Wall clock time and date at job start Tue Mar 31 2020 05:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47441 * 2 1 4 4 N 1.46508 * 109.47192 * 180.02562 * 3 2 1 5 5 C 1.36844 * 119.99968 * 96.69453 * 4 3 2 6 6 H 1.08005 * 120.00141 * 172.03180 * 5 4 3 7 7 C 1.39023 * 120.00474 * 352.02862 * 5 4 3 8 8 N 1.31391 * 119.99752 * 333.62246 * 7 5 4 9 9 Si 1.86793 * 120.00333 * 153.61928 * 7 5 4 10 10 H 1.48496 * 109.47365 * 94.98436 * 9 7 5 11 11 H 1.48504 * 109.47217 * 214.98299 * 9 7 5 12 12 H 1.48501 * 109.47052 * 334.98077 * 9 7 5 13 13 C 1.34774 * 119.99539 * 276.69330 * 4 3 2 14 14 O 1.21744 * 119.99709 * 185.10292 * 13 4 3 15 15 C 1.46520 * 120.00453 * 5.09543 * 13 4 3 16 16 C 1.36667 * 125.99631 * 186.19573 * 15 13 4 17 17 C 1.40326 * 106.70270 * 180.02562 * 16 15 13 18 18 C 1.35169 * 107.12776 * 359.97438 * 17 16 15 19 19 S 1.76197 * 125.60917 * 180.02562 * 18 17 16 20 20 O 1.42102 * 106.40009 * 203.53987 * 19 18 17 21 21 O 1.42098 * 106.40155 * 336.46329 * 19 18 17 22 22 N 1.65600 * 107.21818 * 90.00018 * 19 18 17 23 23 C 1.46500 * 120.00025 * 89.99730 * 22 19 18 24 24 C 1.46495 * 120.00195 * 270.00048 * 22 19 18 25 25 O 1.33964 * 108.77975 * 0.26309 * 18 17 16 26 26 H 1.08996 * 109.47045 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47014 * 300.00106 * 1 2 3 28 28 H 1.08995 * 109.46687 * 59.99975 * 1 2 3 29 29 H 1.08997 * 109.47381 * 239.99221 * 2 1 3 30 30 H 1.09008 * 109.47271 * 120.00183 * 2 1 3 31 31 H 1.09000 * 109.47104 * 59.99949 * 3 2 1 32 32 H 1.09003 * 109.46897 * 299.99605 * 3 2 1 33 33 H 0.97001 * 119.99800 * 179.97438 * 8 7 5 34 34 H 1.08003 * 126.64794 * 359.97438 * 16 15 13 35 35 H 1.07998 * 126.43546 * 180.02562 * 17 16 15 36 36 H 1.09000 * 109.47032 * 89.99965 * 23 22 19 37 37 H 1.08995 * 109.47514 * 210.00028 * 23 22 19 38 38 H 1.09006 * 109.47383 * 330.00095 * 23 22 19 39 39 H 1.08999 * 109.47060 * 359.97438 * 24 22 19 40 40 H 1.08998 * 109.47322 * 119.99692 * 24 22 19 41 41 H 1.09001 * 109.47291 * 239.99836 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1889 1.5807 -1.1779 6 1 5.2611 1.7100 -1.1677 7 6 3.5034 1.5548 -2.3871 8 7 2.3618 0.9112 -2.4814 9 14 4.2053 2.4349 -3.8778 10 1 4.9797 1.4723 -4.7018 11 1 3.0956 2.9990 -4.6875 12 1 5.0985 3.5331 -3.4290 13 6 4.1794 1.3061 1.1584 14 8 5.3932 1.3990 1.1709 15 6 3.4517 1.0465 2.4032 16 6 3.9939 1.0057 3.6571 17 6 2.9415 0.7278 4.5427 18 6 1.8171 0.6129 3.8014 19 16 0.2067 0.2670 4.4269 20 8 -0.5284 -0.3001 3.3511 21 8 0.3928 -0.3903 5.6729 22 7 -0.5096 1.7207 4.7676 23 6 -1.2940 2.4096 3.7398 24 6 -0.3588 2.3180 6.0968 25 8 2.1295 0.8003 2.5122 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9563 -0.8901 33 1 1.8833 0.8934 -3.3250 34 1 5.0314 1.1572 3.9160 35 1 3.0158 0.6257 5.6153 36 1 -2.3341 2.0896 3.8013 37 1 -1.2351 3.4863 3.8985 38 1 -0.8963 2.1653 2.7547 39 1 0.2525 1.6661 6.7208 40 1 0.1238 3.2910 6.0053 41 1 -1.3409 2.4410 6.5534 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056485240.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:08 Heat of formation + Delta-G solvation = -66.524119 kcal Electronic energy + Delta-G solvation = -28067.833861 eV Core-core repulsion = 24078.155150 eV Total energy + Delta-G solvation = -3989.678712 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -42.25076 -38.49704 -37.35412 -36.32800 -35.89267 -35.59237 -32.90623 -32.41387 -31.52993 -29.71241 -28.30183 -26.14082 -25.01229 -24.82014 -22.79776 -21.69281 -20.75565 -19.64351 -19.18792 -18.13911 -17.56336 -17.18358 -16.65430 -16.19514 -15.81426 -15.19208 -14.80193 -14.55292 -14.32612 -13.91844 -13.70993 -13.48849 -13.34794 -13.15643 -12.74725 -12.69488 -12.57985 -12.47994 -12.29672 -12.16497 -11.99702 -11.81517 -11.67811 -11.46720 -11.38025 -11.09425 -10.89395 -10.52304 -10.43783 -10.35031 -9.96207 -9.55751 -9.38087 -9.07119 -8.85347 -8.60738 -8.04272 -6.73110 -4.02095 0.20349 1.15791 2.37558 2.83288 3.00915 3.09680 3.17108 3.28043 3.65838 3.88317 4.00024 4.41873 4.56747 4.61463 4.83854 5.06469 5.14351 5.18640 5.31944 5.40486 5.52689 5.64801 5.71460 5.74487 5.87031 5.97782 6.13085 6.14444 6.26938 6.30025 6.49905 6.60154 6.78516 6.81279 6.93542 7.07655 7.16433 7.29237 7.61118 7.78699 8.18365 8.83338 9.04388 9.65544 10.23649 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.018602 B = 0.004375 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.815640 B = 6398.844380 C = 7158.574191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.120 4.120 3 C 0.115 3.885 4 N -0.395 5.395 5 C -0.302 4.302 6 H 0.115 0.885 7 C 0.036 3.964 8 N -0.828 5.828 9 Si 0.927 3.073 10 H -0.274 1.274 11 H -0.278 1.278 12 H -0.265 1.265 13 C 0.468 3.532 14 O -0.579 6.579 15 C 0.046 3.954 16 C -0.201 4.201 17 C -0.085 4.085 18 C -0.614 4.614 19 S 2.723 3.277 20 O -0.932 6.932 21 O -0.944 6.944 22 N -1.001 6.001 23 C 0.091 3.909 24 C 0.084 3.916 25 O -0.099 6.099 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.094 0.906 30 H 0.039 0.961 31 H 0.044 0.956 32 H 0.105 0.895 33 H 0.277 0.723 34 H 0.160 0.840 35 H 0.160 0.840 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.363 3.884 11.115 15.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.158 4.158 3 C -0.008 4.008 4 N -0.108 5.108 5 C -0.429 4.429 6 H 0.133 0.867 7 C -0.172 4.172 8 N -0.464 5.464 9 Si 0.752 3.248 10 H -0.199 1.199 11 H -0.203 1.203 12 H -0.189 1.189 13 C 0.258 3.742 14 O -0.468 6.468 15 C -0.013 4.013 16 C -0.222 4.222 17 C -0.106 4.106 18 C -0.747 4.747 19 S 2.807 3.193 20 O -0.923 6.923 21 O -0.935 6.935 22 N -0.841 5.841 23 C -0.054 4.054 24 C -0.062 4.062 25 O 0.008 5.992 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.123 0.877 33 H 0.088 0.912 34 H 0.178 0.822 35 H 0.177 0.823 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.538 3.101 10.769 14.716 hybrid contribution 0.946 0.766 -0.611 1.362 sum -8.593 3.867 10.158 13.855 Atomic orbital electron populations 1.21549 0.96346 1.00715 1.00534 1.21812 0.94995 0.96959 1.02074 1.21855 0.79423 0.98331 1.01232 1.44001 1.06341 1.54854 1.05647 1.19953 0.94793 1.46508 0.81667 0.86724 1.25461 0.96209 0.95928 0.99596 1.70157 1.15772 1.33037 1.27429 0.85908 0.78936 0.80140 0.79845 1.19934 1.20281 1.18876 1.16213 0.86347 0.90352 0.81291 1.90706 1.11724 1.60086 1.84261 1.23654 0.81147 0.98751 0.97745 1.21874 1.00974 1.08630 0.90771 1.21697 0.91226 0.96987 1.00689 1.35599 1.22602 1.27011 0.89447 1.01507 0.71855 0.72537 0.73382 1.93610 1.69009 1.74317 1.55316 1.93604 1.86393 1.70929 1.42548 1.57393 1.64500 1.42367 1.19846 1.21563 0.95566 0.98013 0.90299 1.21619 1.02866 0.99475 0.82202 1.84621 1.24815 1.66556 1.23213 0.93764 0.93340 0.93322 0.88761 0.94270 0.93818 0.87697 0.91246 0.82206 0.82250 0.91890 0.90761 0.90261 0.89623 0.91868 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.91 37.16 0.37 -2.13 16 2 C -0.12 -2.62 5.11 -26.73 -0.14 -2.76 16 3 C 0.11 2.57 4.16 -4.04 -0.02 2.55 16 4 N -0.40 -10.00 2.63 -116.35 -0.31 -10.31 16 5 C -0.30 -7.90 9.42 -15.02 -0.14 -8.04 16 6 H 0.12 3.14 7.30 -52.48 -0.38 2.76 16 7 C 0.04 0.87 4.87 -17.45 -0.08 0.78 16 8 N -0.83 -19.55 8.73 55.50 0.48 -19.07 16 9 Si 0.93 18.73 29.63 -169.99 -5.04 13.69 16 10 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 11 H -0.28 -5.45 7.11 56.52 0.40 -5.04 16 12 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 13 C 0.47 11.92 7.53 -12.92 -0.10 11.83 16 14 O -0.58 -16.24 16.46 5.15 0.08 -16.16 16 15 C 0.05 1.00 6.45 -36.81 -0.24 0.76 16 16 C -0.20 -3.78 10.63 -39.36 -0.42 -4.20 16 17 C -0.08 -1.35 10.58 -39.89 -0.42 -1.77 16 18 C -0.61 -10.39 7.35 29.64 0.22 -10.17 16 19 S 2.72 39.31 5.79 -107.50 -0.62 38.68 16 20 O -0.93 -15.78 16.58 -57.27 -0.95 -16.72 16 21 O -0.94 -14.48 16.39 -57.17 -0.94 -15.42 16 22 N -1.00 -10.88 3.58 -129.21 -0.46 -11.34 16 23 C 0.09 0.85 10.33 59.85 0.62 1.47 16 24 C 0.08 0.67 10.67 59.84 0.64 1.31 16 25 O -0.10 -1.98 5.46 4.87 0.03 -1.95 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.86 7.62 -51.93 -0.40 0.46 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.09 2.27 6.41 -51.93 -0.33 1.94 16 30 H 0.04 0.88 6.08 -51.92 -0.32 0.57 16 31 H 0.04 0.91 6.08 -51.93 -0.32 0.60 16 32 H 0.11 2.42 5.81 -51.93 -0.30 2.12 16 33 H 0.28 6.09 8.31 -40.82 -0.34 5.75 16 34 H 0.16 2.80 8.06 -52.48 -0.42 2.38 16 35 H 0.16 1.96 8.06 -52.49 -0.42 1.53 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 38 H 0.08 0.84 7.79 -51.93 -0.40 0.43 16 39 H 0.09 0.69 6.91 -51.93 -0.36 0.33 16 40 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 350.83 15.07 5.29 5.29 Total: -1.00 -31.56 350.83 -7.47 -39.03 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -5.32 Total: 4.66 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 0.29 Total: -10.37 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: -0.29 Total: -40.72 kcal Atomic # 8 Polarization: -48.48 SS G_CDS: -1.78 Total: -50.26 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.04 Total: 13.69 kcal Atomic # 16 Polarization: 39.31 SS G_CDS: -0.62 Total: 38.68 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.56 -7.47 -39.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056485240.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.496 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds