Wall clock time and date at job start Tue Mar 31 2020 04:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00341 * 2 1 4 4 H 1.48507 * 109.46860 * 240.00073 * 3 2 1 5 5 H 1.48502 * 109.46940 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47419 * 119.99624 * 3 2 1 7 7 C 1.37874 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00125 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00251 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.47297 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99996 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99950 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00027 * 179.97438 * 11 10 9 14 14 O 1.45201 * 109.46960 * 180.02562 * 13 11 10 15 15 C 1.34805 * 116.99675 * 179.97438 * 14 13 11 16 16 O 1.21526 * 120.00288 * 0.02562 * 15 14 13 17 17 C 1.47314 * 120.00152 * 180.02562 * 15 14 13 18 18 C 1.35680 * 118.98122 * 180.02562 * 17 15 14 19 19 C 1.46274 * 119.40295 * 180.02562 * 18 17 15 20 20 C 1.39617 * 121.78466 * 180.02562 * 19 18 17 21 21 C 1.37791 * 119.54492 * 179.97438 * 20 19 18 22 22 C 1.38816 * 120.69619 * 359.97438 * 21 20 19 23 23 C 1.37905 * 120.73455 * 0.02562 * 22 21 20 24 24 C 1.39271 * 119.60173 * 359.97438 * 23 22 21 25 25 C 1.47006 * 121.76506 * 180.02562 * 24 23 22 26 26 O 1.21740 * 120.27952 * 359.97438 * 25 24 23 27 27 N 1.34736 * 119.44427 * 179.97438 * 25 24 23 28 28 H 0.97001 * 118.96206 * 179.97438 * 27 25 24 29 29 H 0.97002 * 119.99735 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46881 * 59.99972 * 9 7 2 31 31 H 1.09003 * 109.47472 * 300.00028 * 9 7 2 32 32 H 0.96994 * 119.99981 * 0.02562 * 10 9 7 33 33 H 1.09002 * 109.46502 * 60.00346 * 13 11 10 34 34 H 1.09003 * 109.47025 * 300.00662 * 13 11 10 35 35 H 1.08002 * 120.29572 * 0.04437 * 18 17 15 36 36 H 1.08003 * 120.22433 * 359.97438 * 20 19 18 37 37 H 1.07998 * 119.64953 * 179.97438 * 21 20 19 38 38 H 1.08001 * 119.63150 * 180.28191 * 22 21 20 39 39 H 1.08006 * 120.19758 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 7 2.2029 -3.6127 0.0015 11 6 1.7536 -4.8834 0.0029 12 8 0.5612 -5.1050 0.0039 13 6 2.7328 -6.0289 0.0021 14 8 2.0067 -7.2863 0.0033 15 6 2.7409 -8.4169 0.0022 16 8 3.9545 -8.3534 0.0008 17 6 2.0721 -9.7295 0.0028 18 6 2.8312 -10.8541 0.0022 19 6 2.1768 -12.1622 0.0022 20 6 2.9091 -13.3509 0.0022 21 6 2.2449 -14.5582 0.0027 22 6 0.8575 -14.6037 0.0039 23 6 0.1143 -13.4421 0.0039 24 6 0.7635 -12.2099 0.0034 25 6 0.0185 -10.9426 0.0040 26 8 -1.1989 -10.9463 0.0045 27 7 0.6943 -9.7770 0.0040 28 1 0.1957 -8.9450 0.0040 29 1 -0.4850 0.8401 -0.0004 30 1 0.6239 -2.5574 -0.8880 31 1 0.6246 -2.5563 0.8920 32 1 3.1565 -3.4355 0.0010 33 1 3.3608 -5.9706 0.8911 34 1 3.3582 -5.9716 -0.8889 35 1 3.9089 -10.7839 0.0021 36 1 3.9888 -13.3243 0.0017 37 1 2.8097 -15.4787 0.0023 38 1 0.3546 -15.5595 0.0089 39 1 -0.9648 -13.4876 0.0052 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021591778.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:44 Heat of formation + Delta-G solvation = -140.707338 kcal Electronic energy + Delta-G solvation = -25979.884454 eV Core-core repulsion = 21851.544965 eV Total energy + Delta-G solvation = -4128.339489 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.48437 -41.54982 -40.41567 -39.33796 -38.05799 -37.57504 -36.21258 -34.43801 -33.38301 -32.28224 -31.29324 -30.53432 -28.61165 -26.11755 -25.36539 -24.58608 -22.86627 -22.70126 -21.69685 -20.15150 -19.91774 -19.34954 -18.83425 -18.21299 -18.02663 -17.57937 -17.03056 -16.83575 -16.73651 -16.31729 -16.16430 -16.11437 -15.92070 -15.25125 -14.80276 -14.69047 -14.62557 -14.19918 -13.97559 -13.85277 -13.81105 -13.74505 -13.04944 -12.97074 -12.78264 -12.68920 -12.33918 -12.25186 -12.14688 -12.04690 -11.53764 -11.39875 -10.96096 -10.81740 -10.80898 -10.11917 -9.95522 -9.07696 -8.30423 -6.47413 -0.86372 -0.24503 0.61109 0.93086 1.26457 1.44003 1.47414 1.52501 1.55870 1.61848 1.84993 2.28418 2.46855 2.86359 3.04897 3.12412 3.31701 3.61863 3.66374 3.66866 3.89776 4.01081 4.03156 4.27446 4.27579 4.50203 4.62979 4.65072 4.89629 4.99034 5.07331 5.20012 5.25028 5.26707 5.38953 5.39703 5.42179 5.60507 5.68276 5.80744 5.83959 6.24893 6.61465 6.67296 6.75063 7.19244 7.34196 8.81373 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.033580 B = 0.001915 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.627270 B =14620.502091 C =15433.681986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.558 4.558 8 H 0.088 0.912 9 C 0.266 3.734 10 N -0.697 5.697 11 C 0.497 3.503 12 O -0.586 6.586 13 C 0.064 3.936 14 O -0.348 6.348 15 C 0.515 3.485 16 O -0.489 6.489 17 C 0.079 3.921 18 C -0.064 4.064 19 C -0.034 4.034 20 C -0.096 4.096 21 C -0.080 4.080 22 C -0.112 4.112 23 C -0.074 4.074 24 C -0.154 4.154 25 C 0.541 3.459 26 O -0.566 6.566 27 N -0.625 5.625 28 H 0.421 0.579 29 H 0.269 0.731 30 H -0.009 1.009 31 H -0.009 1.009 32 H 0.414 0.586 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.193 0.807 36 H 0.173 0.827 37 H 0.172 0.828 38 H 0.161 0.839 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.315 -31.224 0.008 33.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.596 4.596 8 H 0.106 0.894 9 C 0.144 3.856 10 N -0.348 5.348 11 C 0.283 3.717 12 O -0.466 6.466 13 C -0.013 4.013 14 O -0.264 6.264 15 C 0.359 3.641 16 O -0.377 6.377 17 C -0.022 4.022 18 C -0.088 4.088 19 C -0.036 4.036 20 C -0.114 4.114 21 C -0.098 4.098 22 C -0.130 4.130 23 C -0.093 4.093 24 C -0.158 4.158 25 C 0.336 3.664 26 O -0.448 6.448 27 N -0.265 5.265 28 H 0.259 0.741 29 H 0.078 0.922 30 H 0.009 0.991 31 H 0.009 0.991 32 H 0.251 0.749 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.210 0.790 36 H 0.190 0.810 37 H 0.189 0.811 38 H 0.179 0.821 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 12.054 -31.307 0.009 33.547 hybrid contribution -0.413 2.009 0.000 2.051 sum 11.642 -29.297 0.010 31.525 Atomic orbital electron populations 1.70131 1.08300 1.28686 1.49782 1.26071 0.95765 1.03955 0.93838 0.85191 0.77864 0.76532 0.79533 1.18605 1.21316 1.18598 1.21591 0.94493 0.90338 1.53130 0.89396 1.18623 0.88595 0.83867 0.94537 1.46014 1.11772 1.04640 1.72393 1.20734 0.89323 0.84816 0.76859 1.90710 1.19051 1.85319 1.51539 1.22887 0.92386 0.77882 1.08104 1.86562 1.41206 1.14835 1.83759 1.20778 0.85675 0.84141 0.73474 1.90902 1.13621 1.87392 1.45827 1.18822 0.82814 0.91554 1.08975 1.22289 1.01615 0.87644 0.97225 1.19088 0.91074 0.94162 0.99237 1.21653 1.01926 0.89863 0.97958 1.21859 0.94232 0.99364 0.94339 1.21690 0.94812 0.98408 0.98073 1.21257 1.01072 0.90889 0.96066 1.20004 0.93887 0.92837 1.09046 1.18644 0.86956 0.84494 0.76313 1.90889 1.14244 1.87220 1.52415 1.43342 1.05766 1.11058 1.66291 0.74075 0.92238 0.99061 0.99057 0.74944 0.84792 0.84802 0.78997 0.80984 0.81090 0.82122 0.85133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.60 13.29 21.45 0.28 -55.32 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.99 41.55 29.54 68.60 2.03 43.57 16 4 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 5 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 7 C -0.56 -29.47 9.28 25.60 0.24 -29.23 16 8 H 0.09 4.12 7.60 -2.91 -0.02 4.10 16 9 C 0.27 14.21 5.43 85.63 0.46 14.67 16 10 N -0.70 -27.71 5.55 -466.76 -2.59 -30.30 16 11 C 0.50 19.04 7.91 87.66 0.69 19.73 16 12 O -0.59 -28.86 16.50 15.76 0.26 -28.60 16 13 C 0.06 1.63 5.96 71.24 0.42 2.05 16 14 O -0.35 -9.72 9.01 -50.78 -0.46 -10.17 16 15 C 0.52 11.89 7.91 70.21 0.56 12.45 16 16 O -0.49 -11.23 15.97 19.75 0.32 -10.92 16 17 C 0.08 1.66 6.75 39.99 0.27 1.93 16 18 C -0.06 -0.95 9.51 23.77 0.23 -0.72 16 19 C -0.03 -0.50 5.89 -20.08 -0.12 -0.62 16 20 C -0.10 -0.69 9.86 22.50 0.22 -0.47 16 21 C -0.08 -0.41 10.01 22.30 0.22 -0.19 16 22 C -0.11 -0.95 10.01 22.33 0.22 -0.73 16 23 C -0.07 -1.21 9.65 22.44 0.22 -0.99 16 24 C -0.15 -3.14 5.90 -19.95 -0.12 -3.26 16 25 C 0.54 14.79 7.92 86.55 0.69 15.47 16 26 O -0.57 -19.56 17.35 -4.48 -0.08 -19.63 16 27 N -0.63 -15.76 5.26 -303.61 -1.60 -17.36 16 28 H 0.42 11.57 8.08 -92.71 -0.75 10.82 16 29 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 30 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 31 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 32 H 0.41 12.92 8.32 -92.71 -0.77 12.15 16 33 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.19 1.79 7.49 -2.91 -0.02 1.77 16 36 H 0.17 0.10 8.06 -2.91 -0.02 0.08 16 37 H 0.17 -0.35 8.06 -2.91 -0.02 -0.37 16 38 H 0.16 0.45 8.06 -2.91 -0.02 0.43 16 39 H 0.13 2.30 7.77 -2.91 -0.02 2.28 16 Total: -1.00 -81.52 355.54 2.45 -79.07 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -0.38 Total: 18.91 kcal Atomic # 6 Polarization: 26.09 SS G_CDS: 4.67 Total: 30.76 kcal Atomic # 7 Polarization: -99.08 SS G_CDS: -3.90 Total: -102.98 kcal Atomic # 8 Polarization: -69.37 SS G_CDS: 0.04 Total: -69.33 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Total: -81.52 2.45 -79.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021591778.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.639 kcal (2) G-P(sol) polarization free energy of solvation -81.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds