Wall clock time and date at job start Tue Mar 31 2020 06:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00295 * 2 1 4 4 H 1.48502 * 109.47047 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47064 * 299.99665 * 3 2 1 6 6 H 1.48506 * 109.47173 * 59.99772 * 3 2 1 7 7 C 1.37883 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00112 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99688 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47191 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00439 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99578 * 0.02562 * 11 10 9 13 13 C 1.50698 * 120.00476 * 179.97438 * 11 10 9 14 14 N 1.46497 * 109.47391 * 180.02562 * 13 11 10 15 15 N 1.28728 * 125.33524 * 269.97982 * 14 13 11 16 16 N 1.28981 * 108.95398 * 179.74546 * 15 14 13 17 17 C 1.34078 * 107.26743 * 0.42709 * 16 15 14 18 18 C 1.48366 * 126.68150 * 179.83463 * 17 16 15 19 19 C 1.39466 * 119.96894 * 179.41200 * 18 17 16 20 20 C 1.37690 * 120.02571 * 179.76527 * 19 18 17 21 21 C 1.39700 * 119.96694 * 0.49066 * 20 19 18 22 22 C 1.47736 * 120.02193 * 179.74035 * 21 20 19 23 23 N 1.34777 * 120.00107 * 0.02562 * 22 21 20 24 24 O 1.21566 * 119.99793 * 180.02562 * 22 21 20 25 25 C 1.39687 * 119.94736 * 359.76923 * 21 20 19 26 26 C 1.37683 * 119.97126 * 359.97438 * 25 21 20 27 27 N 1.28877 * 125.33512 * 89.99731 * 14 13 11 28 28 H 0.97006 * 120.00033 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47284 * 59.99789 * 9 7 2 30 30 H 1.09006 * 109.47199 * 299.99681 * 9 7 2 31 31 H 0.97000 * 119.99862 * 359.97438 * 10 9 7 32 32 H 1.08997 * 109.46948 * 60.00102 * 13 11 10 33 33 H 1.09006 * 109.46982 * 300.00333 * 13 11 10 34 34 H 1.08000 * 119.99029 * 0.03025 * 19 18 17 35 35 H 1.08000 * 120.01374 * 180.25870 * 20 19 18 36 36 H 0.96991 * 120.00395 * 359.97438 * 23 22 21 37 37 H 0.97000 * 119.99533 * 179.97438 * 23 22 21 38 38 H 1.08004 * 120.01444 * 179.97438 * 25 21 20 39 39 H 1.08007 * 119.98266 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2028 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5612 -5.1049 0.0011 13 6 2.7328 -6.0289 0.0005 14 7 2.0003 -7.2976 0.0006 15 7 1.6288 -7.9426 1.0508 16 7 1.0051 -9.0115 0.6871 17 6 0.9989 -9.0320 -0.6535 18 6 0.3970 -10.0742 -1.5211 19 6 0.4618 -9.9483 -2.9086 20 6 -0.0922 -10.9172 -3.7149 21 6 -0.7283 -12.0215 -3.1426 22 6 -1.3281 -13.0589 -4.0066 23 7 -1.2613 -12.9404 -5.3475 24 8 -1.8820 -14.0194 -3.5081 25 6 -0.7973 -12.1436 -1.7528 26 6 -0.2379 -11.1760 -0.9487 27 7 1.6271 -7.9429 -1.0507 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5570 -0.8896 30 1 0.6239 -2.5567 0.8904 31 1 3.1565 -3.4355 0.0002 32 1 3.3601 -5.9710 0.8900 33 1 3.3588 -5.9712 -0.8900 34 1 0.9505 -9.0927 -3.3508 35 1 -0.0382 -10.8216 -4.7893 36 1 -0.8197 -12.1739 -5.7453 37 1 -1.6548 -13.6218 -5.9147 38 1 -1.2892 -12.9966 -1.3091 39 1 -0.2908 -11.2704 0.1259 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031762338.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:06 Heat of formation + Delta-G solvation = 79.661410 kcal Electronic energy + Delta-G solvation = -25723.631269 eV Core-core repulsion = 21669.433189 eV Total energy + Delta-G solvation = -4054.198080 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.123 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.33505 -40.44113 -39.26972 -38.57238 -35.17844 -34.48236 -34.29060 -33.56137 -32.59105 -31.42987 -31.29168 -29.36753 -27.14843 -25.45528 -24.05733 -22.91260 -22.75012 -22.06669 -20.86275 -20.30441 -18.72240 -18.20270 -17.86748 -17.23064 -16.76001 -16.47098 -15.71768 -15.45784 -15.29958 -15.12996 -15.10944 -15.01118 -14.30766 -14.12869 -13.92432 -13.73859 -13.28610 -13.15743 -13.01909 -12.63990 -12.16274 -12.05587 -11.82156 -11.54593 -11.18897 -11.10495 -11.02557 -11.01096 -10.94092 -10.49086 -10.46129 -10.14788 -9.59700 -9.51558 -9.40751 -8.94601 -8.93068 -8.21067 -6.30128 -4.38698 0.11468 0.99616 1.17403 1.70541 1.99254 2.70095 2.79434 3.06344 3.15246 3.22256 3.24987 3.48077 3.53742 3.60605 4.02510 4.22262 4.37407 4.44542 4.57246 4.65846 4.72737 4.92423 4.95954 5.06606 5.14794 5.22209 5.37439 5.62547 5.64288 5.82222 5.91322 6.02430 6.10198 6.31670 6.41431 6.87533 7.03178 7.05594 7.30017 7.44969 7.78701 7.81492 8.23822 8.26100 8.48836 8.74149 9.28220 10.79878 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.022982 B = 0.001892 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.054036 B =14796.316267 C =15485.213879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.548 4.548 8 H 0.066 0.934 9 C 0.250 3.750 10 N -0.697 5.697 11 C 0.488 3.512 12 O -0.535 6.535 13 C 0.104 3.896 14 N -0.113 5.113 15 N -0.043 5.043 16 N -0.271 5.271 17 C 0.194 3.806 18 C 0.027 3.973 19 C -0.090 4.090 20 C -0.087 4.087 21 C -0.131 4.131 22 C 0.565 3.435 23 N -0.851 5.851 24 O -0.539 6.539 25 C -0.059 4.059 26 C -0.087 4.087 27 N -0.282 5.282 28 H 0.267 0.733 29 H 0.031 0.969 30 H 0.031 0.969 31 H 0.395 0.605 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.133 0.867 36 H 0.402 0.598 37 H 0.405 0.595 38 H 0.144 0.856 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.853 -21.442 -8.845 23.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.586 4.586 8 H 0.084 0.916 9 C 0.130 3.870 10 N -0.347 5.347 11 C 0.268 3.732 12 O -0.412 6.412 13 C -0.020 4.020 14 N -0.023 5.023 15 N -0.036 5.036 16 N -0.143 5.143 17 C -0.086 4.086 18 C 0.023 3.977 19 C -0.110 4.110 20 C -0.106 4.106 21 C -0.135 4.135 22 C 0.351 3.649 23 N -0.415 5.415 24 O -0.417 6.417 25 C -0.077 4.077 26 C -0.107 4.107 27 N -0.132 5.132 28 H 0.077 0.923 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.229 0.771 32 H 0.164 0.836 33 H 0.161 0.839 34 H 0.160 0.840 35 H 0.151 0.849 36 H 0.232 0.768 37 H 0.237 0.763 38 H 0.162 0.838 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.724 -21.585 -7.757 23.418 hybrid contribution 0.821 1.230 -0.894 1.728 sum 5.545 -20.355 -8.651 22.802 Atomic orbital electron populations 1.69976 1.06171 1.27484 1.48356 1.24966 0.94943 0.99605 0.94472 0.86318 0.79761 0.82712 0.77866 1.19560 1.20724 1.20703 1.21204 0.93360 0.90131 1.53920 0.91588 1.19242 0.88114 0.81452 0.98188 1.46390 1.11758 1.05181 1.71320 1.20063 0.89164 0.84467 0.79465 1.90795 1.16058 1.84320 1.50069 1.22269 0.94024 0.76820 1.08908 1.49375 1.34719 1.17535 1.00703 1.78936 1.10015 1.00648 1.14003 1.75994 1.15693 1.12323 1.10278 1.23455 1.00956 0.94240 0.89924 1.17487 0.97621 0.91330 0.91237 1.21147 0.98831 0.99302 0.91741 1.21164 0.96628 0.92880 0.99887 1.20007 1.02766 0.96219 0.94511 1.18253 0.78700 0.85406 0.82537 1.43760 1.61687 1.29014 1.07028 1.90832 1.43880 1.32442 1.74496 1.21197 0.96317 0.98524 0.91705 1.21215 0.95981 0.92156 1.01370 1.74843 1.16822 1.06491 1.15078 0.92298 0.95150 0.95096 0.77122 0.83640 0.83863 0.84050 0.84914 0.76820 0.76347 0.83801 0.83719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.05 13.29 55.43 0.74 -24.32 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 19.87 29.54 -169.99 -5.02 14.85 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.55 -13.87 9.28 -34.44 -0.32 -14.19 16 8 H 0.07 1.53 7.60 -52.49 -0.40 1.14 16 9 C 0.25 6.14 5.43 -5.20 -0.03 6.11 16 10 N -0.70 -12.63 5.55 -61.48 -0.34 -12.97 16 11 C 0.49 8.53 7.90 -10.99 -0.09 8.44 16 12 O -0.54 -12.31 16.43 5.55 0.09 -12.22 16 13 C 0.10 1.20 7.08 -5.20 -0.04 1.16 16 14 N -0.11 -1.67 3.48 -11.68 -0.04 -1.71 16 15 N -0.04 -0.70 13.23 60.35 0.80 0.10 16 16 N -0.27 -4.32 12.22 32.15 0.39 -3.92 16 17 C 0.19 2.81 7.93 -156.28 -1.24 1.57 16 18 C 0.03 0.31 5.88 -104.82 -0.62 -0.31 16 19 C -0.09 -0.84 9.68 -39.32 -0.38 -1.22 16 20 C -0.09 -0.63 9.53 -39.24 -0.37 -1.00 16 21 C -0.13 -1.15 5.88 -104.93 -0.62 -1.77 16 22 C 0.56 5.13 8.04 -12.38 -0.10 5.03 16 23 N -0.85 -4.12 8.82 30.50 0.27 -3.85 16 24 O -0.54 -6.99 17.17 5.31 0.09 -6.90 16 25 C -0.06 -0.56 9.58 -39.24 -0.38 -0.93 16 26 C -0.09 -0.89 9.68 -39.33 -0.38 -1.27 16 27 N -0.28 -4.21 11.84 32.16 0.38 -3.82 16 28 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.40 5.60 8.32 -40.82 -0.34 5.26 16 32 H 0.15 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.14 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.14 1.23 7.87 -52.49 -0.41 0.82 16 35 H 0.13 0.47 6.39 -52.49 -0.34 0.14 16 36 H 0.40 0.85 6.85 -40.82 -0.28 0.57 16 37 H 0.41 1.47 8.93 -40.82 -0.36 1.11 16 38 H 0.14 1.28 7.64 -52.48 -0.40 0.88 16 39 H 0.15 1.40 7.87 -52.48 -0.41 0.99 16 LS Contribution 356.56 15.07 5.37 5.37 Total: -1.00 -37.39 356.56 -5.69 -43.08 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -3.77 Total: 3.07 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -4.65 Total: 3.24 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 2.20 Total: -50.50 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: 0.18 Total: -19.12 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -37.39 -5.69 -43.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031762338.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.745 kcal (2) G-P(sol) polarization free energy of solvation -37.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds