Wall clock time and date at job start Tue Mar 31 2020 05:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47509 * 2 1 4 4 C 1.46496 * 120.00116 * 275.00119 * 3 2 1 5 5 C 1.52996 * 109.47172 * 275.00033 * 4 3 2 6 6 S 1.65597 * 120.00034 * 94.99922 * 3 2 1 7 7 O 1.42107 * 106.40306 * 336.46117 * 6 3 2 8 8 O 1.42102 * 106.40305 * 203.54155 * 6 3 2 9 9 C 1.76194 * 107.22077 * 90.00167 * 6 3 2 10 10 C 1.39761 * 126.05641 * 90.01935 * 9 6 3 11 11 C 1.38048 * 107.07849 * 179.75284 * 10 9 6 12 12 C 1.46425 * 126.25012 * 180.24855 * 11 10 9 13 13 O 1.21659 * 120.00271 * 359.97438 * 12 11 10 14 14 O 1.34893 * 120.00406 * 179.97438 * 12 11 10 15 15 C 1.34848 * 117.00594 * 179.97438 * 14 12 11 16 16 H 1.08007 * 119.99856 * 0.02562 * 15 14 12 17 17 C 1.38784 * 120.00412 * 180.02562 * 15 14 12 18 18 N 1.31438 * 119.99955 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 120.00108 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47073 * 59.99799 * 19 17 15 21 21 H 1.48499 * 109.46723 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46920 * 299.99771 * 19 17 15 23 23 N 1.37712 * 107.50238 * 0.23407 * 11 10 9 24 24 C 1.46503 * 125.68230 * 180.02562 * 23 11 10 25 25 C 1.35517 * 126.05653 * 270.17450 * 9 6 3 26 26 H 1.08997 * 109.46786 * 300.00465 * 1 2 3 27 27 H 1.09004 * 109.47012 * 59.99673 * 1 2 3 28 28 H 1.08995 * 109.47277 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47247 * 240.00130 * 2 1 3 30 30 H 1.09004 * 109.47012 * 120.00327 * 2 1 3 31 31 H 1.09000 * 109.47298 * 34.99946 * 4 3 2 32 32 H 1.09003 * 109.47265 * 154.99558 * 4 3 2 33 33 H 1.09001 * 109.47053 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.46953 * 299.99582 * 5 4 3 35 35 H 1.08995 * 109.47540 * 59.99964 * 5 4 3 36 36 H 1.08002 * 126.46346 * 0.02748 * 10 9 6 37 37 H 0.96998 * 120.00001 * 180.02562 * 18 17 15 38 38 H 1.08996 * 109.47351 * 89.99497 * 24 23 11 39 39 H 1.08998 * 109.47066 * 209.99724 * 24 23 11 40 40 H 1.09000 * 109.47097 * 329.99772 * 24 23 11 41 41 H 1.07999 * 125.55070 * 359.97438 * 25 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1584 2.1087 -1.2638 5 6 3.5152 1.7838 -1.8917 6 16 2.4123 2.1201 1.4287 7 8 1.6869 1.4415 2.4448 8 8 2.3059 3.5186 1.1998 9 6 4.1170 1.7940 1.7320 10 6 5.1927 2.5809 1.3112 11 6 6.3443 1.9691 1.7642 12 6 7.7144 2.4443 1.5617 13 8 7.9166 3.4712 0.9415 14 8 8.7524 1.7436 2.0627 15 6 9.9879 2.2359 1.8401 16 1 10.1115 3.1527 1.2827 17 6 11.1006 1.5646 2.3272 18 7 10.9502 0.4491 3.0060 19 14 12.8121 2.2471 2.0194 20 1 12.9199 3.6018 2.6181 21 1 13.8211 1.3509 2.6391 22 1 13.0558 2.3313 0.5570 23 7 5.9692 0.8303 2.4417 24 6 6.8795 -0.1187 3.0875 25 6 4.6176 0.7342 2.4122 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.3619 1.8098 -1.9453 32 1 2.0923 3.1803 -1.0755 33 1 3.6195 2.3255 -2.8319 34 1 4.3118 2.0828 -1.2104 35 1 3.5813 0.7123 -2.0801 36 1 5.1339 3.4974 0.7428 37 1 11.7279 -0.0199 3.3468 38 1 7.0474 0.1846 4.1209 39 1 6.4387 -1.1154 3.0684 40 1 7.8297 -0.1314 2.5537 41 1 4.0343 -0.0558 2.8617 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000018395769.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:46 Heat of formation + Delta-G solvation = -106.675525 kcal Electronic energy + Delta-G solvation = -26923.750853 eV Core-core repulsion = 22932.331046 eV Total energy + Delta-G solvation = -3991.419807 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.13322 -38.74637 -37.22974 -37.10999 -35.66681 -35.35357 -32.85506 -32.26770 -32.03693 -29.45456 -28.86983 -26.50927 -25.68296 -23.84201 -22.75365 -22.26029 -21.18336 -19.39357 -18.67742 -18.08540 -17.77102 -17.42625 -16.37730 -15.85164 -15.45286 -15.36473 -14.85414 -14.51457 -14.40936 -14.26320 -14.16615 -13.93536 -13.52129 -13.30767 -13.00415 -12.79595 -12.48598 -12.25604 -12.21366 -12.06211 -11.95996 -11.91833 -11.86060 -11.78513 -11.62953 -11.33846 -11.13527 -11.05047 -10.81448 -10.60754 -10.56829 -10.02276 -9.38132 -9.26415 -8.95409 -8.74982 -8.19325 -6.61675 -4.24756 0.58458 1.75727 2.17797 2.94154 3.08960 3.09638 3.12936 3.19847 3.78239 3.89772 3.95446 4.33151 4.49036 4.59595 4.89547 4.95329 4.99008 5.02038 5.10908 5.21846 5.24990 5.30166 5.36833 5.44307 5.57551 5.61290 5.75496 5.78901 5.81676 5.99100 6.02841 6.04675 6.11739 6.23573 6.55358 6.60499 6.76622 7.07024 7.20111 7.31791 7.76059 8.50008 8.89012 9.61268 10.56327 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.023577 B = 0.003153 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.289051 B = 8878.444382 C = 9210.030054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.122 3.878 3 N -0.999 5.999 4 C 0.113 3.887 5 C -0.179 4.179 6 S 2.721 3.279 7 O -0.966 6.966 8 O -0.961 6.961 9 C -0.757 4.757 10 C -0.046 4.046 11 C 0.001 3.999 12 C 0.462 3.538 13 O -0.537 6.537 14 O -0.212 6.212 15 C -0.378 4.378 16 H 0.098 0.902 17 C 0.044 3.956 18 N -0.865 5.865 19 Si 0.947 3.053 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.268 1.268 23 N -0.402 5.402 24 C 0.057 3.943 25 C 0.120 3.880 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.159 0.841 37 H 0.272 0.728 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.122 0.878 41 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.596 -5.628 -5.178 18.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.003 4.003 3 N -0.836 5.836 4 C -0.012 4.012 5 C -0.238 4.238 6 S 2.812 3.188 7 O -0.957 6.957 8 O -0.951 6.951 9 C -0.852 4.852 10 C -0.070 4.070 11 C -0.109 4.109 12 C 0.309 3.691 13 O -0.433 6.433 14 O -0.120 6.120 15 C -0.454 4.454 16 H 0.116 0.884 17 C -0.161 4.161 18 N -0.502 5.502 19 Si 0.771 3.229 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.193 1.193 23 N -0.073 5.073 24 C -0.083 4.083 25 C -0.024 4.024 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.176 0.824 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.141 0.859 41 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -16.596 -5.276 -4.559 18.002 hybrid contribution 1.643 -0.160 -0.196 1.662 sum -14.954 -5.436 -4.755 16.606 Atomic orbital electron populations 1.22223 0.95975 1.02326 1.02703 1.21181 0.94426 0.81534 1.03198 1.57649 1.79778 1.23746 1.22454 1.21345 0.97927 0.97211 0.84702 1.22278 0.97752 1.02188 1.01558 1.00940 0.72911 0.72979 0.72018 1.93537 1.70538 1.75798 1.55821 1.93541 1.86678 1.29808 1.85063 1.30776 1.23637 1.08446 1.22309 1.20688 0.87921 0.98799 0.99625 1.20124 0.92995 0.91377 1.06447 1.19455 0.84226 0.83966 0.81417 1.90722 1.85021 1.25169 1.42393 1.83905 1.14905 1.48413 1.64766 1.21262 0.78425 1.09630 1.36035 0.88393 1.25336 0.99568 0.95565 0.95588 1.69916 1.31638 1.15277 1.33343 0.85683 0.79296 0.78785 0.79137 1.19339 1.20294 1.19347 1.44597 1.06426 1.18681 1.37608 1.22555 0.95329 0.90447 0.99991 1.21650 0.82997 0.98653 0.99113 0.91784 0.92363 0.91560 0.90457 0.90125 0.90291 0.88872 0.91455 0.91616 0.92334 0.82385 0.91792 0.89776 0.89887 0.85923 0.80189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 10.24 37.16 0.38 -0.95 16 2 C 0.12 1.02 6.07 -4.04 -0.02 1.00 16 3 N -1.00 -10.59 2.78 -114.38 -0.32 -10.91 16 4 C 0.11 1.07 6.40 -4.05 -0.03 1.04 16 5 C -0.18 -1.77 10.24 37.16 0.38 -1.39 16 6 S 2.72 38.00 5.79 -107.50 -0.62 37.38 16 7 O -0.97 -14.59 16.82 -57.17 -0.96 -15.56 16 8 O -0.96 -16.04 16.42 -57.17 -0.94 -16.98 16 9 C -0.76 -11.73 6.17 -39.98 -0.25 -11.98 16 10 C -0.05 -0.85 9.65 -39.08 -0.38 -1.22 16 11 C 0.00 0.02 6.89 -82.00 -0.56 -0.54 16 12 C 0.46 11.62 7.85 34.03 0.27 11.88 16 13 O -0.54 -14.65 16.13 -19.39 -0.31 -14.97 16 14 O -0.21 -5.72 7.17 -22.07 -0.16 -5.88 16 15 C -0.38 -10.64 9.65 30.93 0.30 -10.34 16 16 H 0.10 2.81 6.86 -52.48 -0.36 2.45 16 17 C 0.04 1.16 5.50 -17.52 -0.10 1.06 16 18 N -0.86 -23.27 13.67 55.49 0.76 -22.51 16 19 Si 0.95 20.36 29.55 -169.99 -5.02 15.34 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 23 N -0.40 -6.89 3.16 -120.24 -0.38 -7.27 16 24 C 0.06 0.89 10.57 59.85 0.63 1.52 16 25 C 0.12 1.73 11.13 -16.89 -0.19 1.55 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.52 8.11 -51.93 -0.42 0.10 16 30 H 0.08 0.64 7.61 -51.93 -0.40 0.25 16 31 H 0.08 0.56 8.11 -51.93 -0.42 0.14 16 32 H 0.09 0.95 6.91 -51.93 -0.36 0.59 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.80 7.33 -51.93 -0.38 0.42 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.16 2.83 8.06 -52.49 -0.42 2.41 16 37 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.12 2.38 6.15 -51.93 -0.32 2.06 16 41 H 0.18 1.87 8.06 -52.49 -0.42 1.44 16 LS Contribution 365.66 15.07 5.51 5.51 Total: -1.00 -34.46 365.66 -7.61 -42.07 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.60 Total: 2.14 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 0.44 Total: -8.37 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.06 Total: -40.69 kcal Atomic # 8 Polarization: -51.00 SS G_CDS: -2.37 Total: -53.37 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 38.00 SS G_CDS: -0.62 Total: 37.38 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.46 -7.61 -42.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018395769.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.606 kcal (2) G-P(sol) polarization free energy of solvation -34.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds