Wall clock time and date at job start Tue Mar 31 2020 04:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.39943 * 125.90855 * 2 1 4 4 C 1.30723 * 109.18636 * 180.29811 * 3 2 1 5 5 C 1.40578 * 108.49096 * 359.73438 * 4 3 2 6 6 C 1.47609 * 126.41377 * 179.97438 * 5 4 3 7 7 O 1.21481 * 119.99718 * 180.02562 * 6 5 4 8 8 O 1.34716 * 120.00222 * 0.03088 * 6 5 4 9 9 C 1.35859 * 125.91060 * 179.83797 * 2 1 3 10 10 C 1.47408 * 126.51139 * 359.97438 * 9 2 1 11 11 O 1.21593 * 119.99657 * 99.60823 * 10 9 2 12 12 N 1.34775 * 120.00140 * 279.60737 * 10 9 2 13 13 C 1.38341 * 119.99766 * 174.84176 * 12 10 9 14 14 N 1.35763 * 126.09683 * 359.97438 * 13 12 10 15 15 H 0.97003 * 125.15679 * 359.97438 * 14 13 12 16 16 N 1.39755 * 109.68945 * 179.97438 * 14 13 12 17 17 C 1.32712 * 109.14848 * 359.97438 * 16 14 13 18 18 C 1.40990 * 126.49244 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00027 * 180.02562 * 18 17 16 20 20 C 1.40000 * 120.00056 * 359.75459 * 18 17 16 21 21 N 1.30812 * 119.99952 * 0.27023 * 20 18 17 22 22 Si 1.86802 * 120.00334 * 180.27106 * 20 18 17 23 23 H 1.48509 * 109.46880 * 59.99907 * 22 20 18 24 24 H 1.48496 * 109.47122 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47094 * 300.00034 * 22 20 18 26 26 C 1.38769 * 126.08942 * 180.27652 * 13 12 10 27 27 C 1.43206 * 126.83079 * 359.97438 * 26 13 12 28 28 N 6.43584 * 80.94522 * 132.38070 * 2 1 3 29 29 H 1.08997 * 109.46998 * 275.14586 * 1 2 3 30 30 H 1.09001 * 109.47118 * 35.14515 * 1 2 3 31 31 H 1.09003 * 109.46978 * 155.13941 * 1 2 3 32 32 H 1.08001 * 125.75785 * 179.76677 * 4 3 2 33 33 H 0.96704 * 116.99968 * 179.97438 * 8 6 5 34 34 H 0.96995 * 119.99694 * 354.84730 * 12 10 9 35 35 H 0.97000 * 120.00049 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2858 1.1335 0.0000 4 6 3.5377 0.7574 -0.0064 5 6 3.5811 -0.6478 -0.0047 6 6 4.7955 -1.4869 -0.0108 7 8 4.6971 -2.6977 -0.0090 8 8 6.0129 -0.9100 -0.0183 9 6 2.2619 -1.1004 0.0031 10 6 1.8167 -2.5056 0.0076 11 8 1.8003 -3.1414 -1.0287 12 7 1.4279 -3.0856 1.1604 13 6 0.9097 -4.3683 1.1488 14 7 0.7379 -5.1517 0.0534 15 1 0.9613 -4.8976 -0.8556 16 7 0.1903 -6.3799 0.4341 17 6 0.0130 -6.3886 1.7493 18 6 -0.5170 -7.4457 2.5170 19 1 -0.6157 -7.3392 3.5872 20 6 -0.9206 -8.6313 1.8914 21 7 -0.8010 -8.7603 0.5951 22 14 -1.6299 -10.0291 2.9075 23 1 -2.8515 -9.5602 3.6098 24 1 -1.9775 -11.1634 2.0144 25 1 -0.6251 -10.4745 3.9061 26 6 0.4675 -5.0812 2.2542 27 6 0.4594 -4.6366 3.6155 28 7 0.4521 -4.2840 4.6948 29 1 -0.3633 0.0922 1.0235 30 1 -0.3633 0.8403 -0.5916 31 1 -0.3633 -0.9325 -0.4321 32 1 4.3943 1.4151 -0.0116 33 1 6.7785 -1.5007 -0.0217 34 1 1.5113 -2.6037 1.9980 35 1 -1.0803 -9.5819 0.1616 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020616614.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:14 Heat of formation + Delta-G solvation = 58.704737 kcal Electronic energy + Delta-G solvation = -27032.785979 eV Core-core repulsion = 22841.846055 eV Total energy + Delta-G solvation = -4190.939925 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.091 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.12343 -40.48328 -39.86914 -38.58164 -36.20262 -35.42799 -35.04863 -34.00100 -33.48408 -31.39360 -30.17076 -28.53923 -27.86775 -25.97216 -24.88507 -23.38486 -21.75938 -21.47489 -20.87216 -19.84969 -18.75833 -18.37407 -17.97444 -17.01320 -16.39220 -16.31582 -15.81207 -15.55131 -15.44556 -15.21343 -14.91658 -14.88160 -14.26557 -14.01572 -13.65192 -13.44054 -13.22659 -13.12721 -12.90916 -12.15140 -12.11053 -11.81958 -11.73592 -11.71138 -11.28574 -11.22585 -10.85014 -10.74442 -10.70619 -10.55559 -10.19835 -10.12184 -9.41187 -9.38997 -8.82121 -7.97271 -7.23537 -6.61462 -4.60501 0.53014 1.29515 1.57390 1.79650 2.46689 2.71568 2.81325 2.89646 3.06928 3.13987 3.17340 3.61155 3.79078 3.85820 3.97290 4.00086 4.26561 4.45649 4.49774 4.62056 4.68603 4.87725 4.99440 5.30187 5.34800 5.41071 5.73708 5.79544 5.99275 6.12281 6.27827 6.44260 6.86709 6.90951 7.13293 7.31188 7.55683 7.72255 8.10468 8.45173 8.56897 8.63749 8.89726 9.53717 10.33805 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.018494 B = 0.003145 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.664190 B = 8900.662347 C = 9150.184840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.330 5.330 3 N -0.273 5.273 4 C 0.103 3.897 5 C -0.232 4.232 6 C 0.552 3.448 7 O -0.502 6.502 8 O -0.511 6.511 9 C 0.121 3.879 10 C 0.589 3.411 11 O -0.488 6.488 12 N -0.622 5.622 13 C 0.340 3.660 14 N -0.469 5.469 15 H 0.434 0.566 16 N -0.316 5.316 17 C 0.267 3.733 18 C -0.432 4.432 19 H 0.086 0.914 20 C 0.074 3.926 21 N -0.756 5.756 22 Si 0.914 3.086 23 H -0.265 1.265 24 H -0.278 1.278 25 H -0.265 1.265 26 C -0.269 4.269 27 C 0.319 3.681 28 N -0.499 5.499 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.207 0.793 33 H 0.418 0.582 34 H 0.423 0.577 35 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.378 17.497 -3.739 18.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.110 5.110 3 N -0.094 5.094 4 C -0.083 4.083 5 C -0.246 4.246 6 C 0.395 3.605 7 O -0.389 6.389 8 O -0.323 6.323 9 C -0.016 4.016 10 C 0.371 3.629 11 O -0.358 6.358 12 N -0.269 5.269 13 C 0.108 3.892 14 N -0.179 5.179 15 H 0.282 0.718 16 N -0.149 5.149 17 C 0.115 3.885 18 C -0.471 4.471 19 H 0.104 0.896 20 C -0.149 4.149 21 N -0.382 5.382 22 Si 0.739 3.261 23 H -0.190 1.190 24 H -0.203 1.203 25 H -0.189 1.189 26 C -0.291 4.291 27 C 0.009 3.991 28 N -0.180 5.180 29 H 0.113 0.887 30 H 0.124 0.876 31 H 0.115 0.885 32 H 0.224 0.776 33 H 0.277 0.723 34 H 0.261 0.739 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.855 17.767 -4.172 18.885 hybrid contribution 1.079 -0.908 0.655 1.555 sum 5.934 16.859 -3.517 18.216 Atomic orbital electron populations 1.22316 0.71818 1.05967 1.05323 1.48922 1.07620 1.02093 1.52404 1.77402 1.01788 1.06300 1.23917 1.24119 0.95406 0.93080 0.95674 1.19090 0.89282 0.93611 1.22629 1.19588 0.82703 0.85551 0.72665 1.91022 1.87255 1.14957 1.45693 1.84471 1.16266 1.45362 1.86239 1.20983 0.91159 0.88766 1.00693 1.17034 0.77491 0.84334 0.84004 1.90737 1.50781 1.62393 1.31918 1.42525 1.60112 1.13983 1.10276 1.17913 0.98113 0.82142 0.90984 1.47458 1.50928 1.12341 1.07143 0.71832 1.78915 1.30088 0.93483 1.12366 1.20073 0.90835 0.88365 0.89244 1.18610 1.37608 0.96278 0.94609 0.89581 1.25880 0.94411 0.99496 0.95070 1.69868 1.32839 1.26150 1.09340 0.86265 0.80088 0.79685 0.80107 1.18969 1.20345 1.18936 1.16528 1.29027 0.99524 0.84004 1.24632 0.90973 0.91764 0.91730 1.81083 1.15128 1.10689 1.11130 0.88742 0.87618 0.88454 0.77616 0.72332 0.73906 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 11.33 59.85 0.68 1.27 16 2 N -0.33 -3.37 4.03 -63.69 -0.26 -3.63 16 3 N -0.27 -2.77 12.50 30.76 0.38 -2.39 16 4 C 0.10 0.93 11.81 -17.14 -0.20 0.73 16 5 C -0.23 -2.70 6.16 -104.73 -0.64 -3.34 16 6 C 0.55 6.76 8.34 34.55 0.29 7.05 16 7 O -0.50 -8.22 16.59 -19.25 -0.32 -8.54 16 8 O -0.51 -4.12 13.27 -40.54 -0.54 -4.66 16 9 C 0.12 1.51 6.74 -81.89 -0.55 0.95 16 10 C 0.59 8.93 5.70 -12.53 -0.07 8.86 16 11 O -0.49 -8.76 14.61 5.28 0.08 -8.68 16 12 N -0.62 -9.66 5.37 -11.97 -0.06 -9.72 16 13 C 0.34 6.81 7.74 -152.84 -1.18 5.63 16 14 N -0.47 -10.38 6.92 31.53 0.22 -10.16 16 15 H 0.43 9.04 6.36 -182.86 -1.16 7.87 16 16 N -0.32 -8.25 10.90 33.37 0.36 -7.89 16 17 C 0.27 6.94 6.94 -82.75 -0.57 6.37 16 18 C -0.43 -11.34 9.27 -37.88 -0.35 -11.69 16 19 H 0.09 2.18 7.85 -52.49 -0.41 1.77 16 20 C 0.07 1.86 5.50 -17.33 -0.10 1.77 16 21 N -0.76 -19.82 11.96 55.55 0.66 -19.16 16 22 Si 0.91 18.74 29.56 -169.99 -5.02 13.72 16 23 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 24 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 25 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 26 C -0.27 -6.05 6.20 -104.08 -0.65 -6.70 16 27 C 0.32 6.89 15.43 -22.49 -0.35 6.54 16 28 N -0.50 -10.83 18.53 41.82 0.78 -10.06 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.10 0.70 7.68 -51.93 -0.40 0.30 16 32 H 0.21 1.11 8.06 -52.49 -0.42 0.68 16 33 H 0.42 1.68 9.11 45.56 0.42 2.10 16 34 H 0.42 5.59 8.52 -40.82 -0.35 5.24 16 35 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 LS Contribution 338.87 15.07 5.11 5.11 Total: -1.00 -34.60 338.87 -4.62 -39.22 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -2.31 Total: 9.40 kcal Atomic # 6 Polarization: 21.14 SS G_CDS: -3.70 Total: 17.44 kcal Atomic # 7 Polarization: -65.09 SS G_CDS: 2.08 Total: -63.00 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.78 Total: -21.88 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.02 Total: 13.72 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.60 -4.62 -39.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020616614.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.930 kcal (2) G-P(sol) polarization free energy of solvation -34.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds