Wall clock time and date at job start Tue Mar 31 2020 04:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31490 * 1 3 3 Si 1.86796 * 120.00068 * 2 1 4 4 H 1.48500 * 109.47401 * 270.00350 * 3 2 1 5 5 H 1.48503 * 109.47165 * 30.00063 * 3 2 1 6 6 H 1.48502 * 109.47084 * 149.99958 * 3 2 1 7 7 C 1.38748 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00012 * 179.97438 * 7 2 1 9 9 O 1.34773 * 120.00289 * 359.97438 * 7 2 1 10 10 C 1.35558 * 117.00367 * 185.05754 * 9 7 2 11 11 C 1.39163 * 119.92349 * 354.44953 * 10 9 7 12 12 C 1.37632 * 120.07834 * 180.02562 * 11 10 9 13 13 C 1.39800 * 119.92290 * 359.97438 * 12 11 10 14 14 C 1.47669 * 120.07598 * 180.02562 * 13 12 11 15 15 O 1.21780 * 120.00110 * 0.02562 * 14 13 12 16 16 C 1.46175 * 119.99747 * 180.02562 * 14 13 12 17 17 C 1.35148 * 119.99773 * 179.97438 * 16 14 13 18 18 C 1.46978 * 119.99895 * 179.97438 * 17 16 14 19 19 C 1.39951 * 120.18749 * 0.02562 * 18 17 16 20 20 C 1.37992 * 119.82167 * 179.72757 * 19 18 17 21 21 F 1.35103 * 119.89661 * 180.27723 * 20 19 18 22 22 C 1.38702 * 120.19940 * 0.25195 * 20 19 18 23 23 C 1.38263 * 120.37333 * 359.97438 * 22 20 19 24 24 C 1.38209 * 120.17366 * 0.02562 * 23 22 20 25 25 F 1.35102 * 120.10191 * 179.97438 * 24 23 22 26 26 C 1.39805 * 119.84824 * 0.28009 * 13 12 11 27 27 C 1.37643 * 119.91983 * 359.45979 * 26 13 12 28 28 H 0.97001 * 119.99757 * 359.97438 * 1 2 3 29 29 H 1.08006 * 119.96028 * 359.97438 * 11 10 9 30 30 H 1.08003 * 120.03480 * 179.97438 * 12 11 10 31 31 H 1.07992 * 120.00157 * 0.02562 * 16 14 13 32 32 H 1.08001 * 119.99808 * 0.02562 * 17 16 14 33 33 H 1.08002 * 120.08254 * 0.02562 * 19 18 17 34 34 H 1.08000 * 119.82050 * 180.02562 * 22 20 19 35 35 H 1.07992 * 119.91517 * 180.02562 * 23 22 20 36 36 H 1.08005 * 120.03990 * 179.70465 * 26 13 12 37 37 H 1.07999 * 119.96060 * 180.25159 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3149 0.0000 0.0000 3 14 2.2489 1.6177 0.0000 4 1 2.4964 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5465 1.4401 0.7001 7 6 2.0086 -1.2016 -0.0005 8 1 3.0886 -1.2016 -0.0010 9 8 1.3348 -2.3688 -0.0005 10 6 2.0690 -3.5034 0.1054 11 6 3.4589 -3.4347 0.0912 12 6 4.2075 -4.5847 0.1981 13 6 3.5701 -5.8228 0.3214 14 6 4.3700 -7.0587 0.4368 15 8 5.5863 -7.0001 0.4251 16 6 3.7017 -8.3524 0.5652 17 6 4.4337 -9.4836 0.6703 18 6 3.7618 -10.7843 0.7999 19 6 2.3642 -10.8561 0.8144 20 6 1.7412 -12.0819 0.9307 21 9 0.3921 -12.1535 0.9392 22 6 2.4959 -13.2406 1.0385 23 6 3.8771 -13.1787 1.0298 24 6 4.5171 -11.9592 0.9139 25 9 5.8668 -11.9004 0.9061 26 6 2.1736 -5.8886 0.3299 27 6 1.4312 -4.7341 0.2281 28 1 -0.4850 0.8401 0.0004 29 1 3.9507 -2.4779 -0.0045 30 1 5.2861 -4.5306 0.1866 31 1 2.6231 -8.4043 0.5752 32 1 5.5124 -9.4316 0.6598 33 1 1.7750 -9.9550 0.7298 34 1 2.0019 -14.1968 1.1288 35 1 4.4574 -14.0856 1.1137 36 1 1.6779 -6.8440 0.4203 37 1 0.3524 -4.7838 0.2387 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040139701.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:16 Heat of formation + Delta-G solvation = -86.402749 kcal Electronic energy + Delta-G solvation = -25188.790802 eV Core-core repulsion = 20919.425871 eV Total energy + Delta-G solvation = -4269.364932 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.085 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.32616 -49.31615 -39.73797 -39.24054 -38.53547 -36.28360 -34.45737 -32.57831 -30.91465 -30.57264 -30.15568 -29.17589 -25.79718 -25.18905 -23.51518 -22.57338 -22.07385 -20.77792 -19.17848 -18.34349 -18.16499 -17.75973 -17.33775 -17.14703 -16.27148 -16.03301 -15.72682 -15.29703 -14.81731 -14.79946 -14.66463 -14.35702 -14.24359 -14.19040 -13.74973 -13.74283 -13.52302 -13.02562 -12.91124 -12.76469 -12.60650 -11.97753 -11.88262 -11.69138 -11.54216 -11.42332 -10.97560 -10.78262 -10.74048 -10.57788 -9.58895 -9.41519 -9.29932 -9.05996 -8.63581 -8.41714 -7.46740 -6.70761 -4.25719 -0.08860 0.51468 1.19017 1.94822 2.12034 2.94088 3.01936 3.02881 3.07807 3.44022 3.62299 3.67734 3.78646 3.98930 4.07875 4.36687 4.47858 4.57251 4.73762 4.86283 4.90716 5.03638 5.18528 5.34941 5.43471 5.44832 5.52211 5.56229 5.57535 5.66324 5.99160 6.04730 6.16021 6.26518 6.30146 6.43681 6.70295 6.85546 6.93982 7.17318 7.20839 7.57965 7.74991 7.95899 8.73898 9.39393 10.45439 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.023092 B = 0.002083 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.225850 B =13441.878620 C =14636.296496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.043 3.957 3 Si 0.946 3.054 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.393 4.393 8 H 0.099 0.901 9 O -0.157 6.157 10 C 0.175 3.825 11 C -0.249 4.249 12 C -0.007 4.007 13 C -0.271 4.271 14 C 0.426 3.574 15 O -0.484 6.484 16 C -0.187 4.187 17 C -0.058 4.058 18 C -0.064 4.064 19 C -0.116 4.116 20 C 0.093 3.907 21 F -0.132 7.132 22 C -0.122 4.122 23 C -0.124 4.124 24 C 0.105 3.895 25 F -0.127 7.127 26 C -0.028 4.028 27 C -0.204 4.204 28 H 0.275 0.725 29 H 0.133 0.867 30 H 0.119 0.881 31 H 0.134 0.866 32 H 0.142 0.858 33 H 0.153 0.847 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.119 0.881 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.247 -22.645 1.910 23.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.164 4.164 3 Si 0.770 3.230 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.469 4.469 8 H 0.116 0.884 9 O -0.057 6.057 10 C 0.118 3.882 11 C -0.268 4.268 12 C -0.025 4.025 13 C -0.273 4.273 14 C 0.312 3.688 15 O -0.366 6.366 16 C -0.205 4.205 17 C -0.076 4.076 18 C -0.065 4.065 19 C -0.134 4.134 20 C 0.074 3.926 21 F -0.111 7.111 22 C -0.141 4.141 23 C -0.143 4.143 24 C 0.085 3.915 25 F -0.105 7.105 26 C -0.047 4.047 27 C -0.223 4.223 28 H 0.085 0.915 29 H 0.150 0.850 30 H 0.137 0.863 31 H 0.151 0.849 32 H 0.160 0.840 33 H 0.171 0.829 34 H 0.165 0.835 35 H 0.167 0.833 36 H 0.136 0.864 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.383 -22.354 1.882 22.858 hybrid contribution 0.248 0.790 -0.014 0.828 sum 4.631 -21.565 1.868 22.135 Atomic orbital electron populations 1.70004 1.06190 1.28437 1.43454 1.25429 0.95925 0.99240 0.95836 0.85627 0.79052 0.79343 0.79024 1.19551 1.19983 1.18854 1.21528 0.92220 0.80462 1.52668 0.88364 1.83891 1.35119 1.11889 1.74850 1.19645 0.90347 0.87854 0.90370 1.21123 0.93578 0.99159 1.12981 1.20905 0.99185 0.90955 0.91477 1.19626 0.93764 0.93744 1.20145 1.20175 0.88064 0.88275 0.72322 1.90599 1.16037 1.89452 1.40497 1.23803 1.01291 0.93857 1.01564 1.22265 1.00813 0.89633 0.94878 1.18888 0.92473 0.92860 1.02297 1.21362 0.93610 0.97831 1.00634 1.17525 0.77451 0.94176 1.03461 1.91552 1.28529 1.97117 1.93874 1.21113 0.93339 0.98307 1.01307 1.20935 0.94382 0.97066 1.01942 1.17850 0.77279 0.93682 1.02649 1.91538 1.28327 1.97108 1.93551 1.20820 0.92350 0.96991 0.94520 1.20154 0.99842 0.90066 1.12273 0.91470 0.84959 0.86284 0.84867 0.84046 0.82947 0.83501 0.83337 0.86357 0.85875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.43 13.67 55.48 0.76 -22.67 16 2 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 3 Si 0.95 19.35 29.55 -169.99 -5.02 14.32 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.39 -10.35 9.48 30.92 0.29 -10.05 16 8 H 0.10 2.38 5.18 -52.49 -0.27 2.11 16 9 O -0.16 -4.21 9.74 0.80 0.01 -4.20 16 10 C 0.18 3.99 6.66 -38.90 -0.26 3.73 16 11 C -0.25 -5.24 9.15 -39.46 -0.36 -5.60 16 12 C -0.01 -0.13 9.58 -39.22 -0.38 -0.50 16 13 C -0.27 -4.78 5.88 -104.88 -0.62 -5.40 16 14 C 0.43 6.91 7.06 -32.55 -0.23 6.68 16 15 O -0.48 -9.00 16.23 5.12 0.08 -8.92 16 16 C -0.19 -2.30 8.90 -37.50 -0.33 -2.64 16 17 C -0.06 -0.66 9.26 -37.14 -0.34 -1.01 16 18 C -0.06 -0.62 5.87 -105.00 -0.62 -1.24 16 19 C -0.12 -1.00 9.39 -39.03 -0.37 -1.37 16 20 C 0.09 0.76 7.29 -39.50 -0.29 0.48 16 21 F -0.13 -1.21 17.26 2.25 0.04 -1.17 16 22 C -0.12 -0.78 10.02 -39.40 -0.39 -1.17 16 23 C -0.12 -0.82 10.01 -39.58 -0.40 -1.22 16 24 C 0.10 0.95 7.30 -38.88 -0.28 0.66 16 25 F -0.13 -1.29 16.62 2.25 0.04 -1.25 16 26 C -0.03 -0.46 9.44 -39.21 -0.37 -0.83 16 27 C -0.20 -3.97 9.97 -39.46 -0.39 -4.36 16 28 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.13 2.75 5.62 -52.48 -0.29 2.45 16 30 H 0.12 2.13 7.64 -52.48 -0.40 1.73 16 31 H 0.13 1.31 4.33 -52.49 -0.23 1.08 16 32 H 0.14 1.74 7.20 -52.49 -0.38 1.37 16 33 H 0.15 1.14 6.17 -52.49 -0.32 0.82 16 34 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 35 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 36 H 0.12 1.47 6.21 -52.48 -0.33 1.14 16 37 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 339.98 15.07 5.12 5.12 Total: -1.00 -30.02 339.98 -7.03 -37.06 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -2.63 Total: 4.54 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -5.43 Total: -22.85 kcal Atomic # 7 Polarization: -23.43 SS G_CDS: 0.76 Total: -22.67 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.09 Total: -13.12 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.08 Total: -2.41 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.32 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.02 -7.03 -37.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040139701.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.347 kcal (2) G-P(sol) polarization free energy of solvation -30.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds