Wall clock time and date at job start Tue Mar 31 2020 06:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86798 * 119.99935 * 2 1 4 4 H 1.48504 * 109.47221 * 270.00365 * 3 2 1 5 5 H 1.48503 * 109.47224 * 29.99772 * 3 2 1 6 6 H 1.48496 * 109.47268 * 150.00461 * 3 2 1 7 7 C 1.38654 * 120.00326 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00041 * 179.97438 * 7 2 1 9 9 O 1.34832 * 119.99488 * 359.97438 * 7 2 1 10 10 C 1.35754 * 116.99540 * 174.96745 * 9 7 2 11 11 C 1.38944 * 120.03625 * 5.36149 * 10 9 7 12 12 C 1.38123 * 120.07326 * 180.02562 * 11 10 9 13 13 C 1.38204 * 120.13579 * 359.70117 * 12 11 10 14 14 C 1.38923 * 120.06663 * 0.55189 * 13 12 11 15 15 N 1.39939 * 120.03589 * 179.74440 * 14 13 12 16 16 C 1.34778 * 120.00299 * 214.85085 * 15 14 13 17 17 O 1.21590 * 119.99342 * 355.49764 * 16 15 14 18 18 N 1.34775 * 120.00357 * 175.49257 * 16 15 14 19 19 C 1.46493 * 119.99818 * 180.02562 * 18 16 15 20 20 C 1.50707 * 109.47001 * 180.02562 * 19 18 16 21 21 C 1.38242 * 119.97134 * 269.72658 * 20 19 18 22 22 C 1.38204 * 120.02462 * 179.71925 * 21 20 19 23 23 C 1.38460 * 119.97153 * 0.57798 * 22 21 20 24 24 F 1.35096 * 120.02550 * 179.67518 * 23 22 21 25 25 C 1.38462 * 119.94566 * 359.69901 * 23 22 21 26 26 C 1.38193 * 119.98058 * 359.97438 * 25 23 22 27 27 C 1.38734 * 120.03199 * 185.34169 * 10 9 7 28 28 H 0.96997 * 120.00294 * 0.02562 * 1 2 3 29 29 H 1.07998 * 119.96667 * 359.97438 * 11 10 9 30 30 H 1.08000 * 119.93508 * 180.02562 * 12 11 10 31 31 H 1.08001 * 119.97274 * 180.27829 * 13 12 11 32 32 H 0.97001 * 119.99913 * 34.85149 * 15 14 13 33 33 H 0.96998 * 119.99978 * 0.02562 * 18 16 15 34 34 H 1.09001 * 109.47630 * 60.00604 * 19 18 16 35 35 H 1.08999 * 109.47720 * 299.99836 * 19 18 16 36 36 H 1.08000 * 119.99091 * 359.97438 * 21 20 19 37 37 H 1.07997 * 120.01267 * 180.24891 * 22 21 20 38 38 H 1.08009 * 120.00991 * 179.97438 * 25 23 22 39 39 H 1.07997 * 119.99426 * 180.02562 * 26 25 23 40 40 H 1.07998 * 120.06931 * 0.04238 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.6999 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0701 -3.5045 -0.1072 11 6 3.4579 -3.4382 -0.0978 12 6 4.2068 -4.5936 -0.2068 13 6 3.5787 -5.8196 -0.3193 14 6 2.1915 -5.8921 -0.3346 15 7 1.5562 -7.1333 -0.4539 16 6 0.4010 -7.2358 -1.1404 17 8 -0.1319 -6.2379 -1.5862 18 7 -0.1636 -8.4444 -1.3329 19 6 -1.4190 -8.5558 -2.0796 20 6 -1.8341 -10.0029 -2.1513 21 6 -1.4119 -10.7910 -3.2057 22 6 -1.7871 -12.1196 -3.2695 23 6 -2.5960 -12.6581 -2.2832 24 9 -2.9688 -13.9549 -2.3480 25 6 -3.0229 -11.8661 -1.2307 26 6 -2.6409 -10.5396 -1.1654 27 6 1.4365 -4.7331 -0.2253 28 1 -0.4850 0.8400 -0.0004 29 1 3.9516 -2.4821 -0.0060 30 1 5.2854 -4.5395 -0.1988 31 1 4.1669 -6.7218 -0.3998 32 1 1.9474 -7.9198 -0.0425 33 1 0.2614 -9.2404 -0.9770 34 1 -1.2776 -8.1677 -3.0883 35 1 -2.1947 -7.9804 -1.5744 36 1 -0.7852 -10.3694 -3.9777 37 1 -1.4539 -12.7361 -4.0912 38 1 -3.6543 -12.2850 -0.4609 39 1 -2.9734 -9.9218 -0.3443 40 1 0.3580 -4.7872 -0.2332 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048516921.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:38 Heat of formation + Delta-G solvation = -64.812332 kcal Electronic energy + Delta-G solvation = -25800.618889 eV Core-core repulsion = 21687.943244 eV Total energy + Delta-G solvation = -4112.675645 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.117 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.94000 -41.70916 -40.55248 -40.03312 -38.29729 -35.98198 -35.51925 -34.23356 -32.22497 -32.14397 -31.01901 -29.85300 -27.35676 -26.81628 -24.05568 -23.95185 -23.09001 -22.45290 -21.98717 -19.97102 -19.73851 -18.91469 -18.65105 -17.54704 -17.49059 -16.74153 -16.63968 -16.61800 -16.45139 -16.28992 -15.94570 -15.60758 -15.49493 -15.30073 -14.76419 -14.74036 -14.48424 -14.35799 -14.20475 -13.63692 -13.51410 -13.27950 -13.11531 -12.92952 -12.65930 -12.63007 -12.33863 -12.10151 -11.99183 -11.57745 -11.29488 -10.94013 -10.74556 -10.22932 -10.09909 -9.72016 -9.26772 -8.81626 -8.44024 -6.13405 -0.03892 0.23870 0.51537 0.75019 1.35664 1.46342 1.54402 1.58617 2.06348 2.20383 2.55962 2.86732 3.20781 3.21663 3.24486 3.57204 3.63675 3.72351 3.94906 4.16837 4.19196 4.28560 4.40628 4.46752 4.60897 4.64440 4.74745 4.79542 4.95284 4.96009 5.07717 5.12440 5.14499 5.19137 5.33998 5.42941 5.48572 5.51623 5.68103 5.78609 5.85003 5.98917 6.06797 6.26034 6.99469 7.00546 7.50225 7.83524 8.79909 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.024117 B = 0.001979 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.731220 B =14148.427871 C =14976.099236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.030 4.030 3 Si 1.024 2.976 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.248 1.248 7 C -0.412 4.412 8 H 0.107 0.893 9 O -0.236 6.236 10 C 0.125 3.875 11 C -0.257 4.257 12 C -0.049 4.049 13 C -0.204 4.204 14 C 0.202 3.798 15 N -0.665 5.665 16 C 0.694 3.306 17 O -0.617 6.617 18 N -0.717 5.717 19 C 0.181 3.819 20 C -0.116 4.116 21 C -0.067 4.067 22 C -0.156 4.156 23 C 0.089 3.911 24 F -0.148 7.148 25 C -0.157 4.157 26 C -0.070 4.070 27 C -0.213 4.213 28 H 0.272 0.728 29 H 0.122 0.878 30 H 0.160 0.840 31 H 0.164 0.836 32 H 0.428 0.572 33 H 0.415 0.585 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.150 0.850 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.024 -27.083 -3.176 27.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.226 4.226 3 Si 0.843 3.157 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.171 1.171 7 C -0.488 4.488 8 H 0.124 0.876 9 O -0.143 6.143 10 C 0.074 3.926 11 C -0.276 4.276 12 C -0.067 4.067 13 C -0.225 4.225 14 C 0.107 3.893 15 N -0.314 5.314 16 C 0.395 3.605 17 O -0.496 6.496 18 N -0.375 5.375 19 C 0.058 3.942 20 C -0.117 4.117 21 C -0.086 4.086 22 C -0.175 4.175 23 C 0.070 3.930 24 F -0.127 7.127 25 C -0.176 4.176 26 C -0.088 4.088 27 C -0.235 4.235 28 H 0.080 0.920 29 H 0.140 0.860 30 H 0.177 0.823 31 H 0.182 0.818 32 H 0.267 0.733 33 H 0.252 0.748 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.168 0.832 37 H 0.170 0.830 38 H 0.168 0.832 39 H 0.164 0.836 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.062 -26.146 -3.585 26.412 hybrid contribution -0.123 0.074 0.314 0.346 sum 0.939 -26.072 -3.270 26.293 Atomic orbital electron populations 1.70227 1.08259 1.28717 1.49145 1.26720 0.96892 1.03048 0.95957 0.84522 0.77871 0.74154 0.79200 1.18922 1.19707 1.17117 1.21910 0.92685 0.81293 1.52941 0.87604 1.83961 1.36216 1.12695 1.81400 1.19697 0.91746 0.87424 0.93728 1.21319 0.92465 1.00778 1.13088 1.21024 1.00532 0.90385 0.94778 1.20864 0.90885 0.99434 1.11301 1.17066 0.91406 0.83319 0.97537 1.42212 1.23876 1.09659 1.55665 1.16207 0.80864 0.84263 0.79186 1.91032 1.64616 1.37362 1.56580 1.44897 1.26184 1.06481 1.59901 1.20001 0.84746 0.92577 0.96914 1.19798 1.00511 0.94643 0.96712 1.21162 0.97603 0.92267 0.97528 1.21361 0.99679 0.96731 0.99684 1.18059 0.98864 0.78603 0.97501 1.91493 1.89994 1.34831 1.96375 1.21345 1.02908 0.94445 0.98887 1.21151 0.95277 0.94241 0.98146 1.20211 0.99719 0.90644 1.12943 0.91956 0.85978 0.82260 0.81815 0.73288 0.74788 0.90970 0.91402 0.83245 0.82972 0.83176 0.83613 0.88059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.68 13.67 21.61 0.30 -59.39 16 2 C -0.03 -1.75 5.49 84.83 0.47 -1.28 16 3 Si 1.02 44.26 29.55 68.60 2.03 46.28 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 7 C -0.41 -25.04 9.49 67.92 0.64 -24.40 16 8 H 0.11 5.79 5.20 -2.91 -0.02 5.78 16 9 O -0.24 -15.24 9.76 -22.80 -0.22 -15.46 16 10 C 0.12 6.70 6.64 22.56 0.15 6.85 16 11 C -0.26 -11.33 9.17 22.41 0.21 -11.13 16 12 C -0.05 -1.59 10.03 22.23 0.22 -1.36 16 13 C -0.20 -5.95 9.96 22.43 0.22 -5.73 16 14 C 0.20 7.20 6.30 38.13 0.24 7.44 16 15 N -0.66 -17.33 5.34 -317.23 -1.69 -19.03 16 16 C 0.69 20.75 8.41 179.05 1.51 22.26 16 17 O -0.62 -26.62 13.78 -4.00 -0.06 -26.68 16 18 N -0.72 -13.35 5.55 -482.30 -2.68 -16.03 16 19 C 0.18 3.28 5.80 85.64 0.50 3.77 16 20 C -0.12 -1.50 5.25 -19.86 -0.10 -1.60 16 21 C -0.07 -0.74 9.70 22.26 0.22 -0.53 16 22 C -0.16 -1.77 10.03 22.31 0.22 -1.54 16 23 C 0.09 1.22 7.30 22.38 0.16 1.39 16 24 F -0.15 -2.40 17.27 44.97 0.78 -1.62 16 25 C -0.16 -1.88 10.03 22.31 0.22 -1.65 16 26 C -0.07 -0.82 9.70 22.26 0.22 -0.61 16 27 C -0.21 -10.38 8.64 22.51 0.19 -10.18 16 28 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 29 H 0.12 5.40 5.63 -2.91 -0.02 5.39 16 30 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 31 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 32 H 0.43 6.54 8.84 -92.71 -0.82 5.72 16 33 H 0.41 4.60 8.48 -92.71 -0.79 3.82 16 34 H 0.07 1.45 8.08 -2.39 -0.02 1.43 16 35 H 0.07 1.43 8.08 -2.39 -0.02 1.41 16 36 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 37 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 38 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 39 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 40 H 0.10 5.57 6.22 -2.91 -0.02 5.55 16 Total: -1.00 -87.11 355.36 3.25 -83.85 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: -0.48 Total: 26.37 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: 5.29 Total: -18.30 kcal Atomic # 7 Polarization: -90.37 SS G_CDS: -4.08 Total: -94.45 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -0.28 Total: -42.14 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.78 Total: -1.62 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -87.11 3.25 -83.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048516921.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.042 kcal (2) G-P(sol) polarization free energy of solvation -87.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds