Wall clock time and date at job start Tue Mar 31 2020 05:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41383 * 126.80378 * 2 1 4 4 C 1.35440 * 103.98942 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.77991 * 179.97438 * 4 3 2 6 6 O 1.45200 * 109.47505 * 89.99891 * 5 4 3 7 7 C 1.34747 * 117.00252 * 180.02562 * 6 5 4 8 8 O 1.21502 * 120.00298 * 359.97438 * 7 6 5 9 9 C 1.47470 * 120.00053 * 180.02562 * 7 6 5 10 10 C 1.39835 * 120.06287 * 359.71591 * 9 7 6 11 11 C 1.37615 * 119.92878 * 179.80765 * 10 9 7 12 12 C 1.39269 * 120.06627 * 0.45189 * 11 10 9 13 13 N 1.39073 * 119.93311 * 179.75949 * 12 11 10 14 14 C 1.34774 * 119.99755 * 213.66554 * 13 12 11 15 15 O 1.21730 * 120.00628 * 5.28342 * 14 13 12 16 16 C 1.46204 * 119.99898 * 185.27955 * 14 13 12 17 17 H 1.08001 * 119.99508 * 359.97438 * 16 14 13 18 18 C 1.40121 * 120.00222 * 180.02562 * 16 14 13 19 19 N 1.30631 * 119.99995 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 119.99995 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47472 * 59.99669 * 20 18 16 22 22 H 1.48497 * 109.47176 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47154 * 299.99490 * 20 18 16 24 24 C 1.39282 * 120.13521 * 359.78419 * 12 11 10 25 25 C 1.37602 * 120.06532 * 359.97438 * 24 12 11 26 26 O 1.34043 * 106.44709 * 0.24059 * 4 3 2 27 27 N 1.20924 * 111.56453 * 359.56238 * 26 4 3 28 28 H 1.08999 * 109.46787 * 90.00297 * 1 2 3 29 29 H 1.09000 * 109.47381 * 209.99602 * 1 2 3 30 30 H 1.08995 * 109.47385 * 330.00191 * 1 2 3 31 31 H 1.08000 * 128.00293 * 0.03422 * 3 2 1 32 32 H 1.09005 * 109.47004 * 329.99740 * 5 4 3 33 33 H 1.08996 * 109.47455 * 210.00150 * 5 4 3 34 34 H 1.07999 * 120.04116 * 0.03523 * 10 9 7 35 35 H 1.07990 * 119.96685 * 180.20881 * 11 10 9 36 36 H 0.96993 * 120.00191 * 33.66585 * 13 12 11 37 37 H 0.97000 * 120.00207 * 180.02562 * 19 18 16 38 38 H 1.07997 * 119.96644 * 179.97438 * 24 12 11 39 39 H 1.08000 * 120.03175 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6024 0.6069 -0.0006 5 6 4.9021 1.3696 -0.0014 6 8 5.3203 1.6148 1.3673 7 6 6.4723 2.2914 1.5431 8 8 7.1102 2.6659 0.5791 9 6 6.9595 2.5765 2.9055 10 6 6.2240 2.1504 4.0159 11 6 6.6831 2.4145 5.2860 12 6 7.8742 3.1134 5.4661 13 7 8.3331 3.3831 6.7509 14 6 9.0021 4.5260 7.0015 15 8 9.1214 5.3655 6.1281 16 6 9.5846 4.7575 8.3223 17 1 9.4784 4.0128 9.0973 18 6 10.2797 5.9459 8.5830 19 7 10.4077 6.8467 7.6457 20 14 11.0245 6.2413 10.2704 21 1 12.0134 5.1744 10.5687 22 1 11.7021 7.5626 10.2880 23 1 9.9506 6.2216 11.2959 24 6 8.6065 3.5434 4.3620 25 6 8.1550 3.2780 3.0896 26 8 3.4537 -0.7253 -0.0063 27 7 2.2868 -1.0423 -0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 2.0709 2.1743 0.0005 32 1 4.7648 2.3210 -0.5153 33 1 5.6657 0.7859 -0.5155 34 1 5.2984 1.6115 3.8769 35 1 6.1174 2.0828 6.1439 36 1 8.1717 2.7488 7.4667 37 1 10.8892 7.6693 7.8261 38 1 9.5295 4.0855 4.5049 39 1 8.7230 3.6120 2.2339 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025401334.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:33 Heat of formation + Delta-G solvation = -34.415035 kcal Electronic energy + Delta-G solvation = -25897.376259 eV Core-core repulsion = 21773.645951 eV Total energy + Delta-G solvation = -4123.730309 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.29338 -40.51217 -39.21582 -37.16247 -36.46455 -35.16404 -33.72065 -33.08211 -32.60803 -30.62253 -29.73953 -29.07029 -27.59046 -26.46329 -23.66703 -23.39761 -22.48781 -21.04030 -20.60338 -19.95429 -18.20727 -17.95296 -17.79497 -17.41348 -16.81825 -16.47521 -16.25419 -15.62027 -15.10725 -14.56125 -14.33337 -14.16086 -13.92005 -13.76866 -13.46947 -13.39677 -13.31491 -13.16781 -12.80712 -12.73838 -12.50533 -12.09789 -11.95739 -11.62774 -11.40529 -11.16283 -10.89383 -10.85413 -10.72653 -10.56537 -10.46148 -10.37441 -9.87472 -9.55082 -9.02425 -8.67950 -7.93736 -7.36381 -6.47201 -4.95728 0.87000 1.05685 1.79420 1.81198 2.42275 2.74369 2.98898 3.02444 3.07844 3.09610 3.79985 3.88456 3.97627 4.07963 4.37883 4.41922 4.55634 4.64348 4.74621 4.87497 5.04196 5.06604 5.11323 5.22625 5.28791 5.35705 5.37233 5.48563 5.70782 5.71782 5.85533 6.02197 6.17307 6.37588 6.53045 6.77846 6.84555 7.11565 7.18035 7.54632 7.78871 7.83302 7.87237 7.98919 8.72037 9.00437 10.21234 10.42581 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.029096 B = 0.001923 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.098502 B =14560.434229 C =15075.408092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.012 3.988 3 C -0.201 4.201 4 C -0.033 4.033 5 C 0.150 3.850 6 O -0.351 6.351 7 C 0.523 3.477 8 O -0.516 6.516 9 C -0.189 4.189 10 C -0.034 4.034 11 C -0.196 4.196 12 C 0.239 3.761 13 N -0.694 5.694 14 C 0.537 3.463 15 O -0.555 6.555 16 C -0.535 4.535 17 H 0.074 0.926 18 C 0.085 3.915 19 N -0.756 5.756 20 Si 0.915 3.085 21 H -0.266 1.266 22 H -0.278 1.278 23 H -0.266 1.266 24 C -0.147 4.147 25 C -0.026 4.026 26 O 0.110 5.890 27 N -0.357 5.357 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.177 0.823 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.397 0.603 37 H 0.275 0.725 38 H 0.148 0.852 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.313 -10.918 -11.259 21.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.146 4.146 3 C -0.222 4.222 4 C -0.097 4.097 5 C 0.075 3.925 6 O -0.269 6.269 7 C 0.370 3.630 8 O -0.405 6.405 9 C -0.192 4.192 10 C -0.053 4.053 11 C -0.217 4.217 12 C 0.137 3.863 13 N -0.335 5.335 14 C 0.345 3.655 15 O -0.436 6.436 16 C -0.571 4.571 17 H 0.092 0.908 18 C -0.137 4.137 19 N -0.383 5.383 20 Si 0.739 3.261 21 H -0.190 1.190 22 H -0.203 1.203 23 H -0.191 1.191 24 C -0.168 4.168 25 C -0.046 4.046 26 O 0.041 5.959 27 N -0.061 5.061 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.194 0.806 32 H 0.126 0.874 33 H 0.115 0.885 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.231 0.769 37 H 0.086 0.914 38 H 0.166 0.834 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.129 -11.270 -12.136 21.770 hybrid contribution 0.104 0.721 1.098 1.318 sum -14.024 -10.550 -11.038 20.732 Atomic orbital electron populations 1.20187 0.85612 1.04065 1.03485 1.23659 0.99262 0.88642 1.03042 1.22550 0.90909 1.01531 1.07247 1.23864 0.97128 0.83967 1.04735 1.20976 0.89938 0.99037 0.82558 1.86615 1.40674 1.69857 1.29762 1.21278 0.77372 0.73911 0.90439 1.90824 1.56723 1.50520 1.42463 1.18713 1.00171 1.11553 0.88727 1.21029 0.97850 0.95243 0.91170 1.20864 0.96179 1.07262 0.97433 1.18315 0.90305 0.90645 0.87066 1.44332 1.58303 1.23820 1.07023 1.18470 0.78123 0.78768 0.90152 1.90661 1.61282 1.43820 1.47840 1.20840 1.35477 1.04438 0.96326 0.90821 1.25760 0.94558 0.95024 0.98314 1.69956 1.29764 1.05905 1.32686 0.86295 0.79638 0.78259 0.81887 1.19030 1.20304 1.19062 1.21309 1.02149 1.03111 0.90260 1.21044 0.93035 0.92892 0.97584 1.84850 1.21619 1.22441 1.66992 1.73880 0.89255 1.24125 1.18819 0.90049 0.90398 0.89777 0.80605 0.87449 0.88545 0.85247 0.85556 0.76857 0.91445 0.83394 0.85020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.47 36.00 0.38 -0.06 16 2 C 0.01 0.11 7.33 -82.10 -0.60 -0.49 16 3 C -0.20 -1.71 11.06 -39.38 -0.44 -2.15 16 4 C -0.03 -0.33 7.13 -35.31 -0.25 -0.58 16 5 C 0.15 1.43 6.04 36.01 0.22 1.64 16 6 O -0.35 -4.38 9.44 -40.62 -0.38 -4.77 16 7 C 0.52 7.74 7.89 34.49 0.27 8.02 16 8 O -0.52 -8.49 16.13 -19.27 -0.31 -8.80 16 9 C -0.19 -3.00 5.88 -104.94 -0.62 -3.62 16 10 C -0.03 -0.49 9.60 -39.21 -0.38 -0.87 16 11 C -0.20 -3.07 9.94 -39.43 -0.39 -3.46 16 12 C 0.24 4.59 6.27 -83.80 -0.53 4.07 16 13 N -0.69 -14.34 5.30 -11.18 -0.06 -14.40 16 14 C 0.54 14.01 7.46 -13.06 -0.10 13.92 16 15 O -0.55 -16.41 12.69 5.16 0.07 -16.34 16 16 C -0.54 -13.83 9.54 -35.68 -0.34 -14.17 16 17 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 18 C 0.09 2.20 5.50 -17.36 -0.10 2.11 16 19 N -0.76 -21.06 11.82 55.55 0.66 -20.40 16 20 Si 0.92 18.67 29.56 -169.99 -5.02 13.65 16 21 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 22 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 24 C -0.15 -2.94 8.62 -39.43 -0.34 -3.28 16 25 C -0.03 -0.46 9.58 -39.22 -0.38 -0.84 16 26 O 0.11 1.25 11.20 17.17 0.19 1.45 16 27 N -0.36 -4.15 12.07 33.42 0.40 -3.75 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.13 1.58 7.60 -52.49 -0.40 1.18 16 35 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.40 6.86 8.79 -40.82 -0.36 6.50 16 37 H 0.27 6.95 8.29 -40.82 -0.34 6.61 16 38 H 0.15 3.36 6.41 -52.49 -0.34 3.03 16 39 H 0.13 2.17 7.64 -52.49 -0.40 1.77 16 LS Contribution 355.24 15.07 5.35 5.35 Total: -1.00 -33.06 355.24 -6.69 -39.75 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -4.00 Total: 8.03 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -3.58 Total: 0.24 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 1.00 Total: -38.54 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.44 Total: -28.47 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.65 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.06 -6.69 -39.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025401334.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.333 kcal (2) G-P(sol) polarization free energy of solvation -33.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds