Wall clock time and date at job start Tue Mar 31 2020 04:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 120.00045 * 2 1 4 4 H 1.48500 * 109.47163 * 239.99941 * 3 2 1 5 5 H 1.48495 * 109.47408 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47122 * 119.99882 * 3 2 1 7 7 C 1.37873 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00262 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99993 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47271 * 180.02562 * 9 7 2 11 11 C 1.46500 * 120.00122 * 275.79031 * 10 9 7 12 12 C 1.50698 * 109.46810 * 269.99737 * 11 10 9 13 13 C 1.38669 * 120.41738 * 269.71517 * 12 11 10 14 14 C 1.38634 * 118.42068 * 179.78584 * 13 12 11 15 15 C 1.38226 * 119.15869 * 0.52087 * 14 13 12 16 16 N 1.31855 * 120.76217 * 359.71961 * 15 14 13 17 17 C 1.31883 * 121.72669 * 0.02562 * 16 15 14 18 18 C 1.34780 * 119.99588 * 95.78914 * 10 9 7 19 19 O 1.21564 * 119.99851 * 184.75639 * 18 10 9 20 20 C 1.47764 * 120.00191 * 4.75198 * 18 10 9 21 21 C 1.39623 * 120.15759 * 305.69345 * 20 18 10 22 22 C 1.37901 * 119.86359 * 180.02562 * 21 20 18 23 23 C 1.38425 * 120.18455 * 0.02562 * 22 21 20 24 24 C 1.38271 * 120.31662 * 359.97438 * 23 22 21 25 25 C 1.38156 * 120.13012 * 0.02562 * 24 23 22 26 26 Cl 1.73602 * 120.09319 * 179.97438 * 25 24 23 27 27 H 0.96996 * 119.99557 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.47259 * 60.00427 * 9 7 2 29 29 H 1.08998 * 109.47598 * 300.00340 * 9 7 2 30 30 H 1.08999 * 109.47061 * 29.99804 * 11 10 9 31 31 H 1.09001 * 109.46708 * 149.99659 * 11 10 9 32 32 H 1.08002 * 120.79405 * 0.03508 * 13 12 11 33 33 H 1.07994 * 120.42040 * 180.22257 * 14 13 12 34 34 H 1.07996 * 119.61936 * 179.74978 * 15 14 13 35 35 H 1.08005 * 119.61403 * 179.97438 * 17 16 15 36 36 H 1.07994 * 120.07000 * 359.97438 * 21 20 18 37 37 H 1.08001 * 119.90792 * 180.02562 * 22 21 20 38 38 H 1.07997 * 119.84224 * 180.02562 * 23 22 21 39 39 H 1.08000 * 119.93663 * 179.72215 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.7762 -4.0864 -1.2628 12 6 1.8983 -5.1673 -1.8388 13 6 2.1201 -6.4978 -1.5169 14 6 1.2847 -7.4578 -2.0668 15 6 0.2725 -7.0606 -2.9202 16 7 0.0941 -5.7863 -3.2079 17 6 0.8662 -4.8458 -2.6994 18 6 2.5513 -4.2014 1.1608 19 8 3.4050 -5.0667 1.1715 20 6 1.8956 -3.7949 2.4210 21 6 1.8837 -2.4524 2.8043 22 6 1.2704 -2.0799 3.9819 23 6 0.6676 -3.0330 4.7845 24 6 0.6749 -4.3647 4.4122 25 6 1.2855 -4.7524 3.2352 26 17 1.2947 -6.4247 2.7691 27 1 -0.4849 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8904 29 1 0.6246 -2.5571 0.8896 30 1 2.8403 -3.2566 -1.9667 31 1 3.7737 -4.4866 -1.0812 32 1 2.9221 -6.7791 -0.8505 33 1 1.4260 -8.5031 -1.8352 34 1 -0.3801 -7.8026 -3.3560 35 1 0.6897 -3.8123 -2.9587 36 1 2.3545 -1.7073 2.1802 37 1 1.2604 -1.0415 4.2788 38 1 0.1885 -2.7351 5.7054 39 1 0.2066 -5.1038 5.0453 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058004508.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:22 Heat of formation + Delta-G solvation = 21.827814 kcal Electronic energy + Delta-G solvation = -25788.966688 eV Core-core repulsion = 22108.384417 eV Total energy + Delta-G solvation = -3680.582271 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.17079 -39.51253 -37.88102 -36.12806 -35.28210 -33.18899 -32.20251 -31.54014 -30.55558 -30.36042 -27.60787 -26.19379 -23.55296 -23.31671 -22.72473 -22.29440 -21.57986 -19.05353 -17.04814 -16.94077 -16.58237 -16.28128 -15.85484 -15.68334 -15.27018 -14.79792 -14.73480 -14.25281 -13.89415 -13.45653 -13.44711 -13.16734 -12.87795 -12.80482 -12.65441 -12.36792 -11.88339 -11.71727 -11.58078 -11.23179 -11.15963 -11.06192 -11.00656 -10.75830 -10.59597 -10.29286 -9.92922 -9.58790 -9.29327 -9.22028 -8.75262 -8.73265 -8.48989 -8.41651 -7.87457 -6.28864 -4.37964 1.26796 1.32352 1.54723 1.57566 2.41630 3.15816 3.22120 3.22924 3.27449 3.68506 4.03829 4.18152 4.25834 4.68795 4.99662 5.00924 5.06450 5.12660 5.17477 5.27407 5.32438 5.36435 5.52071 5.64684 5.73631 5.86155 5.90804 6.06336 6.16338 6.24723 6.37058 6.43902 6.57026 6.63934 6.65286 6.77679 6.95573 7.10424 7.14632 7.39158 7.63490 7.92458 8.16079 8.21109 8.64984 8.83448 9.29312 10.76947 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.008760 B = 0.006354 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3195.566886 B = 4405.938668 C = 6755.201536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.071 3.929 3 Si 0.893 3.107 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.233 3.767 10 N -0.583 5.583 11 C 0.161 3.839 12 C -0.146 4.146 13 C -0.054 4.054 14 C -0.181 4.181 15 C 0.090 3.910 16 N -0.489 5.489 17 C 0.116 3.884 18 C 0.562 3.438 19 O -0.552 6.552 20 C -0.111 4.111 21 C -0.051 4.051 22 C -0.124 4.124 23 C -0.096 4.096 24 C -0.132 4.132 25 C 0.001 3.999 26 Cl -0.066 7.066 27 H 0.268 0.732 28 H 0.035 0.965 29 H 0.045 0.955 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.136 0.864 33 H 0.129 0.871 34 H 0.149 0.851 35 H 0.158 0.842 36 H 0.166 0.834 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.948 -8.357 3.467 9.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.113 3.887 10 N -0.312 5.312 11 C 0.038 3.962 12 C -0.149 4.149 13 C -0.081 4.081 14 C -0.201 4.201 15 C -0.067 4.067 16 N -0.198 5.198 17 C -0.041 4.041 18 C 0.350 3.650 19 O -0.432 6.432 20 C -0.115 4.115 21 C -0.069 4.069 22 C -0.142 4.142 23 C -0.115 4.115 24 C -0.150 4.150 25 C -0.027 4.027 26 Cl -0.037 7.037 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.154 0.846 33 H 0.147 0.853 34 H 0.167 0.833 35 H 0.175 0.825 36 H 0.183 0.817 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.529 -8.570 2.831 9.041 hybrid contribution 0.822 0.641 0.572 1.189 sum 1.351 -7.929 3.403 8.733 Atomic orbital electron populations 1.69924 1.05990 1.27609 1.48239 1.24929 0.94798 0.99140 0.94506 0.86632 0.79646 0.82696 0.79024 1.19991 1.21079 1.19944 1.21396 0.93610 0.90291 1.53127 0.91813 1.19601 0.87645 0.82267 0.99177 1.48147 1.45005 1.33968 1.04056 1.20143 0.95283 0.94703 0.86113 1.21407 0.99087 0.95765 0.98627 1.21640 0.98106 0.92338 0.96011 1.22086 0.97604 1.00507 0.99881 1.22683 0.95837 0.93048 0.95132 1.67702 1.26885 1.01437 1.23758 1.22804 0.89900 0.99007 0.92413 1.18098 0.82142 0.81170 0.83601 1.90691 1.32701 1.32899 1.86861 1.19795 1.01824 0.93711 0.96171 1.22086 0.95015 0.94490 0.95284 1.21225 0.98355 0.99884 0.94724 1.21191 0.98452 0.92199 0.99630 1.20839 1.01649 0.96924 0.95618 1.20879 1.00928 0.85070 0.95808 1.98357 1.97279 1.15888 1.92167 0.92260 0.94665 0.93751 0.88725 0.89589 0.84587 0.85348 0.83335 0.82493 0.81651 0.85228 0.85419 0.85181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.71 13.29 55.43 0.74 -21.97 16 2 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 19.06 29.54 -169.99 -5.02 14.04 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.55 -12.87 7.05 -34.44 -0.24 -13.12 16 8 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 9 C 0.23 5.21 4.68 -5.19 -0.02 5.19 16 10 N -0.58 -11.73 2.44 -177.57 -0.43 -12.16 16 11 C 0.16 2.84 5.61 -5.19 -0.03 2.81 16 12 C -0.15 -2.43 5.48 -104.49 -0.57 -3.00 16 13 C -0.05 -0.85 9.86 -39.28 -0.39 -1.24 16 14 C -0.18 -2.47 10.11 -39.44 -0.40 -2.87 16 15 C 0.09 1.27 11.18 -17.55 -0.20 1.08 16 16 N -0.49 -8.16 10.36 -13.25 -0.14 -8.30 16 17 C 0.12 1.96 10.86 -17.55 -0.19 1.77 16 18 C 0.56 11.57 6.59 -12.36 -0.08 11.49 16 19 O -0.55 -11.87 15.61 5.31 0.08 -11.79 16 20 C -0.11 -2.17 4.72 -104.94 -0.50 -2.66 16 21 C -0.05 -0.95 7.68 -39.19 -0.30 -1.25 16 22 C -0.12 -1.96 10.03 -39.64 -0.40 -2.35 16 23 C -0.10 -1.33 10.04 -39.50 -0.40 -1.73 16 24 C -0.13 -1.94 9.82 -39.60 -0.39 -2.33 16 25 C 0.00 0.01 6.35 -39.06 -0.25 -0.24 16 26 Cl -0.07 -1.12 27.38 -51.86 -1.42 -2.54 16 27 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 28 H 0.04 0.84 8.12 -51.93 -0.42 0.42 16 29 H 0.04 1.07 5.67 -51.93 -0.29 0.77 16 30 H 0.09 1.59 8.02 -51.93 -0.42 1.18 16 31 H 0.09 1.48 7.31 -51.93 -0.38 1.10 16 32 H 0.14 2.15 7.95 -52.49 -0.42 1.73 16 33 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.15 1.62 8.06 -52.49 -0.42 1.19 16 35 H 0.16 2.59 8.06 -52.48 -0.42 2.16 16 36 H 0.17 3.39 5.44 -52.49 -0.29 3.10 16 37 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 352.42 15.07 5.31 5.31 Total: -1.00 -27.74 352.42 -9.63 -37.37 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -4.30 Total: 6.87 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -4.45 Total: -6.83 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.17 Total: -42.43 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.08 Total: -11.79 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.04 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -1.42 Total: -2.54 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.74 -9.63 -37.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058004508.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.195 kcal (2) G-P(sol) polarization free energy of solvation -27.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds