Wall clock time and date at job start Tue Mar 31 2020 05:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 120.00012 * 2 1 4 4 H 1.48498 * 109.47033 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47149 * 300.00027 * 3 2 1 6 6 H 1.48502 * 109.47289 * 59.99887 * 3 2 1 7 7 C 1.38810 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99722 * 200.57980 * 7 2 1 9 9 N 1.36938 * 120.00029 * 20.58162 * 7 2 1 10 10 C 1.46501 * 119.99864 * 38.05537 * 9 7 2 11 11 C 1.50689 * 109.47390 * 89.99737 * 10 9 7 12 12 N 1.30972 * 126.44366 * 90.30089 * 11 10 9 13 13 C 1.35221 * 105.58480 * 180.12020 * 12 11 10 14 14 C 1.48423 * 126.41475 * 179.90310 * 13 12 11 15 15 C 1.39342 * 120.11975 * 359.96686 * 14 13 12 16 16 C 1.38003 * 119.87548 * 180.31750 * 15 14 13 17 17 C 1.38339 * 120.12002 * 359.68069 * 16 15 14 18 18 C 1.38297 * 120.24521 * 0.02562 * 17 16 15 19 19 N 1.48015 * 119.94380 * 179.97438 * 18 17 16 20 20 O 1.21801 * 119.99941 * 180.02562 * 19 18 17 21 21 O 1.21796 * 119.99655 * 0.02562 * 19 18 17 22 22 C 1.38046 * 120.11720 * 0.02562 * 18 17 16 23 23 N 1.30761 * 107.16870 * 359.64078 * 13 12 11 24 24 O 1.21293 * 110.09637 * 0.22306 * 23 13 12 25 25 C 1.46502 * 119.99787 * 218.04270 * 9 7 2 26 26 C 1.52998 * 117.49981 * 13.93735 * 25 9 7 27 27 C 1.52990 * 117.50383 * 305.30962 * 25 9 7 28 28 H 0.97000 * 119.99824 * 354.96269 * 1 2 3 29 29 H 1.09002 * 109.46868 * 329.98972 * 10 9 7 30 30 H 1.09001 * 109.46665 * 209.99830 * 10 9 7 31 31 H 1.08000 * 120.06332 * 359.97438 * 15 14 13 32 32 H 1.08003 * 119.93712 * 179.70138 * 16 15 14 33 33 H 1.08006 * 119.87808 * 179.97438 * 17 16 15 34 34 H 1.08000 * 120.06053 * 179.97438 * 22 18 17 35 35 H 1.09004 * 115.54473 * 159.63218 * 25 9 7 36 36 H 1.08998 * 117.49943 * 359.97438 * 26 25 9 37 37 H 1.08993 * 117.50229 * 145.01505 * 26 25 9 38 38 H 1.09003 * 117.50259 * 214.97870 * 27 25 9 39 39 H 1.09007 * 117.49910 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0386 -1.2322 0.3282 9 7 1.3911 -2.3500 -0.4179 10 6 0.4604 -2.3106 -1.5487 11 6 1.2161 -2.5519 -2.8299 12 7 1.4379 -3.7122 -3.3956 13 6 2.1508 -3.4415 -4.5123 14 6 2.6514 -4.4304 -5.4994 15 6 2.3980 -5.7886 -5.3185 16 6 2.8715 -6.7044 -6.2359 17 6 3.5907 -6.2755 -7.3371 18 6 3.8398 -4.9282 -7.5247 19 7 4.6106 -4.4767 -8.7050 20 8 4.8310 -3.2904 -8.8710 21 8 5.0244 -5.2916 -9.5101 22 6 3.3718 -4.0036 -6.6127 23 7 2.3117 -2.1448 -4.5627 24 8 1.7816 -1.6216 -3.6054 25 6 1.6596 -3.6174 0.2661 26 6 2.3688 -3.5529 1.6202 27 6 3.1191 -4.0597 0.3869 28 1 -0.4850 0.8368 0.0738 29 1 -0.0209 -1.3335 -1.5892 30 1 -0.2973 -3.0840 -1.4226 31 1 1.8370 -6.1246 -4.4590 32 1 2.6798 -7.7578 -6.0941 33 1 3.9598 -6.9956 -8.0525 34 1 3.5673 -2.9517 -6.7599 35 1 0.9079 -4.3946 0.1279 36 1 2.6361 -2.5676 2.0020 37 1 2.0839 -4.2877 2.3731 38 1 3.3279 -5.1280 0.3285 39 1 3.8798 -3.4079 -0.0430 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058049210.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:14 Heat of formation + Delta-G solvation = 144.307830 kcal Electronic energy + Delta-G solvation = -27177.833629 eV Core-core repulsion = 23094.146076 eV Total energy + Delta-G solvation = -4083.687552 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -45.00744 -42.36217 -39.71727 -37.37778 -36.74689 -35.48783 -34.17167 -32.82661 -32.30247 -31.28409 -30.30635 -26.99780 -26.58756 -24.86812 -24.32391 -23.15707 -22.21200 -21.54539 -21.17043 -20.16163 -19.34395 -18.78108 -17.72994 -17.64429 -17.18056 -16.83641 -16.47185 -15.76518 -15.44443 -15.27923 -14.65300 -14.33963 -14.26726 -13.75611 -13.63156 -13.12743 -12.66585 -12.54029 -12.15188 -11.93443 -11.73199 -11.64493 -11.42243 -11.36776 -11.30972 -11.10707 -11.00814 -10.77710 -10.73878 -10.64591 -10.24485 -10.16972 -9.93718 -9.90537 -9.51479 -9.04949 -8.75758 -6.93926 -6.21828 -3.78543 -0.41356 0.30440 1.07454 1.15394 1.72822 2.49371 3.18717 3.21878 3.30560 3.33132 3.36362 3.55767 4.01855 4.18674 4.20709 4.34474 4.50121 4.56212 4.75062 4.89209 4.95205 5.06042 5.10940 5.31996 5.43842 5.61641 5.70802 5.81415 5.85314 5.90087 5.96372 6.11973 6.19976 6.22388 6.32010 6.38653 6.43503 6.77327 6.92789 6.99477 7.44782 7.54058 8.10981 8.58333 8.73531 9.35264 9.88631 10.81952 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.015885 B = 0.003107 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.266167 B = 9009.271705 C = 9994.847779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.028 3.972 3 Si 0.904 3.096 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.284 1.284 7 C -0.279 4.279 8 H 0.069 0.931 9 N -0.528 5.528 10 C 0.219 3.781 11 C 0.211 3.789 12 N -0.497 5.497 13 C 0.180 3.820 14 C 0.007 3.993 15 C -0.029 4.029 16 C -0.117 4.117 17 C -0.049 4.049 18 C -0.046 4.046 19 N 0.030 4.970 20 O -0.157 6.157 21 O -0.160 6.160 22 C -0.029 4.029 23 N -0.386 5.386 24 O 0.087 5.913 25 C 0.123 3.877 26 C -0.186 4.186 27 C -0.222 4.222 28 H 0.265 0.735 29 H 0.132 0.868 30 H 0.085 0.915 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.473 -12.288 -8.239 14.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.175 4.175 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.211 1.211 7 C -0.408 4.408 8 H 0.087 0.913 9 N -0.243 5.243 10 C 0.088 3.912 11 C -0.011 4.011 12 N -0.232 5.232 13 C -0.090 4.090 14 C 0.005 3.995 15 C -0.049 4.049 16 C -0.136 4.136 17 C -0.069 4.069 18 C -0.129 4.129 19 N 0.550 4.450 20 O -0.373 6.373 21 O -0.376 6.376 22 C -0.050 4.050 23 N -0.094 5.094 24 O 0.028 5.972 25 C 0.015 3.985 26 C -0.225 4.225 27 C -0.263 4.263 28 H 0.075 0.925 29 H 0.149 0.851 30 H 0.103 0.897 31 H 0.175 0.825 32 H 0.173 0.827 33 H 0.174 0.826 34 H 0.178 0.822 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.341 -12.332 -8.366 14.963 hybrid contribution 0.821 1.055 -0.143 1.345 sum 2.162 -11.277 -8.509 14.292 Atomic orbital electron populations 1.69823 1.05722 1.27153 1.49192 1.25279 0.95210 0.99220 0.97808 0.86207 0.79930 0.82823 0.77832 1.19763 1.20625 1.21080 1.19048 0.94932 0.84488 1.42344 0.91308 1.43339 1.50609 1.03549 1.26830 1.20116 0.89408 1.06071 0.75612 1.31848 0.92820 0.80718 0.95665 1.71960 1.18449 1.26124 1.06661 1.23439 1.00503 0.89754 0.95312 1.17163 0.98976 0.91460 0.91946 1.21777 0.93730 0.90991 0.98353 1.21188 0.98086 1.01142 0.93157 1.21188 0.94701 0.92989 0.97985 1.20884 1.05875 0.95257 0.90907 1.43556 0.99126 1.00810 1.01514 1.94583 1.61340 1.00337 1.81051 1.94518 1.53245 1.50338 1.39481 1.21011 0.92208 1.01398 0.90415 1.74814 1.17544 1.09468 1.07566 1.85336 1.50177 1.36977 1.24738 1.21202 0.92026 0.89742 0.95525 1.23089 1.05749 1.02380 0.91252 1.23319 0.99299 0.99278 1.04398 0.92483 0.85077 0.89717 0.82514 0.82733 0.82595 0.82209 0.88626 0.88013 0.90341 0.90643 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.93 11.45 55.49 0.64 -21.29 16 2 C 0.03 0.67 4.97 -17.43 -0.09 0.59 16 3 Si 0.90 19.85 29.60 -169.99 -5.03 14.82 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.28 -6.75 8.04 -15.06 -0.12 -6.87 16 8 H 0.07 1.72 7.23 -52.49 -0.38 1.34 16 9 N -0.53 -11.52 2.76 -167.03 -0.46 -11.98 16 10 C 0.22 4.40 5.96 -5.20 -0.03 4.37 16 11 C 0.21 4.14 8.08 -12.99 -0.10 4.03 16 12 N -0.50 -8.98 11.26 -9.88 -0.11 -9.10 16 13 C 0.18 3.12 7.80 -156.11 -1.22 1.90 16 14 C 0.01 0.10 5.88 -104.89 -0.62 -0.52 16 15 C -0.03 -0.30 9.70 -39.26 -0.38 -0.68 16 16 C -0.12 -0.89 10.03 -39.63 -0.40 -1.29 16 17 C -0.05 -0.43 9.55 -39.52 -0.38 -0.81 16 18 C -0.05 -0.56 6.85 -80.00 -0.55 -1.10 16 19 N 0.03 0.41 4.45 33.94 0.15 0.56 16 20 O -0.16 -2.37 18.44 -29.46 -0.54 -2.92 16 21 O -0.16 -2.16 18.44 -29.46 -0.54 -2.70 16 22 C -0.03 -0.39 9.20 -39.25 -0.36 -0.75 16 23 N -0.39 -7.43 11.86 30.97 0.37 -7.06 16 24 O 0.09 1.80 11.29 18.03 0.20 2.00 16 25 C 0.12 2.36 6.61 -67.94 -0.45 1.91 16 26 C -0.19 -3.35 9.81 -26.73 -0.26 -3.61 16 27 C -0.22 -3.98 10.09 -26.74 -0.27 -4.25 16 28 H 0.26 6.38 8.32 -40.82 -0.34 6.04 16 29 H 0.13 2.92 5.52 -51.93 -0.29 2.63 16 30 H 0.08 1.52 8.04 -51.93 -0.42 1.10 16 31 H 0.16 1.51 7.88 -52.49 -0.41 1.10 16 32 H 0.16 0.62 8.06 -52.48 -0.42 0.20 16 33 H 0.16 1.04 7.60 -52.48 -0.40 0.64 16 34 H 0.16 2.26 7.42 -52.49 -0.39 1.87 16 35 H 0.10 1.65 8.10 -51.93 -0.42 1.23 16 36 H 0.10 2.03 6.95 -51.93 -0.36 1.67 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.08 1.64 8.01 -51.93 -0.42 1.22 16 LS Contribution 352.85 15.07 5.32 5.32 Total: -1.00 -26.99 352.85 -9.13 -36.12 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -3.89 Total: 3.31 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -5.22 Total: -7.08 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.58 Total: -48.87 kcal Atomic # 8 Polarization: -2.74 SS G_CDS: -0.88 Total: -3.62 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.82 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -26.99 -9.13 -36.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058049210.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.429 kcal (2) G-P(sol) polarization free energy of solvation -26.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds