Wall clock time and date at job start Tue Mar 31 2020 04:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86796 * 120.00406 * 2 1 4 4 H 1.48511 * 109.47236 * 240.00006 * 3 2 1 5 5 H 1.48500 * 109.47205 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47414 * 120.00095 * 3 2 1 7 7 C 1.38801 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99828 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00153 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00061 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.46982 * 180.02562 * 10 9 7 12 12 O 1.20820 * 120.00318 * 359.97438 * 11 10 9 13 13 O 1.34230 * 119.99833 * 180.02562 * 11 10 9 14 14 C 1.45194 * 117.00286 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47660 * 179.97438 * 14 13 11 16 16 O 1.21236 * 119.99849 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00458 * 179.97438 * 15 14 13 18 18 C 1.34774 * 120.00312 * 179.97438 * 17 15 14 19 19 O 1.21537 * 119.99798 * 0.02562 * 18 17 15 20 20 N 1.34773 * 119.99940 * 180.02562 * 18 17 15 21 21 C 1.46506 * 119.99969 * 180.02562 * 20 18 17 22 22 C 1.54268 * 110.02813 * 272.63206 * 21 20 18 23 23 C 1.54971 * 104.15564 * 217.13629 * 22 21 20 24 24 C 1.54883 * 102.77798 * 37.88503 * 23 22 21 25 25 C 1.53871 * 110.03427 * 155.40981 * 21 20 18 26 26 H 0.97005 * 119.99462 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47185 * 60.00202 * 10 9 7 28 28 H 1.09001 * 109.47230 * 299.99951 * 10 9 7 29 29 H 1.08999 * 109.47220 * 59.98990 * 14 13 11 30 30 H 1.09006 * 109.47077 * 299.99591 * 14 13 11 31 31 H 0.97004 * 119.99647 * 0.02562 * 17 15 14 32 32 H 0.97005 * 120.00161 * 359.72198 * 20 18 17 33 33 H 1.08996 * 110.01294 * 34.01804 * 21 20 18 34 34 H 1.09004 * 110.48773 * 335.77712 * 22 21 20 35 35 H 1.08996 * 110.48996 * 98.42933 * 22 21 20 36 36 H 1.09002 * 110.71525 * 279.57326 * 23 22 21 37 37 H 1.08996 * 110.92520 * 156.29778 * 23 22 21 38 38 H 1.09002 * 110.48973 * 203.40432 * 24 23 22 39 39 H 1.08998 * 110.59905 * 80.81890 * 24 23 22 40 40 H 1.08993 * 110.03486 * 238.56624 * 25 21 20 41 41 H 1.09000 * 110.02921 * 0.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1042 1.6963 -1.2126 5 1 1.2855 2.7464 -0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 16 1.1291 -2.7280 0.0005 10 6 2.5156 -3.8915 0.0005 11 6 1.9870 -5.3028 -0.0001 12 8 0.7952 -5.5016 0.0000 13 8 2.8402 -6.3390 0.0003 14 6 2.2606 -7.6702 0.0002 15 6 3.3626 -8.6981 0.0001 16 8 4.5220 -8.3437 -0.0004 17 7 3.0594 -10.0113 0.0005 18 6 4.0450 -10.9306 -0.0001 19 8 5.2073 -10.5753 -0.0006 20 7 3.7417 -12.2437 -0.0002 21 6 4.8131 -13.2430 -0.0003 22 6 5.2448 -13.5545 -1.4482 23 6 5.5430 -15.0752 -1.4359 24 6 4.4402 -15.6330 -0.5023 25 6 4.3021 -14.5638 0.6011 26 1 -0.4849 0.8401 -0.0004 27 1 3.1242 -3.7315 0.8905 28 1 3.1242 -3.7315 -0.8894 29 1 1.6446 -7.7983 -0.8899 30 1 1.6441 -7.7982 0.8901 31 1 2.1317 -10.2949 0.0006 32 1 2.8140 -12.5273 0.0043 33 1 5.6649 -12.8766 0.5726 34 1 4.4363 -13.3302 -2.1441 35 1 6.1409 -12.9914 -1.7087 36 1 6.5331 -15.2707 -1.0239 37 1 5.4523 -15.4978 -2.4365 38 1 4.7495 -16.5861 -0.0734 39 1 3.5008 -15.7462 -1.0435 40 1 4.9064 -14.8391 1.4654 41 1 3.2568 -14.4615 0.8927 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046026286.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:55 Heat of formation + Delta-G solvation = -152.153747 kcal Electronic energy + Delta-G solvation = -24465.090838 eV Core-core repulsion = 20471.698947 eV Total energy + Delta-G solvation = -3993.391891 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.54690 -40.24165 -39.26129 -37.78903 -36.14643 -34.97080 -33.91822 -32.49348 -30.46455 -29.27239 -28.85993 -27.79051 -25.55696 -23.28419 -21.28042 -21.10780 -20.96189 -20.68438 -19.41583 -18.14188 -17.38788 -17.19180 -16.97310 -16.55926 -16.07300 -15.86019 -15.73433 -15.01415 -14.84789 -14.70459 -14.29291 -14.14051 -13.96404 -13.90320 -13.30891 -12.69829 -12.60231 -12.53563 -12.13543 -12.06141 -11.71355 -11.58543 -11.35585 -11.16085 -11.14306 -11.10962 -11.05765 -10.83787 -10.77617 -10.45498 -10.21730 -9.96458 -9.86326 -9.55136 -9.11202 -8.40018 -6.62474 -6.28250 -4.01284 1.66566 1.75411 2.51449 2.60577 2.91694 3.21686 3.22841 3.27217 3.38817 3.60635 3.98848 4.08971 4.14060 4.15648 4.34722 4.80627 4.81155 4.85230 4.90270 4.96287 4.99975 5.06136 5.07974 5.11342 5.23987 5.38632 5.45359 5.50109 5.54434 5.68468 5.74103 5.76157 5.80305 5.98596 6.07859 6.10186 6.44949 7.09085 7.55201 7.68170 7.99305 8.01483 8.29887 9.17567 10.79212 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.049636 B = 0.001617 C = 0.001585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.971710 B =17309.947755 C =17657.179051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.075 3.925 3 Si 0.922 3.078 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.077 0.923 9 S -0.057 6.057 10 C -0.128 4.128 11 C 0.484 3.516 12 O -0.486 6.486 13 O -0.337 6.337 14 C 0.051 3.949 15 C 0.518 3.482 16 O -0.439 6.439 17 N -0.690 5.690 18 C 0.695 3.305 19 O -0.527 6.527 20 N -0.732 5.732 21 C 0.155 3.845 22 C -0.137 4.137 23 C -0.125 4.125 24 C -0.124 4.124 25 C -0.131 4.131 26 H 0.270 0.730 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.411 0.589 32 H 0.398 0.602 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.676 -32.539 -0.551 32.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.134 4.134 3 Si 0.748 3.252 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.685 4.685 8 H 0.095 0.905 9 S 0.170 5.830 10 C -0.276 4.276 11 C 0.325 3.675 12 O -0.372 6.372 13 O -0.254 6.254 14 C -0.027 4.027 15 C 0.302 3.698 16 O -0.304 6.304 17 N -0.358 5.358 18 C 0.395 3.605 19 O -0.397 6.397 20 N -0.390 5.390 21 C 0.050 3.950 22 C -0.176 4.176 23 C -0.163 4.163 24 C -0.162 4.162 25 C -0.169 4.169 26 H 0.080 0.920 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.246 0.754 32 H 0.233 0.767 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.873 -32.104 -0.540 32.476 hybrid contribution 0.641 0.812 -0.004 1.035 sum 5.514 -31.292 -0.544 31.778 Atomic orbital electron populations 1.69998 1.05989 1.27770 1.46545 1.24994 0.95068 0.99104 0.94247 0.86168 0.79201 0.80860 0.78976 1.19811 1.20775 1.19804 1.22815 0.95079 0.91078 1.59544 0.90514 1.85350 1.04169 0.96591 1.96938 1.23330 1.07173 0.90128 1.06946 1.23474 0.85051 0.86875 0.72074 1.90673 1.16739 1.85422 1.44337 1.86613 1.40412 1.13361 1.85011 1.22514 0.93583 0.80899 1.05736 1.20361 0.90854 0.81791 0.76781 1.90895 1.20262 1.79258 1.40032 1.43987 1.11424 1.06910 1.73468 1.16083 0.84973 0.81076 0.78326 1.91091 1.17099 1.79414 1.52134 1.45472 1.10277 1.03762 1.79461 1.21628 0.89721 0.86720 0.96920 1.22842 1.02176 0.96244 0.96332 1.22496 0.98970 0.94916 0.99908 1.22361 0.99286 0.98071 0.96493 1.22448 1.01918 0.93669 0.98891 0.92008 0.87538 0.87548 0.87457 0.87445 0.75377 0.76734 0.88738 0.91057 0.90781 0.91143 0.91213 0.91281 0.91400 0.90421 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.58 13.22 55.49 0.73 -24.85 16 2 C 0.08 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.19 29.55 -169.99 -5.02 16.16 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -15.04 9.50 30.94 0.29 -14.75 16 8 H 0.08 2.04 7.80 -52.48 -0.41 1.63 16 9 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 10 C -0.13 -2.61 6.27 36.01 0.23 -2.38 16 11 C 0.48 8.99 7.98 36.01 0.29 9.28 16 12 O -0.49 -9.86 15.61 -18.75 -0.29 -10.16 16 13 O -0.34 -5.47 9.75 -45.91 -0.45 -5.91 16 14 C 0.05 0.57 5.94 36.00 0.21 0.79 16 15 C 0.52 6.37 7.85 -10.99 -0.09 6.29 16 16 O -0.44 -7.93 14.90 -25.37 -0.38 -8.31 16 17 N -0.69 -5.56 5.24 -15.78 -0.08 -5.65 16 18 C 0.70 7.21 8.50 -86.92 -0.74 6.47 16 19 O -0.53 -8.44 14.40 -18.47 -0.27 -8.71 16 20 N -0.73 -4.35 5.05 -57.59 -0.29 -4.64 16 21 C 0.15 0.96 3.24 -66.81 -0.22 0.74 16 22 C -0.14 -0.85 6.54 -25.03 -0.16 -1.02 16 23 C -0.12 -0.55 6.91 -24.70 -0.17 -0.72 16 24 C -0.12 -0.41 6.83 -25.07 -0.17 -0.58 16 25 C -0.13 -0.48 6.57 -25.61 -0.17 -0.64 16 26 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.11 2.04 8.14 -51.92 -0.42 1.61 16 28 H 0.11 2.03 8.14 -51.92 -0.42 1.61 16 29 H 0.11 0.96 8.13 -51.93 -0.42 0.54 16 30 H 0.11 0.96 8.13 -51.93 -0.42 0.54 16 31 H 0.41 1.19 8.71 -40.82 -0.36 0.83 16 32 H 0.40 0.94 8.32 -40.82 -0.34 0.60 16 33 H 0.09 0.79 7.58 -51.93 -0.39 0.40 16 34 H 0.07 0.44 8.05 -51.93 -0.42 0.02 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 38 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.07 0.18 7.61 -51.93 -0.40 -0.21 16 LS Contribution 369.03 15.07 5.56 5.56 Total: -1.00 -39.03 369.03 -9.16 -48.19 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -5.67 Total: -3.48 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -0.79 Total: 5.49 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.36 Total: -35.14 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -1.38 Total: -33.09 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -39.03 -9.16 -48.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046026286.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.959 kcal (2) G-P(sol) polarization free energy of solvation -39.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds