Wall clock time and date at job start Tue Mar 31 2020 06:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86798 * 119.99935 * 2 1 4 4 H 1.48504 * 109.47221 * 270.00365 * 3 2 1 5 5 H 1.48503 * 109.47224 * 29.99772 * 3 2 1 6 6 H 1.48496 * 109.47268 * 150.00461 * 3 2 1 7 7 C 1.38654 * 120.00326 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00041 * 179.97438 * 7 2 1 9 9 O 1.34832 * 119.99488 * 359.97438 * 7 2 1 10 10 C 1.35754 * 116.99540 * 174.96745 * 9 7 2 11 11 C 1.38944 * 120.03625 * 5.36149 * 10 9 7 12 12 C 1.38123 * 120.07326 * 180.02562 * 11 10 9 13 13 C 1.38204 * 120.13579 * 359.70117 * 12 11 10 14 14 C 1.38923 * 120.06663 * 0.55189 * 13 12 11 15 15 N 1.39939 * 120.03589 * 179.74440 * 14 13 12 16 16 C 1.34778 * 120.00299 * 214.85085 * 15 14 13 17 17 O 1.21590 * 119.99342 * 355.49764 * 16 15 14 18 18 N 1.34775 * 120.00357 * 175.49257 * 16 15 14 19 19 C 1.46493 * 119.99818 * 180.02562 * 18 16 15 20 20 C 1.50707 * 109.47001 * 180.02562 * 19 18 16 21 21 C 1.38242 * 119.97134 * 269.72658 * 20 19 18 22 22 C 1.38204 * 120.02462 * 179.71925 * 21 20 19 23 23 C 1.38460 * 119.97153 * 0.57798 * 22 21 20 24 24 F 1.35096 * 120.02550 * 179.67518 * 23 22 21 25 25 C 1.38462 * 119.94566 * 359.69901 * 23 22 21 26 26 C 1.38193 * 119.98058 * 359.97438 * 25 23 22 27 27 C 1.38734 * 120.03199 * 185.34169 * 10 9 7 28 28 H 0.96997 * 120.00294 * 0.02562 * 1 2 3 29 29 H 1.07998 * 119.96667 * 359.97438 * 11 10 9 30 30 H 1.08000 * 119.93508 * 180.02562 * 12 11 10 31 31 H 1.08001 * 119.97274 * 180.27829 * 13 12 11 32 32 H 0.97001 * 119.99913 * 34.85149 * 15 14 13 33 33 H 0.96998 * 119.99978 * 0.02562 * 18 16 15 34 34 H 1.09001 * 109.47630 * 60.00604 * 19 18 16 35 35 H 1.08999 * 109.47720 * 299.99836 * 19 18 16 36 36 H 1.08000 * 119.99091 * 359.97438 * 21 20 19 37 37 H 1.07997 * 120.01267 * 180.24891 * 22 21 20 38 38 H 1.08009 * 120.00991 * 179.97438 * 25 23 22 39 39 H 1.07997 * 119.99426 * 180.02562 * 26 25 23 40 40 H 1.07998 * 120.06931 * 0.04238 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.6999 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0701 -3.5045 -0.1072 11 6 3.4579 -3.4382 -0.0978 12 6 4.2068 -4.5936 -0.2068 13 6 3.5787 -5.8196 -0.3193 14 6 2.1915 -5.8921 -0.3346 15 7 1.5562 -7.1333 -0.4539 16 6 0.4010 -7.2358 -1.1404 17 8 -0.1319 -6.2379 -1.5862 18 7 -0.1636 -8.4444 -1.3329 19 6 -1.4190 -8.5558 -2.0796 20 6 -1.8341 -10.0029 -2.1513 21 6 -1.4119 -10.7910 -3.2057 22 6 -1.7871 -12.1196 -3.2695 23 6 -2.5960 -12.6581 -2.2832 24 9 -2.9688 -13.9549 -2.3480 25 6 -3.0229 -11.8661 -1.2307 26 6 -2.6409 -10.5396 -1.1654 27 6 1.4365 -4.7331 -0.2253 28 1 -0.4850 0.8400 -0.0004 29 1 3.9516 -2.4821 -0.0060 30 1 5.2854 -4.5395 -0.1988 31 1 4.1669 -6.7218 -0.3998 32 1 1.9474 -7.9198 -0.0425 33 1 0.2614 -9.2404 -0.9770 34 1 -1.2776 -8.1677 -3.0883 35 1 -2.1947 -7.9804 -1.5744 36 1 -0.7852 -10.3694 -3.9777 37 1 -1.4539 -12.7361 -4.0912 38 1 -3.6543 -12.2850 -0.4609 39 1 -2.9734 -9.9218 -0.3443 40 1 0.3580 -4.7872 -0.2332 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048516921.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:38 Heat of formation + Delta-G solvation = -40.234163 kcal Electronic energy + Delta-G solvation = -25799.553100 eV Core-core repulsion = 21687.943244 eV Total energy + Delta-G solvation = -4111.609855 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.117 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.32323 -40.43701 -39.55870 -38.62392 -36.65064 -34.93163 -34.04220 -32.20215 -31.62129 -31.37974 -29.36715 -28.36022 -26.05139 -25.20456 -23.52927 -22.55128 -21.79593 -21.36309 -20.62661 -18.53593 -18.24342 -18.05859 -17.10142 -16.86560 -16.26399 -16.00179 -15.59460 -15.41666 -15.00540 -14.84743 -14.60458 -14.27174 -14.09940 -14.02697 -13.92855 -13.69507 -13.47973 -12.95664 -12.71328 -12.57606 -12.42665 -11.97873 -11.70731 -11.50619 -11.43614 -11.18176 -10.97983 -10.75371 -10.42783 -9.99620 -9.67887 -9.59479 -9.25322 -9.16837 -9.06644 -8.77133 -7.62404 -7.13497 -6.37558 -3.96646 0.55909 0.75427 2.13429 2.39549 2.65203 3.16660 3.17626 3.20105 3.22703 3.35898 3.79379 4.01329 4.22837 4.24768 4.27916 4.43800 4.64771 4.78578 4.79606 5.16846 5.26289 5.33248 5.42218 5.46848 5.60452 5.64561 5.66384 5.73144 5.87467 6.06273 6.13472 6.26259 6.29127 6.39301 6.45108 6.56974 6.87118 7.07227 7.11309 7.26567 7.39456 7.54193 7.86455 8.04640 8.07823 8.68956 9.07345 9.79448 10.80435 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.024117 B = 0.001979 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.731220 B =14148.427871 C =14976.099236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.391 4.391 8 H 0.093 0.907 9 O -0.174 6.174 10 C 0.167 3.833 11 C -0.246 4.246 12 C -0.059 4.059 13 C -0.237 4.237 14 C 0.192 3.808 15 N -0.681 5.681 16 C 0.698 3.302 17 O -0.558 6.558 18 N -0.745 5.745 19 C 0.180 3.820 20 C -0.116 4.116 21 C -0.070 4.070 22 C -0.157 4.157 23 C 0.103 3.897 24 F -0.140 7.140 25 C -0.156 4.156 26 C -0.069 4.069 27 C -0.186 4.186 28 H 0.269 0.731 29 H 0.127 0.873 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.401 0.599 33 H 0.395 0.605 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.222 -24.311 -3.012 24.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.110 0.890 9 O -0.077 6.077 10 C 0.112 3.888 11 C -0.266 4.266 12 C -0.078 4.078 13 C -0.259 4.259 14 C 0.098 3.902 15 N -0.328 5.328 16 C 0.398 3.602 17 O -0.433 6.433 18 N -0.402 5.402 19 C 0.056 3.944 20 C -0.117 4.117 21 C -0.088 4.088 22 C -0.175 4.175 23 C 0.084 3.916 24 F -0.119 7.119 25 C -0.175 4.175 26 C -0.088 4.088 27 C -0.208 4.208 28 H 0.079 0.921 29 H 0.145 0.855 30 H 0.129 0.871 31 H 0.125 0.875 32 H 0.236 0.764 33 H 0.229 0.771 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.227 -23.218 -3.440 23.577 hybrid contribution 0.831 -0.352 0.301 0.951 sum -1.396 -23.570 -3.139 23.819 Atomic orbital electron populations 1.70055 1.05945 1.27566 1.46019 1.25301 0.95838 0.98819 0.96670 0.85711 0.78871 0.80137 0.78669 1.19917 1.20330 1.19217 1.21339 0.91797 0.80826 1.52765 0.89014 1.83995 1.34225 1.11320 1.78160 1.19146 0.89990 0.87878 0.91787 1.21173 0.93775 0.99054 1.12619 1.20480 0.98332 0.91672 0.97298 1.20239 0.91788 0.97687 1.16147 1.16943 0.90505 0.83194 0.99528 1.42446 1.24214 1.10243 1.55918 1.15962 0.80931 0.83748 0.79513 1.91040 1.63071 1.34863 1.54295 1.45117 1.26465 1.07514 1.61077 1.20011 0.85589 0.91102 0.97670 1.20013 0.99723 0.96044 0.95879 1.21036 0.97741 0.92406 0.97626 1.21184 1.00197 0.96615 0.99540 1.17811 0.98258 0.78768 0.96787 1.91512 1.89824 1.34228 1.96286 1.21190 1.02982 0.94589 0.98735 1.21048 0.95580 0.94123 0.98021 1.20193 1.00762 0.89149 1.10686 0.92075 0.85506 0.87090 0.87490 0.76443 0.77127 0.90281 0.90208 0.84547 0.84519 0.84491 0.84484 0.84672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.00 13.67 55.48 0.76 -25.24 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.93 29.55 -169.99 -5.02 15.91 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.39 -11.22 9.49 30.89 0.29 -10.93 16 8 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 9 O -0.17 -5.19 9.76 0.03 0.00 -5.19 16 10 C 0.17 4.24 6.64 -39.14 -0.26 3.98 16 11 C -0.25 -5.47 9.17 -39.36 -0.36 -5.83 16 12 C -0.06 -1.08 10.03 -39.64 -0.40 -1.48 16 13 C -0.24 -4.06 9.96 -39.34 -0.39 -4.45 16 14 C 0.19 3.60 6.30 -83.71 -0.53 3.07 16 15 N -0.68 -9.74 5.34 -14.24 -0.08 -9.82 16 16 C 0.70 10.68 8.41 -86.92 -0.73 9.95 16 17 O -0.56 -11.56 13.78 5.29 0.07 -11.48 16 18 N -0.74 -7.55 5.55 -66.41 -0.37 -7.92 16 19 C 0.18 1.69 5.80 -5.19 -0.03 1.66 16 20 C -0.12 -0.84 5.25 -104.61 -0.55 -1.39 16 21 C -0.07 -0.46 9.70 -39.59 -0.38 -0.84 16 22 C -0.16 -1.05 10.03 -39.51 -0.40 -1.45 16 23 C 0.10 0.79 7.30 -39.42 -0.29 0.51 16 24 F -0.14 -1.22 17.27 2.25 0.04 -1.18 16 25 C -0.16 -1.06 10.03 -39.52 -0.40 -1.46 16 26 C -0.07 -0.46 9.70 -39.59 -0.38 -0.85 16 27 C -0.19 -4.34 8.64 -39.21 -0.34 -4.68 16 28 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.13 2.79 5.63 -52.49 -0.30 2.49 16 30 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.40 3.97 8.84 -40.82 -0.36 3.61 16 33 H 0.40 2.81 8.48 -40.82 -0.35 2.47 16 34 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 35 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 36 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.14 0.73 8.06 -52.48 -0.42 0.30 16 39 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.14 3.40 6.22 -52.49 -0.33 3.07 16 LS Contribution 355.36 15.07 5.36 5.36 Total: -1.00 -35.46 355.36 -8.59 -44.05 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -4.11 Total: 8.73 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -5.24 Total: -13.21 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: 0.31 Total: -42.97 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: 0.07 Total: -16.67 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.04 Total: -1.18 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.46 -8.59 -44.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048516921.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.814 kcal (2) G-P(sol) polarization free energy of solvation -35.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds