Wall clock time and date at job start Tue Mar 31 2020 04:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86801 * 120.00056 * 2 1 4 4 H 1.48493 * 109.47517 * 270.00477 * 3 2 1 5 5 H 1.48506 * 109.46752 * 30.00270 * 3 2 1 6 6 H 1.48502 * 109.47209 * 149.99929 * 3 2 1 7 7 C 1.38757 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99741 * 359.97438 * 7 2 1 9 9 O 1.34917 * 119.99991 * 179.97438 * 7 2 1 10 10 C 1.34303 * 117.00310 * 179.97438 * 9 7 2 11 11 O 1.21212 * 119.99767 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00309 * 180.02562 * 10 9 7 13 13 N 1.46508 * 109.47155 * 179.97438 * 12 10 9 14 14 C 1.33952 * 124.21077 * 269.97207 * 13 12 10 15 15 O 1.21538 * 123.80665 * 0.08168 * 14 13 12 16 16 N 1.34859 * 112.38694 * 180.02562 * 14 13 12 17 17 C 1.46305 * 106.17913 * 359.71605 * 16 14 13 18 18 C 1.53407 * 111.29500 * 120.61459 * 17 16 14 19 19 C 1.54551 * 102.17502 * 147.61229 * 18 17 16 20 20 C 1.51461 * 105.20608 * 334.56288 * 19 18 17 21 21 C 1.38436 * 130.35772 * 196.66184 * 20 19 18 22 22 C 1.38081 * 120.30262 * 180.19858 * 21 20 19 23 23 C 1.38260 * 119.88968 * 0.04351 * 22 21 20 24 24 C 1.38056 * 119.94403 * 359.92552 * 23 22 21 25 25 C 1.38482 * 109.79314 * 16.78907 * 20 19 18 26 26 C 1.35087 * 124.21312 * 89.99977 * 13 12 10 27 27 O 1.21233 * 127.37512 * 359.95239 * 26 13 12 28 28 H 0.97000 * 119.99805 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47494 * 59.99646 * 12 10 9 30 30 H 1.09001 * 109.46820 * 299.99394 * 12 10 9 31 31 H 0.97004 * 126.90541 * 180.02562 * 16 14 13 32 32 H 1.08996 * 110.86206 * 265.78071 * 18 17 16 33 33 H 1.09008 * 110.86238 * 29.44156 * 18 17 16 34 34 H 1.09002 * 110.29789 * 215.63595 * 19 18 17 35 35 H 1.09001 * 110.38075 * 93.54255 * 19 18 17 36 36 H 1.07997 * 119.84588 * 0.22813 * 21 20 19 37 37 H 1.07995 * 120.05864 * 180.02562 * 22 21 20 38 38 H 1.08004 * 120.02460 * 179.90883 * 23 22 21 39 39 H 1.08000 * 119.83440 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.4959 2.0465 -1.4000 5 1 1.4458 2.6526 0.7001 6 1 3.5460 1.4402 0.7001 7 6 2.0082 -1.2017 -0.0005 8 1 1.4682 -2.1369 -0.0005 9 8 3.3574 -1.2017 -0.0011 10 6 3.9672 -2.3983 -0.0010 11 8 3.3070 -3.4149 -0.0001 12 6 5.4721 -2.4772 -0.0010 13 7 5.8875 -3.8821 -0.0004 14 6 6.1016 -4.6037 1.1077 15 8 5.9717 -4.1672 2.2345 16 7 6.4762 -5.8695 0.8320 17 6 6.5007 -5.9788 -0.6268 18 6 7.8962 -6.3657 -1.1331 19 6 7.5664 -7.2077 -2.3864 20 6 6.1767 -7.7578 -2.1410 21 6 5.5027 -8.7982 -2.7571 22 6 4.2197 -9.1260 -2.3656 23 6 3.6043 -8.4118 -1.3543 24 6 4.2741 -7.3741 -0.7375 25 6 5.5619 -7.0432 -1.1265 26 6 6.1028 -4.6111 -1.1171 27 8 5.9935 -4.2446 -2.2676 28 1 -0.4850 0.8401 0.0004 29 1 5.8619 -1.9830 0.8890 30 1 5.8618 -1.9832 -0.8911 31 1 6.6830 -6.5684 1.4722 32 1 8.4713 -5.4794 -1.4012 33 1 8.4260 -6.9640 -0.3918 34 1 8.2821 -8.0228 -2.4935 35 1 7.5727 -6.5803 -3.2777 36 1 5.9827 -9.3564 -3.5473 37 1 3.6977 -9.9387 -2.8487 38 1 2.6004 -8.6653 -1.0473 39 1 3.7919 -6.8176 0.0526 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021973105.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:27 Heat of formation + Delta-G solvation = -75.238804 kcal Electronic energy + Delta-G solvation = -28457.083828 eV Core-core repulsion = 24331.583268 eV Total energy + Delta-G solvation = -4125.500560 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.85451 -40.03141 -39.10485 -38.50451 -36.60944 -35.84499 -35.11040 -33.80467 -32.32950 -31.15678 -29.31851 -29.04713 -27.25594 -25.33616 -23.55174 -23.04901 -22.08694 -21.28404 -20.70049 -19.82154 -18.14699 -17.93929 -17.48605 -17.14886 -16.22783 -15.96253 -15.85310 -15.50991 -15.38540 -15.10497 -14.93080 -14.70947 -14.46693 -14.05322 -13.74590 -13.66692 -13.48187 -12.89648 -12.50934 -12.44519 -12.43412 -12.24927 -12.09481 -11.88100 -11.62521 -11.18883 -11.08575 -10.91398 -10.52966 -10.42979 -10.24397 -10.13331 -9.73192 -9.64290 -9.12887 -9.00868 -8.80435 -8.69589 -6.38237 -4.14463 0.97668 1.22250 1.60582 2.12863 2.93346 3.03279 3.09021 3.24980 3.32066 3.38652 3.48983 3.82770 3.97139 4.08692 4.13661 4.24550 4.61362 4.69776 4.84510 4.86976 4.95842 4.98807 5.14640 5.27915 5.33299 5.36441 5.38931 5.45830 5.51324 5.60716 5.65662 5.77786 5.90577 6.21305 6.24012 6.33300 6.36359 6.69549 6.77535 7.00229 7.33880 7.67322 8.01179 8.10145 8.55071 8.98599 9.59973 10.69924 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.016891 B = 0.003682 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.248571 B = 7602.435128 C = 8254.255481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.067 3.933 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.258 1.258 7 C -0.381 4.381 8 H 0.109 0.891 9 O -0.245 6.245 10 C 0.394 3.606 11 O -0.530 6.530 12 C 0.134 3.866 13 N -0.559 5.559 14 C 0.710 3.290 15 O -0.532 6.532 16 N -0.715 5.715 17 C 0.167 3.833 18 C -0.109 4.109 19 C -0.082 4.082 20 C -0.073 4.073 21 C -0.114 4.114 22 C -0.102 4.102 23 C -0.121 4.121 24 C -0.071 4.071 25 C -0.110 4.110 26 C 0.544 3.456 27 O -0.450 6.450 28 H 0.280 0.720 29 H 0.129 0.871 30 H 0.127 0.873 31 H 0.440 0.560 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.151 -16.816 -3.933 25.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.137 4.137 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.182 1.182 7 C -0.456 4.456 8 H 0.127 0.873 9 O -0.153 6.153 10 C 0.238 3.762 11 O -0.424 6.424 12 C 0.011 3.989 13 N -0.306 5.306 14 C 0.411 3.589 15 O -0.404 6.404 16 N -0.380 5.380 17 C 0.076 3.924 18 C -0.147 4.147 19 C -0.119 4.119 20 C -0.074 4.074 21 C -0.132 4.132 22 C -0.121 4.121 23 C -0.139 4.139 24 C -0.089 4.089 25 C -0.112 4.112 26 C 0.330 3.670 27 O -0.317 6.317 28 H 0.090 0.910 29 H 0.147 0.853 30 H 0.145 0.855 31 H 0.285 0.715 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 17.610 -16.346 -3.954 24.350 hybrid contribution -0.101 0.479 0.319 0.584 sum 17.509 -15.867 -3.634 23.907 Atomic orbital electron populations 1.69606 1.05723 1.28491 1.47288 1.24545 0.95022 0.98713 0.95412 0.86216 0.80381 0.81383 0.78987 1.19748 1.20657 1.18243 1.20634 0.75809 0.97064 1.52110 0.87300 1.83473 1.24271 1.30597 1.76917 1.22905 0.90302 0.83339 0.79646 1.90613 1.66419 1.36254 1.49155 1.20856 0.91745 0.78839 1.07440 1.46006 1.62842 1.13576 1.08168 1.15890 0.77227 0.81704 0.84104 1.91024 1.55751 1.73455 1.20208 1.45404 1.73869 1.12263 1.06422 1.20075 0.97125 0.93277 0.81957 1.22461 0.92832 1.01376 0.98078 1.21127 0.93041 0.99330 0.98382 1.20534 0.96347 0.95072 0.95459 1.20544 0.94944 0.97330 1.00354 1.21147 0.94692 0.99455 0.96760 1.21087 1.00127 0.95899 0.96797 1.20732 0.92575 0.96275 0.99347 1.19834 0.95047 0.96912 0.99392 1.20301 0.75444 0.86240 0.84987 1.90795 1.47562 1.75919 1.17463 0.90950 0.85281 0.85530 0.71505 0.89106 0.88493 0.89577 0.88844 0.85815 0.85500 0.85309 0.85644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.16 13.96 55.48 0.77 -25.38 16 2 C 0.07 1.95 5.49 -17.53 -0.10 1.86 16 3 Si 0.91 21.55 28.62 -169.99 -4.86 16.69 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.26 -5.98 7.11 56.52 0.40 -5.57 16 7 C -0.38 -11.56 10.10 30.92 0.31 -11.25 16 8 H 0.11 3.66 7.09 -52.49 -0.37 3.28 16 9 O -0.24 -6.58 8.58 -20.67 -0.18 -6.76 16 10 C 0.39 9.60 7.97 36.01 0.29 9.88 16 11 O -0.53 -14.53 15.67 -19.05 -0.30 -14.83 16 12 C 0.13 2.38 6.30 -5.19 -0.03 2.34 16 13 N -0.56 -9.44 2.11 -122.16 -0.26 -9.70 16 14 C 0.71 11.53 8.64 -87.58 -0.76 10.77 16 15 O -0.53 -10.29 17.49 5.33 0.09 -10.20 16 16 N -0.72 -8.46 5.95 -54.85 -0.33 -8.79 16 17 C 0.17 2.01 1.16 -134.15 -0.16 1.86 16 18 C -0.11 -0.87 6.36 -25.71 -0.16 -1.04 16 19 C -0.08 -0.64 6.78 -26.69 -0.18 -0.82 16 20 C -0.07 -0.77 6.15 -104.08 -0.64 -1.41 16 21 C -0.11 -1.08 10.03 -39.57 -0.40 -1.47 16 22 C -0.10 -1.00 10.05 -39.63 -0.40 -1.40 16 23 C -0.12 -1.40 10.04 -39.64 -0.40 -1.80 16 24 C -0.07 -0.97 10.02 -39.54 -0.40 -1.37 16 25 C -0.11 -1.40 5.23 -104.54 -0.55 -1.95 16 26 C 0.54 8.65 6.89 -10.87 -0.07 8.58 16 27 O -0.45 -8.09 17.79 5.60 0.10 -7.99 16 28 H 0.28 7.65 8.31 -40.82 -0.34 7.31 16 29 H 0.13 2.00 7.87 -51.93 -0.41 1.59 16 30 H 0.13 1.88 8.02 -51.93 -0.42 1.47 16 31 H 0.44 3.89 8.96 -40.82 -0.37 3.53 16 32 H 0.09 0.67 7.88 -51.93 -0.41 0.26 16 33 H 0.10 0.55 8.12 -51.92 -0.42 0.13 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 39 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 347.44 15.07 5.24 5.24 Total: -1.00 -37.78 347.44 -7.42 -45.20 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -4.06 Total: 3.72 kcal Atomic # 6 Polarization: 16.43 SS G_CDS: -3.64 Total: 12.79 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.19 Total: -43.87 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -0.28 Total: -39.77 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.86 Total: 16.69 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -37.78 -7.42 -45.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021973105.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.035 kcal (2) G-P(sol) polarization free energy of solvation -37.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds