Wall clock time and date at job start Tue Mar 31 2020 04:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00341 * 2 1 4 4 H 1.48507 * 109.46860 * 240.00073 * 3 2 1 5 5 H 1.48502 * 109.46940 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47419 * 119.99624 * 3 2 1 7 7 C 1.37874 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00125 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00251 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.47297 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99996 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99950 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00027 * 179.97438 * 11 10 9 14 14 O 1.45201 * 109.46960 * 180.02562 * 13 11 10 15 15 C 1.34805 * 116.99675 * 179.97438 * 14 13 11 16 16 O 1.21526 * 120.00288 * 0.02562 * 15 14 13 17 17 C 1.47314 * 120.00152 * 180.02562 * 15 14 13 18 18 C 1.35680 * 118.98122 * 180.02562 * 17 15 14 19 19 C 1.46274 * 119.40295 * 180.02562 * 18 17 15 20 20 C 1.39617 * 121.78466 * 180.02562 * 19 18 17 21 21 C 1.37791 * 119.54492 * 179.97438 * 20 19 18 22 22 C 1.38816 * 120.69619 * 359.97438 * 21 20 19 23 23 C 1.37905 * 120.73455 * 0.02562 * 22 21 20 24 24 C 1.39271 * 119.60173 * 359.97438 * 23 22 21 25 25 C 1.47006 * 121.76506 * 180.02562 * 24 23 22 26 26 O 1.21740 * 120.27952 * 359.97438 * 25 24 23 27 27 N 1.34736 * 119.44427 * 179.97438 * 25 24 23 28 28 H 0.97001 * 118.96206 * 179.97438 * 27 25 24 29 29 H 0.97002 * 119.99735 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46881 * 59.99972 * 9 7 2 31 31 H 1.09003 * 109.47472 * 300.00028 * 9 7 2 32 32 H 0.96994 * 119.99981 * 0.02562 * 10 9 7 33 33 H 1.09002 * 109.46502 * 60.00346 * 13 11 10 34 34 H 1.09003 * 109.47025 * 300.00662 * 13 11 10 35 35 H 1.08002 * 120.29572 * 0.04437 * 18 17 15 36 36 H 1.08003 * 120.22433 * 359.97438 * 20 19 18 37 37 H 1.07998 * 119.64953 * 179.97438 * 21 20 19 38 38 H 1.08001 * 119.63150 * 180.28191 * 22 21 20 39 39 H 1.08006 * 120.19758 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 7 2.2029 -3.6127 0.0015 11 6 1.7536 -4.8834 0.0029 12 8 0.5612 -5.1050 0.0039 13 6 2.7328 -6.0289 0.0021 14 8 2.0067 -7.2863 0.0033 15 6 2.7409 -8.4169 0.0022 16 8 3.9545 -8.3534 0.0008 17 6 2.0721 -9.7295 0.0028 18 6 2.8312 -10.8541 0.0022 19 6 2.1768 -12.1622 0.0022 20 6 2.9091 -13.3509 0.0022 21 6 2.2449 -14.5582 0.0027 22 6 0.8575 -14.6037 0.0039 23 6 0.1143 -13.4421 0.0039 24 6 0.7635 -12.2099 0.0034 25 6 0.0185 -10.9426 0.0040 26 8 -1.1989 -10.9463 0.0045 27 7 0.6943 -9.7770 0.0040 28 1 0.1957 -8.9450 0.0040 29 1 -0.4850 0.8401 -0.0004 30 1 0.6239 -2.5574 -0.8880 31 1 0.6246 -2.5563 0.8920 32 1 3.1565 -3.4355 0.0010 33 1 3.3608 -5.9706 0.8911 34 1 3.3582 -5.9716 -0.8889 35 1 3.9089 -10.7839 0.0021 36 1 3.9888 -13.3243 0.0017 37 1 2.8097 -15.4787 0.0023 38 1 0.3546 -15.5595 0.0089 39 1 -0.9648 -13.4876 0.0052 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021591778.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:45 Heat of formation + Delta-G solvation = -116.410302 kcal Electronic energy + Delta-G solvation = -25978.830855 eV Core-core repulsion = 21851.544965 eV Total energy + Delta-G solvation = -4127.285890 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.64843 -40.58473 -38.88546 -38.64977 -37.09578 -36.60700 -34.34045 -32.71236 -32.47634 -31.69829 -30.35044 -29.26798 -26.92220 -25.23920 -24.69283 -22.76309 -22.18774 -21.77292 -20.08064 -19.35715 -19.11577 -18.31516 -17.50975 -17.08929 -17.00178 -16.24140 -15.75795 -15.67299 -15.61912 -15.33597 -15.17311 -14.76135 -14.69291 -14.35104 -14.11010 -13.46139 -13.28463 -13.21160 -13.16282 -12.72045 -12.25239 -12.21074 -12.04760 -11.87077 -11.66927 -11.34430 -11.07103 -11.02059 -10.89840 -10.48109 -10.38942 -10.15869 -9.56479 -9.50768 -9.31016 -8.83098 -8.35884 -8.07206 -6.23425 -4.31497 -0.16074 0.37947 1.26380 1.91837 2.11548 2.46127 2.56344 3.05030 3.21486 3.26558 3.27872 3.49203 3.66348 3.90257 4.17472 4.22377 4.29230 4.37569 4.43233 4.69962 4.76172 4.90472 5.05432 5.11759 5.13026 5.17869 5.21294 5.27581 5.45012 5.79379 5.82915 5.89198 5.90982 6.18668 6.32980 6.50624 7.12146 7.17543 7.24897 7.39654 7.54739 7.57484 7.87032 8.40697 8.63721 8.87178 9.35013 10.86556 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.033580 B = 0.001915 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.627270 B =14620.502091 C =15433.681986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.704 5.704 11 C 0.499 3.501 12 O -0.533 6.533 13 C 0.051 3.949 14 O -0.327 6.327 15 C 0.506 3.494 16 O -0.483 6.483 17 C 0.115 3.885 18 C -0.103 4.103 19 C -0.014 4.014 20 C -0.109 4.109 21 C -0.088 4.088 22 C -0.125 4.125 23 C -0.052 4.052 24 C -0.134 4.134 25 C 0.551 3.449 26 O -0.517 6.517 27 N -0.622 5.622 28 H 0.430 0.570 29 H 0.268 0.732 30 H 0.030 0.970 31 H 0.030 0.970 32 H 0.394 0.606 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.167 0.833 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.894 -28.895 0.009 30.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.354 5.354 11 C 0.281 3.719 12 O -0.410 6.410 13 C -0.026 4.026 14 O -0.241 6.241 15 C 0.349 3.651 16 O -0.371 6.371 17 C 0.013 3.987 18 C -0.128 4.128 19 C -0.016 4.016 20 C -0.127 4.127 21 C -0.106 4.106 22 C -0.143 4.143 23 C -0.071 4.071 24 C -0.138 4.138 25 C 0.343 3.657 26 O -0.394 6.394 27 N -0.263 5.263 28 H 0.270 0.730 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.227 0.773 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.184 0.816 36 H 0.156 0.844 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.527 -28.945 0.010 29.908 hybrid contribution 0.935 1.554 0.000 1.813 sum 8.462 -27.392 0.010 28.669 Atomic orbital electron populations 1.69959 1.06128 1.27604 1.48389 1.24953 0.94944 0.99517 0.94543 0.86436 0.79390 0.82137 0.78722 1.20024 1.21018 1.20021 1.21157 0.93297 0.90270 1.53883 0.91782 1.19199 0.88121 0.81446 0.98111 1.46369 1.11614 1.05256 1.72173 1.19826 0.89060 0.83987 0.79013 1.90729 1.16222 1.84497 1.49596 1.23009 0.94481 0.79961 1.05152 1.86572 1.40144 1.14206 1.83205 1.20740 0.85838 0.84524 0.74037 1.90917 1.13723 1.87411 1.45020 1.18824 0.83385 0.91505 1.05016 1.21868 1.00716 0.88267 1.01939 1.18920 0.91823 0.93155 0.97685 1.21199 1.00322 0.90854 1.00354 1.21360 0.94574 0.98106 0.96576 1.21295 0.94060 0.98430 1.00553 1.21145 1.01045 0.90309 0.94574 1.19961 0.92870 0.93694 1.07258 1.18117 0.87193 0.83428 0.76937 1.90940 1.12335 1.86529 1.49562 1.43383 1.05060 1.11630 1.66197 0.73011 0.92255 0.95179 0.95178 0.77350 0.87910 0.87913 0.81584 0.84372 0.84958 0.84895 0.84101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.53 13.29 55.43 0.74 -24.79 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.39 29.54 -169.99 -5.02 15.37 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.55 -14.37 9.28 -34.44 -0.32 -14.69 16 8 H 0.06 1.55 7.60 -52.48 -0.40 1.15 16 9 C 0.25 6.40 5.43 -5.19 -0.03 6.38 16 10 N -0.70 -13.84 5.55 -61.47 -0.34 -14.18 16 11 C 0.50 9.36 7.91 -10.99 -0.09 9.27 16 12 O -0.53 -12.41 16.50 -14.11 -0.23 -12.64 16 13 C 0.05 0.69 5.96 36.01 0.21 0.90 16 14 O -0.33 -4.55 9.01 -47.46 -0.43 -4.97 16 15 C 0.51 6.05 7.91 34.42 0.27 6.33 16 16 O -0.48 -6.12 15.97 -19.28 -0.31 -6.42 16 17 C 0.12 1.21 6.75 -82.38 -0.56 0.66 16 18 C -0.10 -0.88 9.51 -37.27 -0.35 -1.23 16 19 C -0.01 -0.12 5.89 -104.95 -0.62 -0.74 16 20 C -0.11 -0.64 9.86 -39.23 -0.39 -1.02 16 21 C -0.09 -0.44 10.01 -39.53 -0.40 -0.83 16 22 C -0.13 -0.72 10.01 -39.49 -0.40 -1.12 16 23 C -0.05 -0.43 9.65 -39.32 -0.38 -0.81 16 24 C -0.13 -1.36 5.90 -104.75 -0.62 -1.97 16 25 C 0.55 6.91 7.92 -12.73 -0.10 6.81 16 26 O -0.52 -8.01 17.35 5.15 0.09 -7.92 16 27 N -0.62 -7.25 5.26 -9.95 -0.05 -7.30 16 28 H 0.43 5.23 8.08 -40.82 -0.33 4.90 16 29 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.39 6.39 8.32 -40.82 -0.34 6.05 16 33 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.17 1.10 7.49 -52.49 -0.39 0.71 16 36 H 0.14 0.47 8.06 -52.48 -0.42 0.05 16 37 H 0.13 0.31 8.06 -52.49 -0.42 -0.12 16 38 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 39 H 0.14 1.13 7.77 -52.48 -0.41 0.73 16 LS Contribution 355.54 15.07 5.36 5.36 Total: -1.00 -34.47 355.54 -8.01 -42.48 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -3.96 Total: 5.45 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: -3.85 Total: 9.57 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.34 Total: -46.27 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -0.88 Total: -31.96 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.47 -8.01 -42.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021591778.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.927 kcal (2) G-P(sol) polarization free energy of solvation -34.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds