.90895 10.22014 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.031049 B = 0.001817 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.588243 B =15406.760820 C =15921.657531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.459 4.459 8 H 0.077 0.923 9 C 0.101 3.899 10 C -0.206 4.206 11 C -0.083 4.083 12 C -0.003 4.003 13 N -0.643 5.643 14 C 0.492 3.508 15 O -0.527 6.527 16 C 0.106 3.894 17 N -0.728 5.728 18 C 0.237 3.763 19 C -0.199 4.199 20 C -0.058 4.058 21 C -0.177 4.177 22 C 0.017 3.983 23 Cl -0.076 7.076 24 C -0.190 4.190 25 C -0.118 4.118 26 C -0.142 4.142 27 H 0.278 0.722 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.398 0.602 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.414 0.586 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.092 0.908 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.032 -19.202 2.627 20.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.490 4.490 8 H 0.095 0.905 9 C 0.098 3.902 10 C -0.226 4.226 11 C -0.103 4.103 12 C -0.095 4.095 13 N -0.286 5.286 14 C 0.278 3.722 15 O -0.404 6.404 16 C -0.022 4.022 17 N -0.360 5.360 18 C 0.131 3.869 19 C -0.222 4.222 20 C -0.077 4.077 21 C -0.198 4.198 22 C -0.011 4.011 23 Cl -0.047 7.047 24 C -0.213 4.213 25 C -0.138 4.138 26 C -0.162 4.162 27 H 0.089 0.911 28 H 0.115 0.885 29 H 0.125 0.875 30 H 0.232 0.768 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.253 0.747 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.150 0.850 38 H 0.110 0.890 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.709 -18.745 3.226 20.523 hybrid contribution 0.204 0.788 0.085 0.819 sum -7.504 -17.956 3.311 19.741 Atomic orbital electron populations 1.69759 1.07317 1.28739 1.37900 1.25901 0.94966 1.01277 0.92494 0.86132 0.80607 0.80723 0.78447 1.18538 1.19943 1.19937 1.19559 0.94838 0.90188 1.44383 0.90463 1.17759 0.92271 0.92033 0.88091 1.20815 1.01285 0.94944 1.05593 1.20379 0.92728 0.97842 0.99363 1.17231 0.94348 0.85707 1.12230 1.42861 1.48597 1.21293 1.15868 1.20365 0.83731 0.85325 0.82765 1.90694 1.39109 1.70594 1.40025 1.21068 1.00077 0.93736 0.87357 1.44435 1.48366 1.24481 1.18670 1.17603 0.91026 0.85998 0.92267 1.20775 1.01605 0.99022 1.00799 1.20823 0.97452 0.94153 0.95255 1.20769 1.01762 1.02434 0.94808 1.20565 0.98395 0.94557 0.87542 1.98368 1.94970 1.82294 1.29054 1.20403 1.05936 0.97629 0.97346 1.20311 0.98351 0.93092 1.02031 1.21202 0.97304 0.95574 1.02114 0.91104 0.88525 0.87535 0.76818 0.89293 0.89168 0.74675 0.85484 0.85220 0.85468 0.85028 0.88983 0.84961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.66 10.60 55.55 0.59 -20.07 16 2 C 0.07 1.71 5.42 -17.34 -0.09 1.62 16 3 Si 0.92 18.68 29.56 -169.99 -5.03 13.65 16 4 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.46 -12.01 9.02 -37.85 -0.34 -12.35 16 8 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 9 C 0.10 2.65 5.55 -106.80 -0.59 2.05 16 10 C -0.21 -5.09 9.74 -39.25 -0.38 -5.48 16 11 C -0.08 -1.92 8.61 -39.79 -0.34 -2.26 16 12 C 0.00 -0.06 6.31 -83.57 -0.53 -0.59 16 13 N -0.64 -10.06 5.30 -9.74 -0.05 -10.11 16 14 C 0.49 7.52 7.73 -10.99 -0.08 7.43 16 15 O -0.53 -10.27 13.09 5.56 0.07 -10.20 16 16 C 0.11 1.09 5.39 -5.19 -0.03 1.06 16 17 N -0.73 -8.26 5.70 -59.81 -0.34 -8.60 16 18 C 0.24 2.50 6.65 -83.79 -0.56 1.95 16 19 C -0.20 -1.78 9.31 -39.37 -0.37 -2.14 16 20 C -0.06 -0.46 10.04 -39.62 -0.40 -0.86 16 21 C -0.18 -1.56 9.83 -39.51 -0.39 -1.95 16 22 C 0.02 0.17 6.32 -39.53 -0.25 -0.08 16 23 Cl -0.08 -0.73 28.95 -51.86 -1.50 -2.23 16 24 C -0.19 -2.02 9.68 -39.35 -0.38 -2.40 16 25 C -0.12 -2.56 9.90 -39.79 -0.39 -2.95 16 26 C -0.14 -3.54 8.62 -39.26 -0.34 -3.88 16 27 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 28 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 29 H 0.11 2.41 6.22 -52.49 -0.33 2.08 16 30 H 0.40 4.57 8.82 -40.82 -0.36 4.21 16 31 H 0.09 0.71 7.95 -51.93 -0.41 0.30 16 32 H 0.09 0.77 7.95 -51.93 -0.41 0.35 16 33 H 0.41 5.26 7.45 -40.82 -0.30 4.96 16 34 H 0.13 0.90 6.73 -52.49 -0.35 0.55 16 35 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.13 0.92 8.06 -52.48 -0.42 0.49 16 37 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16 38 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.13 3.41 6.13 -52.49 -0.32 3.09 16 LS Contribution 350.33 15.07 5.28 5.28 Total: -1.00 -29.56 350.33 -10.60 -40.15 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -4.15 Total: 12.96 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -5.47 Total: -20.84 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.20 Total: -38.78 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.07 Total: -10.20 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.50 Total: -2.23 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.56 -10.60 -40.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015289151.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.123 kcal (2) G-P(sol) polarization free energy of solvation -29.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds