Wall clock time and date at job start Tue Mar 31 2020 06:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86804 * 119.99816 * 2 1 4 4 H 1.48503 * 109.46907 * 269.99654 * 3 2 1 5 5 H 1.48494 * 109.47408 * 29.99740 * 3 2 1 6 6 H 1.48502 * 109.46962 * 150.00260 * 3 2 1 7 7 C 1.37871 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00387 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99810 * 179.97438 * 7 2 1 10 10 N 1.46904 * 109.46913 * 179.97438 * 9 7 2 11 11 C 1.47010 * 111.00490 * 293.63776 * 10 9 7 12 12 C 1.53093 * 109.26062 * 177.60563 * 11 10 9 13 13 O 1.43021 * 109.25545 * 56.85021 * 12 11 10 14 14 C 1.43010 * 113.73792 * 301.32836 * 13 12 11 15 15 H 1.08999 * 109.54453 * 298.71404 * 14 13 12 16 16 C 1.50704 * 109.50552 * 178.60360 * 14 13 12 17 17 N 1.28796 * 124.75519 * 134.94351 * 16 14 13 18 18 C 1.32518 * 117.12566 * 180.26659 * 17 16 14 19 19 C 1.48354 * 122.96091 * 180.02562 * 18 17 16 20 20 C 1.39366 * 120.12100 * 4.71194 * 19 18 17 21 21 C 1.38019 * 119.86789 * 179.80787 * 20 19 18 22 22 C 1.38326 * 120.12535 * 0.44414 * 21 20 19 23 23 C 1.38334 * 120.25081 * 359.78819 * 22 21 20 24 24 C 1.38010 * 120.12221 * 359.97438 * 23 22 21 25 25 C 1.34834 * 114.07404 * 359.97438 * 18 17 16 26 26 S 1.70918 * 124.75576 * 315.24442 * 16 14 13 27 27 C 1.47020 * 110.99602 * 170.00288 * 10 9 7 28 28 H 0.97004 * 119.99611 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.46668 * 60.00587 * 9 7 2 30 30 H 1.08995 * 109.47263 * 300.00579 * 9 7 2 31 31 H 1.09000 * 109.50729 * 297.54407 * 11 10 9 32 32 H 1.09007 * 109.50146 * 57.67227 * 11 10 9 33 33 H 1.08998 * 109.50868 * 176.78120 * 12 11 10 34 34 H 1.08995 * 109.50939 * 296.91617 * 12 11 10 35 35 H 1.07995 * 120.06560 * 0.02562 * 20 19 18 36 36 H 1.07999 * 119.93361 * 180.20144 * 21 20 19 37 37 H 1.07998 * 119.87712 * 179.76117 * 22 21 20 38 38 H 1.07998 * 119.94003 * 179.97438 * 23 22 21 39 39 H 1.07996 * 120.06328 * 179.97438 * 24 23 22 40 40 H 1.08000 * 126.06298 * 179.97438 * 25 18 17 41 41 H 1.08998 * 109.50222 * 62.45987 * 27 10 9 42 42 H 1.08995 * 109.50301 * 302.32590 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5791 0.0013 11 6 3.6585 -3.2579 1.2595 12 6 4.1334 -4.7119 1.1944 13 8 5.5388 -4.7377 0.9307 14 6 5.9080 -4.0859 -0.2875 15 1 5.4306 -4.5880 -1.1289 16 6 7.4050 -4.1393 -0.4531 17 7 8.0122 -4.4443 -1.5472 18 6 9.3371 -4.4497 -1.5216 19 6 10.1660 -4.7811 -2.7066 20 6 9.5613 -5.0099 -3.9412 21 6 10.3377 -5.3139 -5.0410 22 6 11.7127 -5.4007 -4.9176 23 6 12.3179 -5.1793 -3.6935 24 6 11.5518 -4.8698 -2.5880 25 6 9.8654 -4.1265 -0.3239 26 16 8.5348 -3.8107 0.7866 27 6 5.4511 -2.6255 -0.2375 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6797 0.8896 30 1 3.8746 -0.6807 -0.8904 31 1 4.1485 -2.7518 2.0913 32 1 2.5782 -3.2339 1.4034 33 1 3.9327 -5.2033 2.1464 34 1 3.6038 -5.2324 0.3966 35 1 8.4876 -4.9460 -4.0379 36 1 9.8705 -5.4882 -5.9990 37 1 12.3161 -5.6426 -5.7800 38 1 13.3918 -5.2487 -3.6027 39 1 12.0252 -4.6976 -1.6328 40 1 10.9177 -4.0719 -0.0871 41 1 5.9697 -2.1093 0.5704 42 1 5.6794 -2.1400 -1.1863 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065474762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:30 Heat of formation + Delta-G solvation = 40.337522 kcal Electronic energy + Delta-G solvation = -24645.513325 eV Core-core repulsion = 21103.610496 eV Total energy + Delta-G solvation = -3541.902829 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.42079 -39.36688 -38.51034 -35.47659 -33.10097 -32.47136 -31.27760 -31.05722 -29.08644 -28.68989 -26.37816 -24.80693 -23.83215 -22.66406 -22.25468 -21.20523 -20.24442 -19.55397 -18.29638 -16.98139 -16.93862 -16.15173 -15.96562 -15.49515 -15.38607 -14.78518 -14.72118 -14.55317 -14.40505 -14.14545 -13.79778 -13.66613 -13.31605 -13.29849 -12.89337 -12.62683 -12.38787 -11.98039 -11.69993 -11.39923 -11.37939 -11.21064 -11.05822 -10.88205 -10.63630 -10.40688 -9.99697 -9.93626 -9.74452 -9.56606 -9.46704 -9.23265 -9.18775 -8.63288 -8.30591 -7.59821 -6.11766 -4.10133 0.30958 1.08521 1.17092 1.22211 1.65162 2.67833 3.24329 3.31841 3.32915 3.33433 3.71331 4.20016 4.36079 4.43797 4.58783 4.71809 4.80198 4.90596 4.98115 5.03433 5.08536 5.20094 5.21210 5.30832 5.40939 5.45841 5.58097 5.62991 5.71107 5.79992 5.81300 5.85633 6.00534 6.21045 6.26696 6.29232 6.32442 6.42997 6.71024 6.71032 6.82498 7.18210 7.45698 7.56864 7.69427 7.84869 8.54966 8.95106 9.49214 11.00983 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.016390 B = 0.002689 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.940124 B =10410.363430 C =11088.108922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.874 3.126 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.512 4.512 8 H 0.082 0.918 9 C 0.163 3.837 10 N -0.522 5.522 11 C 0.024 3.976 12 C 0.067 3.933 13 O -0.386 6.386 14 C 0.170 3.830 15 H 0.099 0.901 16 C 0.067 3.933 17 N -0.458 5.458 18 C 0.107 3.893 19 C -0.017 4.017 20 C -0.086 4.086 21 C -0.122 4.122 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.105 4.105 25 C -0.266 4.266 26 S 0.176 5.824 27 C 0.030 3.970 28 H 0.265 0.735 29 H -0.008 1.008 30 H 0.027 0.973 31 H 0.033 0.967 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.134 0.866 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.178 0.822 41 H 0.035 0.965 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.812 -10.949 -2.647 26.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.701 3.299 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.550 4.550 8 H 0.100 0.900 9 C 0.037 3.963 10 N -0.247 5.247 11 C -0.104 4.104 12 C -0.010 4.010 13 O -0.305 6.305 14 C 0.109 3.891 15 H 0.117 0.883 16 C -0.212 4.212 17 N -0.173 5.173 18 C -0.024 4.024 19 C -0.020 4.020 20 C -0.105 4.105 21 C -0.140 4.140 22 C -0.135 4.135 23 C -0.140 4.140 24 C -0.124 4.124 25 C -0.406 4.406 26 S 0.433 5.567 27 C -0.100 4.100 28 H 0.074 0.926 29 H 0.009 0.991 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.081 0.919 35 H 0.152 0.848 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.196 0.804 41 H 0.054 0.946 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 23.090 -10.978 -2.248 25.665 hybrid contribution 1.121 1.379 -0.260 1.797 sum 24.211 -9.598 -2.508 26.164 Atomic orbital electron populations 1.69889 1.06092 1.26953 1.50690 1.24882 0.94746 0.98844 0.94709 0.86883 0.80290 0.84038 0.78699 1.20046 1.21089 1.19298 1.20969 0.88409 0.94826 1.50821 0.90005 1.20209 0.97311 0.83361 0.95392 1.62177 1.09008 1.20052 1.33492 1.22720 1.03438 0.93347 0.90922 1.22826 0.79616 0.96970 1.01566 1.87871 1.25503 1.77244 1.39854 1.20300 0.84798 0.94458 0.89581 0.88300 1.26473 1.00550 1.02128 0.92033 1.66014 1.07972 1.16394 1.26929 1.18707 0.88017 1.02377 0.93336 1.18067 0.91812 1.00987 0.91127 1.21360 1.00927 0.96789 0.91397 1.21170 0.93900 1.00169 0.98749 1.21252 0.94971 0.99680 0.97604 1.21026 0.99796 1.00507 0.92712 1.21113 0.92348 0.99864 0.99080 1.27152 1.04479 1.12136 0.96824 1.84124 0.95657 1.61703 1.15231 1.22709 0.91349 0.94032 1.01957 0.92554 0.99065 0.95527 0.94843 0.87834 0.88284 0.91907 0.84764 0.85663 0.85990 0.85772 0.85866 0.80442 0.94638 0.89664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 13.96 55.43 0.77 -26.19 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 21.16 27.47 -169.99 -4.67 16.49 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.51 -14.15 9.04 -34.44 -0.31 -14.46 16 8 H 0.08 2.44 7.39 -52.49 -0.39 2.05 16 9 C 0.16 3.88 3.79 -4.97 -0.02 3.86 16 10 N -0.52 -10.68 4.72 -235.74 -1.11 -11.79 16 11 C 0.02 0.44 5.46 -3.72 -0.02 0.42 16 12 C 0.07 0.99 7.01 37.21 0.26 1.25 16 13 O -0.39 -6.04 10.29 -35.23 -0.36 -6.40 16 14 C 0.17 2.68 3.32 -27.83 -0.09 2.59 16 15 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 16 C 0.07 0.99 6.33 -13.55 -0.09 0.91 16 17 N -0.46 -6.84 9.93 -8.42 -0.08 -6.92 16 18 C 0.11 1.40 6.64 -84.61 -0.56 0.84 16 19 C -0.02 -0.20 5.88 -104.89 -0.62 -0.82 16 20 C -0.09 -0.97 9.64 -39.24 -0.38 -1.35 16 21 C -0.12 -1.12 10.03 -39.63 -0.40 -1.52 16 22 C -0.12 -0.94 10.04 -39.51 -0.40 -1.33 16 23 C -0.12 -0.98 10.03 -39.63 -0.40 -1.37 16 24 C -0.10 -0.97 9.48 -39.24 -0.37 -1.34 16 25 C -0.27 -2.94 10.62 29.53 0.31 -2.63 16 26 S 0.18 2.15 22.98 -107.50 -2.47 -0.32 16 27 C 0.03 0.52 4.91 -3.71 -0.02 0.50 16 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 29 H -0.01 -0.20 7.17 -51.93 -0.37 -0.57 16 30 H 0.03 0.64 7.47 -51.93 -0.39 0.25 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.10 2.05 6.83 -51.93 -0.35 1.69 16 33 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.13 1.60 7.71 -52.49 -0.40 1.20 16 36 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.12 0.87 6.69 -52.49 -0.35 0.52 16 40 H 0.18 1.38 6.92 -52.49 -0.36 1.02 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 1.48 8.09 -51.93 -0.42 1.06 16 LS Contribution 359.24 15.07 5.41 5.41 Total: -1.00 -31.35 359.24 -11.29 -42.64 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -5.59 Total: -0.35 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -3.19 Total: -12.56 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: -0.42 Total: -44.91 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.36 Total: -6.40 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.47 Total: -0.32 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.35 -11.29 -42.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065474762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.977 kcal (2) G-P(sol) polarization free energy of solvation -31.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds