Wall clock time and date at job start Tue Mar 31 2020 04:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35755 * 117.00114 * 2 1 4 4 C 1.38909 * 119.60620 * 180.02562 * 3 2 1 5 5 C 1.38317 * 119.18352 * 179.97438 * 4 3 2 6 6 C 1.39392 * 118.42644 * 0.02562 * 5 4 3 7 7 N 1.40066 * 120.42749 * 179.97438 * 6 5 4 8 8 C 1.34783 * 120.00019 * 34.84762 * 7 6 5 9 9 O 1.21620 * 119.99969 * 355.47620 * 8 7 6 10 10 C 1.47401 * 119.99713 * 175.47342 * 8 7 6 11 11 C 1.39687 * 120.22071 * 0.02562 * 10 8 7 12 12 C 1.37804 * 119.93734 * 180.27112 * 11 10 8 13 13 C 1.38654 * 120.38414 * 359.49566 * 12 11 10 14 14 C 1.37918 * 120.43787 * 0.50158 * 13 12 11 15 15 C 1.39103 * 120.05224 * 359.75230 * 14 13 12 16 16 S 1.76202 * 120.19120 * 180.02562 * 15 14 13 17 17 C 1.76198 * 99.99903 * 7.42126 * 16 15 14 18 18 H 1.08008 * 120.00185 * 354.99210 * 17 16 15 19 19 C 1.38805 * 120.00202 * 174.99212 * 17 16 15 20 20 N 1.31553 * 120.00176 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47346 * 90.00098 * 21 19 17 23 23 H 1.48504 * 109.47290 * 210.00007 * 21 19 17 24 24 H 1.48498 * 109.47488 * 329.99717 * 21 19 17 25 25 C 1.38674 * 119.14628 * 0.24683 * 6 5 4 26 26 N 1.31944 * 120.73283 * 359.48183 * 25 6 5 27 27 H 1.09001 * 109.47162 * 299.99887 * 1 2 3 28 28 H 1.08997 * 109.47339 * 59.99924 * 1 2 3 29 29 H 1.08999 * 109.47482 * 179.97438 * 1 2 3 30 30 H 1.07990 * 120.40708 * 0.02562 * 4 3 2 31 31 H 1.08004 * 120.78543 * 179.97438 * 5 4 3 32 32 H 0.97000 * 120.00194 * 214.85103 * 7 6 5 33 33 H 1.07999 * 120.02846 * 359.97438 * 11 10 8 34 34 H 1.08005 * 119.80341 * 179.74064 * 12 11 10 35 35 H 1.07998 * 119.78298 * 180.25881 * 13 12 11 36 36 H 1.08000 * 119.97250 * 179.77169 * 14 13 12 37 37 H 0.96998 * 120.00413 * 180.02562 * 20 19 17 38 38 H 1.08006 * 119.63675 * 179.73077 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 3.4329 1.2727 -0.0005 5 6 4.0518 2.5097 -0.0011 6 6 3.2524 3.6516 -0.0005 7 7 3.8349 4.9254 -0.0005 8 6 4.9861 5.1399 -0.6679 9 8 5.5621 4.2109 -1.2010 10 6 5.5468 6.5006 -0.7516 11 6 4.8892 7.5708 -0.1405 12 6 5.4156 8.8414 -0.2272 13 6 6.6019 9.0639 -0.9096 14 6 7.2643 8.0187 -1.5186 15 6 6.7465 6.7296 -1.4470 16 16 7.5900 5.3915 -2.2232 17 6 9.0728 6.2075 -2.7131 18 1 9.1782 7.2720 -2.5636 19 6 10.1056 5.4824 -3.2913 20 7 9.9775 4.1858 -3.4731 21 14 11.6778 6.3475 -3.8101 22 1 12.6409 6.3439 -2.6797 23 1 12.2738 5.6375 -4.9703 24 1 11.3689 7.7486 -4.1927 25 6 1.8729 3.5103 0.0058 26 7 1.3176 2.3134 0.0009 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 4.0213 0.3672 -0.0014 31 1 5.1289 2.5889 -0.0011 32 1 3.4100 5.6531 0.4799 33 1 3.9665 7.4034 0.3953 34 1 4.9032 9.6680 0.2425 35 1 7.0080 10.0630 -0.9679 36 1 8.1859 8.2012 -2.0513 37 1 10.6994 3.6790 -3.8768 38 1 1.2459 4.3898 0.0107 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021706951.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:38 Heat of formation + Delta-G solvation = 3.492294 kcal Electronic energy + Delta-G solvation = -24233.015746 eV Core-core repulsion = 20553.682094 eV Total energy + Delta-G solvation = -3679.333652 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.082 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.87953 -39.66491 -38.08115 -37.30827 -34.62024 -32.83111 -32.30349 -31.04873 -30.39045 -29.17774 -27.22771 -25.90677 -24.05095 -23.59812 -22.47030 -21.92516 -20.25614 -18.69846 -18.32825 -17.57525 -17.01593 -16.68159 -16.04893 -15.85557 -15.27836 -14.84181 -14.74341 -14.47705 -14.27618 -13.99594 -13.88063 -13.41159 -13.32426 -13.13907 -12.97187 -12.59022 -12.15630 -11.94761 -11.68450 -11.40642 -11.30334 -11.24881 -11.00720 -10.44998 -10.38988 -10.03561 -9.85116 -9.71430 -9.62085 -9.34195 -8.82425 -8.48546 -8.18365 -7.88107 -6.63643 -6.53321 -4.25144 1.05524 1.27056 1.48798 1.92104 3.00884 3.04917 3.08366 3.15443 3.24871 3.29531 3.35314 3.81593 3.99440 4.28718 4.36466 4.85518 4.88237 4.96459 5.03125 5.07608 5.19623 5.19962 5.23381 5.36158 5.47579 5.50922 5.64416 5.75839 5.83781 6.00447 6.14122 6.27374 6.33028 6.48373 6.71729 6.74854 6.91161 7.03383 7.22050 7.36673 7.49986 7.58981 7.79853 8.09017 8.50570 8.92953 10.49775 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.014678 B = 0.003189 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.096465 B = 8778.468967 C =10575.214512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.311 6.311 3 C 0.293 3.707 4 C -0.166 4.166 5 C -0.043 4.043 6 C 0.078 3.922 7 N -0.673 5.673 8 C 0.552 3.448 9 O -0.492 6.492 10 C -0.181 4.181 11 C -0.059 4.059 12 C -0.185 4.185 13 C -0.074 4.074 14 C -0.152 4.152 15 C -0.056 4.056 16 S 0.190 5.810 17 C -0.597 4.597 18 H 0.092 0.908 19 C 0.084 3.916 20 N -0.856 5.856 21 Si 0.920 3.080 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.267 1.267 25 C 0.106 3.894 26 N -0.524 5.524 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.144 0.856 31 H 0.162 0.838 32 H 0.407 0.593 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.140 0.860 37 H 0.276 0.724 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.915 0.665 8.404 17.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.218 6.218 3 C 0.113 3.887 4 C -0.187 4.187 5 C -0.071 4.071 6 C -0.020 4.020 7 N -0.320 5.320 8 C 0.343 3.657 9 O -0.368 6.368 10 C -0.196 4.196 11 C -0.079 4.079 12 C -0.210 4.210 13 C -0.096 4.096 14 C -0.177 4.177 15 C -0.176 4.176 16 S 0.456 5.544 17 C -0.744 4.744 18 H 0.110 0.890 19 C -0.127 4.127 20 N -0.488 5.488 21 Si 0.745 3.255 22 H -0.198 1.198 23 H -0.204 1.204 24 H -0.192 1.192 25 C -0.052 4.052 26 N -0.247 5.247 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.111 0.889 30 H 0.162 0.838 31 H 0.179 0.821 32 H 0.244 0.756 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.157 0.843 37 H 0.086 0.914 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -15.219 -1.938 7.525 17.088 hybrid contribution 1.681 2.540 0.088 3.047 sum -13.538 0.603 7.613 15.543 Atomic orbital electron populations 1.22794 0.77704 1.02600 1.02257 1.86242 1.22508 1.24611 1.88429 1.19769 0.89423 0.84486 0.94978 1.21045 0.91642 0.99423 1.06612 1.21747 1.02293 0.89664 0.93389 1.18616 0.92763 0.86254 1.04341 1.43333 1.25829 1.09467 1.53420 1.18476 0.79790 0.89404 0.78005 1.90783 1.57505 1.43716 1.44839 1.18903 0.99375 0.91818 1.09510 1.20891 0.97614 0.92631 0.96807 1.20645 0.98454 0.96305 1.05569 1.21116 0.94617 0.98243 0.95637 1.21449 1.01885 0.91553 1.02788 1.23072 0.96522 1.00762 0.97239 1.84678 1.10195 1.05554 1.54015 1.24062 1.03794 0.98734 1.47793 0.89008 1.25104 0.98908 0.94774 0.93927 1.69963 1.33601 1.06216 1.39047 0.86130 0.81146 0.79683 0.78514 1.19797 1.20423 1.19190 1.22104 0.90755 0.94172 0.98175 1.67198 1.40227 0.98297 1.18964 0.92528 0.92480 0.88939 0.83829 0.82050 0.75563 0.87073 0.86895 0.86872 0.84267 0.91407 0.82388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.38 101.05 1.05 1.43 16 2 O -0.31 -3.94 10.48 -18.97 -0.20 -4.14 16 3 C 0.29 4.05 7.49 -17.14 -0.13 3.92 16 4 C -0.17 -2.29 10.03 -39.30 -0.39 -2.69 16 5 C -0.04 -0.65 8.80 -39.12 -0.34 -1.00 16 6 C 0.08 1.07 6.32 -83.50 -0.53 0.55 16 7 N -0.67 -9.08 5.30 -10.72 -0.06 -9.13 16 8 C 0.55 9.95 7.61 -12.53 -0.10 9.85 16 9 O -0.49 -10.63 11.24 5.26 0.06 -10.57 16 10 C -0.18 -3.32 5.89 -104.76 -0.62 -3.93 16 11 C -0.06 -0.86 9.53 -39.20 -0.37 -1.23 16 12 C -0.19 -2.63 10.02 -39.59 -0.40 -3.03 16 13 C -0.07 -1.18 10.03 -39.54 -0.40 -1.58 16 14 C -0.15 -3.01 9.25 -39.38 -0.36 -3.37 16 15 C -0.06 -1.21 6.14 -38.39 -0.24 -1.44 16 16 S 0.19 4.88 18.56 -107.50 -2.00 2.88 16 17 C -0.60 -15.94 9.08 30.94 0.28 -15.66 16 18 H 0.09 2.31 4.84 -52.48 -0.25 2.06 16 19 C 0.08 2.25 5.49 -17.46 -0.10 2.15 16 20 N -0.86 -24.07 13.22 55.49 0.73 -23.33 16 21 Si 0.92 20.18 29.55 -169.99 -5.02 15.16 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 C 0.11 1.29 11.11 -17.34 -0.19 1.10 16 26 N -0.52 -6.99 9.20 -13.17 -0.12 -7.11 16 27 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 28 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.14 1.74 8.06 -52.49 -0.42 1.31 16 31 H 0.16 2.69 6.31 -52.48 -0.33 2.36 16 32 H 0.41 4.02 6.87 -40.82 -0.28 3.74 16 33 H 0.11 1.14 6.41 -52.49 -0.34 0.80 16 34 H 0.11 1.25 8.06 -52.48 -0.42 0.83 16 35 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.14 2.89 4.97 -52.49 -0.26 2.63 16 37 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.16 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 340.35 15.07 5.13 5.13 Total: -1.00 -31.58 340.35 -7.86 -39.44 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -3.55 Total: 6.59 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -2.83 Total: -14.92 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.56 Total: -39.58 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.14 Total: -14.71 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: 4.88 SS G_CDS: -2.00 Total: 2.88 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.58 -7.86 -39.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021706951.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.930 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds