Wall clock time and date at job start Tue Mar 31 2020 04:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86800 * 120.00090 * 2 1 4 4 H 1.48508 * 109.46709 * 269.99546 * 3 2 1 5 5 H 1.48499 * 109.47130 * 29.99626 * 3 2 1 6 6 H 1.48501 * 109.47173 * 150.00002 * 3 2 1 7 7 C 1.38755 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99896 * 180.02562 * 7 2 1 9 9 O 1.34919 * 119.99904 * 0.02562 * 7 2 1 10 10 C 1.34314 * 116.99608 * 180.02562 * 9 7 2 11 11 O 1.21212 * 120.00188 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99838 * 180.02562 * 10 9 7 13 13 N 1.46503 * 109.47062 * 179.97438 * 12 10 9 14 14 C 1.33948 * 124.20991 * 89.97468 * 13 12 10 15 15 O 1.21542 * 123.80904 * 359.97438 * 14 13 12 16 16 N 1.34858 * 112.38968 * 180.02562 * 14 13 12 17 17 C 1.46307 * 106.18033 * 0.02562 * 16 14 13 18 18 C 1.53402 * 111.40877 * 239.71744 * 17 16 14 19 19 C 1.54547 * 102.15234 * 212.41078 * 18 17 16 20 20 C 1.51460 * 105.21748 * 25.46932 * 19 18 17 21 21 C 1.38441 * 130.36362 * 163.32199 * 20 19 18 22 22 C 1.38097 * 120.29183 * 180.02562 * 21 20 19 23 23 C 1.38250 * 119.89072 * 359.45192 * 22 21 20 24 24 C 1.38061 * 119.94717 * 0.56298 * 23 22 21 25 25 C 1.38474 * 109.78366 * 343.19501 * 20 19 18 26 26 C 1.35075 * 124.21520 * 270.01503 * 13 12 10 27 27 O 1.21230 * 127.37569 * 359.97438 * 26 13 12 28 28 H 0.97006 * 119.99837 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46891 * 59.99486 * 12 10 9 30 30 H 1.08998 * 109.47055 * 299.99838 * 12 10 9 31 31 H 0.96996 * 126.90481 * 180.02562 * 16 14 13 32 32 H 1.09002 * 110.86405 * 330.57560 * 18 17 16 33 33 H 1.08998 * 110.86807 * 94.03920 * 18 17 16 34 34 H 1.08991 * 110.29608 * 266.53204 * 19 18 17 35 35 H 1.09003 * 110.29474 * 144.40047 * 19 18 17 36 36 H 1.08002 * 119.85010 * 359.79581 * 21 20 19 37 37 H 1.08003 * 120.05050 * 179.69918 * 22 21 20 38 38 H 1.07999 * 120.02507 * 180.30081 * 23 22 21 39 39 H 1.07996 * 119.83354 * 179.73472 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4960 2.0463 -1.4002 5 1 1.4459 2.6527 0.7000 6 1 3.5460 1.4401 0.7000 7 6 2.0081 -1.2017 0.0005 8 1 3.0881 -1.2017 0.0010 9 8 1.3335 -2.3701 0.0005 10 6 2.0650 -3.4965 0.0016 11 8 3.2755 -3.4331 0.0020 12 6 1.3808 -4.8393 0.0011 13 7 2.3898 -5.9015 0.0019 14 6 2.9080 -6.4471 1.1100 15 8 2.5946 -6.1166 2.2368 16 7 3.8176 -7.4039 0.8344 17 6 3.8956 -7.4842 -0.6244 18 6 3.5262 -8.8851 -1.1285 19 6 4.4176 -9.0249 -2.3833 20 6 5.5934 -8.1015 -2.1405 21 6 6.8308 -8.0440 -2.7587 22 6 7.7625 -7.1034 -2.3659 23 6 7.4550 -6.2077 -1.3588 24 6 6.2219 -6.2629 -0.7402 25 6 5.2875 -7.2099 -1.1262 26 6 2.9140 -6.4519 -1.1147 27 8 2.6511 -6.1745 -2.2652 28 1 -0.4850 0.8401 -0.0004 29 1 0.7590 -4.9298 -0.8896 30 1 0.7571 -4.9295 0.8904 31 1 4.3193 -7.9324 1.4746 32 1 3.7778 -9.6434 -0.3870 33 1 2.4696 -8.9371 -1.3913 34 1 3.8699 -8.7137 -3.2727 35 1 4.7609 -10.0539 -2.4904 36 1 7.0697 -8.7401 -3.5490 37 1 8.7285 -7.0651 -2.8476 38 1 8.1802 -5.4681 -1.0532 39 1 5.9852 -5.5650 0.0493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021973103.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:23 Heat of formation + Delta-G solvation = -78.306331 kcal Electronic energy + Delta-G solvation = -28417.425106 eV Core-core repulsion = 24291.791528 eV Total energy + Delta-G solvation = -4125.633578 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.79171 -39.98606 -38.89728 -38.43557 -36.55633 -35.71009 -34.98204 -33.73244 -32.16961 -31.13842 -29.30199 -28.87719 -27.20356 -25.24607 -23.50042 -23.02865 -22.12605 -21.26873 -20.70402 -19.85225 -18.01643 -17.79588 -17.36231 -17.07244 -16.12562 -15.90143 -15.79139 -15.43784 -15.35266 -15.03373 -14.73074 -14.46097 -14.40810 -14.17207 -13.97377 -13.65467 -13.50040 -12.88212 -12.51931 -12.31119 -12.24618 -12.22084 -11.84915 -11.66308 -11.59356 -11.14882 -11.07537 -10.85432 -10.45030 -10.41065 -10.17727 -10.09583 -9.83623 -9.59329 -9.01111 -8.96902 -8.79162 -8.59344 -6.42526 -4.10373 0.99395 1.22912 1.66986 2.21348 2.99484 3.09173 3.10843 3.19790 3.25981 3.44335 3.50797 3.85718 3.94286 4.03647 4.14796 4.53010 4.63853 4.72166 4.86344 4.90896 4.96186 5.04677 5.20412 5.28936 5.38865 5.40944 5.46691 5.52670 5.60576 5.66280 5.71150 5.82067 5.91649 6.24542 6.34498 6.36774 6.60188 6.74861 6.78218 7.08469 7.37222 7.41606 7.92174 8.16542 8.64138 9.05611 9.77275 10.75050 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.015561 B = 0.003684 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.949225 B = 7597.997365 C = 8447.980016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.043 3.957 3 Si 0.945 3.055 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.381 4.381 8 H 0.096 0.904 9 O -0.207 6.207 10 C 0.383 3.617 11 O -0.547 6.547 12 C 0.135 3.865 13 N -0.558 5.558 14 C 0.710 3.290 15 O -0.533 6.533 16 N -0.716 5.716 17 C 0.166 3.834 18 C -0.109 4.109 19 C -0.081 4.081 20 C -0.073 4.073 21 C -0.114 4.114 22 C -0.103 4.103 23 C -0.122 4.122 24 C -0.071 4.071 25 C -0.109 4.109 26 C 0.544 3.456 27 O -0.451 6.451 28 H 0.270 0.730 29 H 0.125 0.875 30 H 0.128 0.872 31 H 0.439 0.561 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.120 -20.726 -3.927 23.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.161 4.161 3 Si 0.769 3.231 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.457 4.457 8 H 0.113 0.887 9 O -0.113 6.113 10 C 0.228 3.772 11 O -0.444 6.444 12 C 0.013 3.987 13 N -0.304 5.304 14 C 0.411 3.589 15 O -0.405 6.405 16 N -0.381 5.381 17 C 0.075 3.925 18 C -0.148 4.148 19 C -0.119 4.119 20 C -0.074 4.074 21 C -0.132 4.132 22 C -0.121 4.121 23 C -0.140 4.140 24 C -0.090 4.090 25 C -0.110 4.110 26 C 0.330 3.670 27 O -0.319 6.319 28 H 0.080 0.920 29 H 0.143 0.857 30 H 0.146 0.854 31 H 0.284 0.716 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.804 -20.091 -3.944 22.701 hybrid contribution 0.701 0.851 0.328 1.150 sum 10.505 -19.240 -3.616 22.217 Atomic orbital electron populations 1.69991 1.05982 1.27801 1.46163 1.25343 0.95854 0.98831 0.96066 0.85656 0.79054 0.79625 0.78758 1.19819 1.20223 1.19097 1.21225 0.92403 0.79539 1.52525 0.88656 1.83845 1.39096 1.13151 1.75246 1.23111 0.87050 0.87365 0.79666 1.90566 1.15405 1.87782 1.50678 1.20853 0.88356 0.82191 1.07344 1.46013 1.40692 1.35688 1.08022 1.15899 0.79481 0.79397 0.84167 1.91021 1.64157 1.65051 1.20254 1.45399 1.44729 1.41564 1.06376 1.20085 0.93431 0.96994 0.81990 1.22455 1.01486 0.92772 0.98064 1.21123 0.93190 0.99133 0.98415 1.20542 0.94796 0.96637 0.95430 1.20549 0.92503 0.99789 1.00322 1.21139 0.99270 0.94887 0.96845 1.21069 0.96627 0.99391 0.96890 1.20725 0.92658 0.96250 0.99335 1.19849 0.93289 0.98597 0.99299 1.20272 0.80331 0.81358 0.85030 1.90790 1.60720 1.62864 1.17495 0.91972 0.85669 0.85419 0.71589 0.88545 0.89079 0.88828 0.89579 0.85820 0.85540 0.85385 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 2 C 0.04 1.24 5.49 -17.53 -0.10 1.15 16 3 Si 0.94 21.71 29.55 -169.99 -5.02 16.69 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.38 -11.52 9.65 30.92 0.30 -11.22 16 8 H 0.10 2.92 6.86 -52.49 -0.36 2.56 16 9 O -0.21 -6.05 9.75 -20.71 -0.20 -6.25 16 10 C 0.38 9.82 7.97 36.01 0.29 10.11 16 11 O -0.55 -15.23 15.67 -19.05 -0.30 -15.53 16 12 C 0.14 2.60 6.30 -5.19 -0.03 2.56 16 13 N -0.56 -9.91 2.10 -122.16 -0.26 -10.17 16 14 C 0.71 12.03 8.64 -87.58 -0.76 11.27 16 15 O -0.53 -10.70 17.49 5.33 0.09 -10.61 16 16 N -0.72 -8.84 5.95 -54.85 -0.33 -9.17 16 17 C 0.17 2.08 1.16 -134.15 -0.16 1.93 16 18 C -0.11 -0.93 6.36 -25.71 -0.16 -1.09 16 19 C -0.08 -0.67 6.78 -26.70 -0.18 -0.85 16 20 C -0.07 -0.79 6.15 -104.09 -0.64 -1.43 16 21 C -0.11 -1.09 10.03 -39.56 -0.40 -1.48 16 22 C -0.10 -1.00 10.05 -39.63 -0.40 -1.40 16 23 C -0.12 -1.40 10.04 -39.64 -0.40 -1.79 16 24 C -0.07 -0.98 10.02 -39.54 -0.40 -1.38 16 25 C -0.11 -1.41 5.23 -104.54 -0.55 -1.96 16 26 C 0.54 9.04 6.89 -10.87 -0.07 8.96 16 27 O -0.45 -8.46 17.78 5.60 0.10 -8.36 16 28 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.13 2.11 8.02 -51.93 -0.42 1.69 16 30 H 0.13 2.21 7.87 -51.93 -0.41 1.81 16 31 H 0.44 4.08 8.96 -40.82 -0.37 3.71 16 32 H 0.10 0.59 8.12 -51.93 -0.42 0.17 16 33 H 0.09 0.72 7.88 -51.93 -0.41 0.32 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 38 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 39 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 348.57 15.07 5.25 5.25 Total: -1.00 -38.02 348.57 -7.61 -45.63 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -4.05 Total: 3.88 kcal Atomic # 6 Polarization: 17.03 SS G_CDS: -3.65 Total: 13.38 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.17 Total: -44.09 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -0.31 Total: -40.74 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -38.02 -7.61 -45.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021973103.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.679 kcal (2) G-P(sol) polarization free energy of solvation -38.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds