Wall clock time and date at job start Tue Mar 31 2020 05:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99709 * 2 1 4 4 H 1.48508 * 109.46932 * 239.99613 * 3 2 1 5 5 H 1.48499 * 109.47604 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47026 * 120.00149 * 3 2 1 7 7 C 1.37870 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99785 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00376 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47277 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00041 * 179.97438 * 10 9 7 12 12 O 1.21287 * 120.00153 * 359.97438 * 11 10 9 13 13 C 1.50702 * 120.00289 * 179.97438 * 11 10 9 14 14 O 1.45195 * 109.47118 * 180.02562 * 13 11 10 15 15 C 1.34727 * 117.00024 * 180.02562 * 14 13 11 16 16 O 1.21479 * 119.99770 * 359.97438 * 15 14 13 17 17 C 1.47632 * 120.00120 * 179.97438 * 15 14 13 18 18 C 1.40644 * 126.05187 * 179.97438 * 17 15 14 19 19 N 1.31235 * 106.62565 * 179.97438 * 18 17 15 20 20 N 1.40106 * 107.19020 * 0.02562 * 19 18 17 21 21 C 1.40131 * 125.56528 * 180.02562 * 20 19 18 22 22 C 1.38868 * 120.06600 * 0.02562 * 21 20 19 23 23 C 1.38115 * 119.92822 * 180.02562 * 22 21 20 24 24 C 1.38286 * 120.07147 * 0.02562 * 23 22 21 25 25 C 1.38279 * 120.13498 * 359.97438 * 24 23 22 26 26 C 1.38117 * 120.07170 * 0.02562 * 25 24 23 27 27 N 1.28717 * 108.87756 * 0.25690 * 20 19 18 28 28 H 0.97001 * 119.99986 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47317 * 59.99413 * 9 7 2 30 30 H 1.09007 * 109.46674 * 299.99383 * 9 7 2 31 31 H 0.96998 * 120.00563 * 359.97438 * 10 9 7 32 32 H 1.08998 * 109.47030 * 59.99869 * 13 11 10 33 33 H 1.08999 * 109.47059 * 300.00145 * 13 11 10 34 34 H 1.08002 * 126.69004 * 359.97438 * 18 17 15 35 35 H 1.07998 * 120.03345 * 0.30287 * 22 21 20 36 36 H 1.08000 * 119.96157 * 180.02562 * 23 22 21 37 37 H 1.07998 * 119.92818 * 179.97438 * 24 23 22 38 38 H 1.08003 * 119.96178 * 179.97438 * 25 24 23 39 39 H 1.07999 * 120.03026 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 1.7538 -4.8833 0.0011 12 8 0.5614 -5.1050 0.0020 13 6 2.7331 -6.0288 0.0005 14 8 2.0071 -7.2862 0.0006 15 6 2.7408 -8.4161 0.0007 16 8 3.9540 -8.3525 0.0001 17 6 2.0706 -9.7315 0.0013 18 6 2.7080 -10.9853 0.0010 19 7 1.7572 -11.8898 0.0024 20 7 0.5346 -11.2055 0.0031 21 6 -0.7334 -11.8022 0.0051 22 6 -0.8512 -13.1858 0.0072 23 6 -2.1023 -13.7708 0.0087 24 6 -3.2369 -12.9803 0.0075 25 6 -3.1228 -11.6022 0.0054 26 6 -1.8745 -11.0111 0.0039 27 7 0.7660 -9.9394 -0.0034 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8904 31 1 3.1567 -3.4354 0.0002 32 1 3.3604 -5.9709 0.8899 33 1 3.3591 -5.9712 -0.8900 34 1 3.7724 -11.1680 -0.0003 35 1 0.0345 -13.8037 0.0122 36 1 -2.1946 -14.8469 0.0107 37 1 -4.2141 -13.4402 0.0082 38 1 -4.0108 -10.9875 0.0041 39 1 -1.7862 -9.9347 0.0027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023075557.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:00 Heat of formation + Delta-G solvation = 24.935931 kcal Electronic energy + Delta-G solvation = -25704.434297 eV Core-core repulsion = 21615.570391 eV Total energy + Delta-G solvation = -4088.863906 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.14601 -40.47752 -39.58150 -38.68498 -36.47026 -34.34811 -34.25223 -32.95592 -32.41296 -31.44635 -30.28126 -29.13928 -26.83149 -25.44382 -24.14284 -22.95931 -22.40112 -21.82399 -20.93837 -19.95485 -18.85036 -18.06690 -17.46001 -17.08693 -16.77129 -16.44347 -16.34769 -15.74441 -15.52150 -15.13904 -14.93982 -14.61678 -14.53724 -14.27403 -13.96281 -13.43958 -13.15097 -12.99683 -12.64962 -12.57501 -12.09278 -11.99287 -11.86184 -11.78937 -11.34073 -11.25051 -11.06036 -11.00225 -10.91723 -10.76355 -10.69454 -10.34887 -9.53736 -9.45819 -9.18874 -8.81242 -8.78079 -7.99153 -6.19586 -4.27174 0.04587 0.81479 1.09841 1.36061 1.46678 2.27294 2.67072 3.17311 3.22226 3.24237 3.24555 3.29211 3.30644 3.91972 4.28104 4.33001 4.37133 4.39224 4.56658 4.67768 4.82044 4.91424 5.03228 5.13293 5.14148 5.16208 5.20468 5.32576 5.40830 5.49581 5.78030 5.80902 5.97119 6.03987 6.11728 6.45473 7.20025 7.24302 7.30844 7.45721 7.51289 7.61555 7.91846 8.49305 8.70730 8.95972 9.39144 10.90467 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.018301 B = 0.002012 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.608179 B =13911.918738 C =15421.077482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.252 3.748 10 N -0.706 5.706 11 C 0.499 3.501 12 O -0.531 6.531 13 C 0.048 3.952 14 O -0.311 6.311 15 C 0.560 3.440 16 O -0.495 6.495 17 C -0.043 4.043 18 C 0.088 3.912 19 N -0.279 5.279 20 N -0.153 5.153 21 C 0.147 3.853 22 C -0.105 4.105 23 C -0.103 4.103 24 C -0.113 4.113 25 C -0.098 4.098 26 C -0.105 4.105 27 N -0.163 5.163 28 H 0.267 0.733 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.393 0.607 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.224 0.776 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.139 0.861 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.137 -28.251 0.016 28.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.132 3.868 10 N -0.357 5.357 11 C 0.282 3.718 12 O -0.408 6.408 13 C -0.029 4.029 14 O -0.224 6.224 15 C 0.400 3.600 16 O -0.381 6.381 17 C -0.207 4.207 18 C -0.103 4.103 19 N -0.105 5.105 20 N -0.047 5.047 21 C 0.057 3.943 22 C -0.126 4.126 23 C -0.122 4.122 24 C -0.132 4.132 25 C -0.117 4.117 26 C -0.125 4.125 27 N -0.009 5.009 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.226 0.774 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.240 0.760 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.150 0.850 38 H 0.157 0.843 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.672 -28.785 0.014 28.834 hybrid contribution 1.968 1.553 -0.003 2.507 sum 0.296 -27.232 0.011 27.234 Atomic orbital electron populations 1.69963 1.06116 1.27524 1.48576 1.24954 0.94943 0.99493 0.94615 0.86444 0.79385 0.82170 0.78720 1.20036 1.21057 1.20030 1.21171 0.93310 0.90304 1.53640 0.91786 1.19173 0.88152 0.81482 0.98043 1.46352 1.11531 1.05269 1.72504 1.19840 0.89104 0.83945 0.78914 1.90727 1.16259 1.84477 1.49337 1.22987 0.94496 0.80465 1.04964 1.86684 1.39337 1.13580 1.82819 1.19268 0.84628 0.83046 0.73015 1.90889 1.13594 1.87354 1.46277 1.21759 0.88686 0.93875 1.16347 1.25177 1.01293 0.87797 0.96046 1.78056 0.89171 1.21410 1.21869 1.48384 1.05793 1.00149 1.50355 1.17426 0.78597 0.92328 1.05957 1.20931 0.99501 0.91600 1.00519 1.21069 0.91170 1.00541 0.99419 1.21396 0.99188 0.93831 0.98743 1.21139 0.96837 0.95081 0.98634 1.21144 0.90437 1.01405 0.99562 1.74057 1.17697 0.99798 1.09309 0.92315 0.95251 0.95238 0.77400 0.88074 0.88081 0.75982 0.84075 0.84576 0.84957 0.84280 0.83544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.79 13.29 55.43 0.74 -25.06 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.91 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 7 C -0.55 -14.56 9.28 -34.44 -0.32 -14.88 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.25 6.56 5.43 -5.20 -0.03 6.53 16 10 N -0.71 -14.47 5.55 -61.47 -0.34 -14.81 16 11 C 0.50 9.98 7.91 -10.98 -0.09 9.89 16 12 O -0.53 -13.07 16.50 -14.11 -0.23 -13.30 16 13 C 0.05 0.73 5.95 36.01 0.21 0.94 16 14 O -0.31 -5.12 9.76 -47.25 -0.46 -5.58 16 15 C 0.56 7.97 7.97 34.56 0.28 8.24 16 16 O -0.50 -7.09 16.69 -19.25 -0.32 -7.41 16 17 C -0.04 -0.56 7.12 -83.01 -0.59 -1.15 16 18 C 0.09 0.89 11.91 -16.90 -0.20 0.69 16 19 N -0.28 -3.10 11.90 30.85 0.37 -2.74 16 20 N -0.15 -1.90 4.44 32.48 0.14 -1.75 16 21 C 0.15 1.54 6.74 -83.60 -0.56 0.98 16 22 C -0.10 -0.84 9.65 -39.39 -0.38 -1.22 16 23 C -0.10 -0.61 10.04 -39.61 -0.40 -1.01 16 24 C -0.11 -0.64 10.04 -39.55 -0.40 -1.04 16 25 C -0.10 -0.69 10.04 -39.61 -0.40 -1.09 16 26 C -0.10 -1.01 9.61 -39.40 -0.38 -1.39 16 27 N -0.16 -2.28 11.30 33.28 0.38 -1.91 16 28 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.03 0.85 8.14 -51.92 -0.42 0.43 16 31 H 0.39 6.69 8.32 -40.82 -0.34 6.35 16 32 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.22 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.14 1.04 7.67 -52.49 -0.40 0.63 16 36 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 37 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 38 H 0.14 0.71 8.06 -52.48 -0.42 0.28 16 39 H 0.15 1.55 7.67 -52.49 -0.40 1.15 16 LS Contribution 361.78 15.07 5.45 5.45 Total: -1.00 -35.08 361.78 -6.71 -41.79 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -4.06 Total: 2.57 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: -3.35 Total: 7.15 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 1.28 Total: -46.27 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -1.02 Total: -26.29 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.08 -6.71 -41.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023075557.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.726 kcal (2) G-P(sol) polarization free energy of solvation -35.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds