Wall clock time and date at job start Tue Mar 31 2020 06:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47238 * 85.92223 * 3 2 1 5 5 N 1.46498 * 109.47191 * 180.02562 * 4 3 2 6 6 C 1.46501 * 119.99723 * 269.99808 * 5 4 3 7 7 C 1.50694 * 109.47211 * 270.00112 * 6 5 4 8 8 H 1.08003 * 120.00425 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00353 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99833 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00167 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47384 * 90.00103 * 11 9 7 13 13 H 1.48499 * 109.47224 * 209.99708 * 11 9 7 14 14 H 1.48491 * 109.47276 * 329.99690 * 11 9 7 15 15 C 1.34772 * 120.00113 * 89.99746 * 5 4 3 16 16 O 1.21280 * 119.99725 * 180.02562 * 15 5 4 17 17 C 1.50699 * 120.00332 * 0.02562 * 15 5 4 18 18 N 1.46501 * 109.47371 * 180.02562 * 17 15 5 19 19 N 1.28713 * 125.31578 * 89.97045 * 18 17 15 20 20 N 1.28980 * 108.99417 * 179.97438 * 19 18 17 21 21 C 1.34209 * 107.25288 * 0.02562 * 20 19 18 22 22 C 1.47887 * 126.70623 * 180.02562 * 21 20 19 23 23 C 1.35894 * 125.92489 * 0.02562 * 22 21 20 24 24 C 1.40943 * 106.74463 * 180.02562 * 23 22 21 25 25 C 1.34733 * 107.02359 * 0.02562 * 24 23 22 26 26 O 1.34289 * 108.66594 * 0.26393 * 25 24 23 27 27 N 1.28872 * 125.31297 * 270.28838 * 18 17 15 28 28 H 1.08996 * 109.46978 * 325.92030 * 3 2 1 29 29 H 1.08998 * 109.46973 * 205.92286 * 3 2 1 30 30 H 1.09003 * 109.47052 * 59.99354 * 4 3 2 31 31 H 1.09005 * 109.46901 * 300.00100 * 4 3 2 32 32 H 1.09001 * 109.47144 * 30.00090 * 6 5 4 33 33 H 1.08997 * 109.47133 * 149.99593 * 6 5 4 34 34 H 0.96994 * 119.99893 * 180.02562 * 10 9 7 35 35 H 1.08999 * 109.46733 * 59.99888 * 17 15 5 36 36 H 1.09003 * 109.46880 * 300.00314 * 17 15 5 37 37 H 1.07998 * 126.62445 * 0.02867 * 23 22 21 38 38 H 1.07990 * 126.48778 * 180.02562 * 24 23 22 39 39 H 1.08002 * 125.66362 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 -0.1017 -1.4389 5 7 4.5831 -0.1017 -1.4388 6 6 5.3155 1.1639 -1.5289 7 6 5.5667 1.4970 -2.9769 8 1 5.2155 0.8327 -3.7527 9 6 6.2448 2.6499 -3.3116 10 7 6.6721 3.4592 -2.3670 11 14 6.5568 3.0624 -5.1065 12 1 5.4271 3.8703 -5.6324 13 1 7.8173 3.8386 -5.2243 14 1 6.6739 1.8064 -5.8900 15 6 5.2570 -1.2658 -1.3559 16 8 6.4698 -1.2657 -1.3554 17 6 4.5036 -2.5677 -1.2638 18 7 5.4557 -3.6783 -1.1840 19 7 5.9388 -4.1675 -0.0959 20 7 6.7430 -5.1321 -0.3899 21 6 6.7579 -5.2442 -1.7272 22 6 7.5372 -6.2161 -2.5242 23 6 8.3742 -7.1649 -2.0282 24 6 8.9008 -7.8606 -3.1350 25 6 8.3649 -7.3069 -4.2403 26 8 7.5463 -6.3097 -3.8677 27 7 5.9447 -4.3143 -2.1926 28 1 2.9717 -0.8503 0.5758 29 1 2.9709 0.9251 0.4492 30 1 2.7543 0.7493 -2.0147 31 1 2.7551 -1.0262 -1.8881 32 1 4.7263 1.9581 -1.0703 33 1 6.2678 1.0705 -1.0070 34 1 7.1488 4.2704 -2.6024 35 1 3.8774 -2.6883 -2.1478 36 1 3.8765 -2.5624 -0.3723 37 1 8.5934 -7.3501 -0.9870 38 1 9.6013 -8.6819 -3.1033 39 1 8.5645 -7.6113 -5.2571 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067230996.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:03 Heat of formation + Delta-G solvation = 151.668054 kcal Electronic energy + Delta-G solvation = -26809.753125 eV Core-core repulsion = 22758.677487 eV Total energy + Delta-G solvation = -4051.075638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.123 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.34745 -42.70870 -39.69747 -37.07808 -35.65557 -35.10761 -33.46080 -33.25426 -33.00551 -31.09489 -30.61506 -28.96831 -27.12968 -24.40758 -24.33359 -23.90905 -22.63277 -21.56691 -21.06535 -19.36057 -18.44341 -18.02579 -17.64621 -17.18488 -16.58287 -16.49796 -15.99634 -15.70241 -15.46384 -15.00166 -14.89612 -14.25218 -14.05739 -13.84597 -13.41455 -13.24944 -13.07503 -12.90169 -12.79726 -12.64887 -12.55826 -12.31743 -12.03378 -11.92653 -11.44176 -11.23638 -11.14918 -11.08130 -11.03362 -11.02120 -10.74669 -10.32171 -10.14170 -9.88003 -9.47619 -8.58384 -8.55282 -8.17275 -6.20534 -4.26144 0.82290 1.26364 1.65055 2.14144 2.42305 2.55162 2.68053 2.77156 2.78384 3.22014 3.27535 3.30234 3.36164 3.72848 3.88059 4.25493 4.31489 4.47138 4.57243 4.64995 4.75497 4.81494 4.82720 4.90427 5.15327 5.18377 5.23770 5.50554 5.60272 5.62143 5.70330 5.75538 5.84249 5.96915 6.19915 6.63216 6.82166 7.07530 7.20318 7.43961 7.73818 7.86013 8.00988 8.23799 8.40885 8.77541 9.40183 10.87716 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.009076 B = 0.003451 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.414321 B = 8112.462563 C =10403.467178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.214 3.786 3 C -0.052 4.052 4 C 0.109 3.891 5 N -0.585 5.585 6 C 0.246 3.754 7 C -0.535 4.535 8 H 0.060 0.940 9 C 0.065 3.935 10 N -0.891 5.891 11 Si 0.898 3.102 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.273 1.273 15 C 0.498 3.502 16 O -0.509 6.509 17 C 0.100 3.900 18 N -0.113 5.113 19 N -0.041 5.041 20 N -0.259 5.259 21 C 0.235 3.765 22 C 0.063 3.937 23 C -0.146 4.146 24 C -0.217 4.217 25 C -0.017 4.017 26 O -0.159 6.159 27 N -0.273 5.273 28 H 0.107 0.893 29 H 0.122 0.878 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.042 0.958 33 H 0.049 0.951 34 H 0.265 0.735 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.161 0.839 38 H 0.157 0.843 39 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.893 -17.671 1.306 17.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.104 4.104 3 C -0.094 4.094 4 C -0.017 4.017 5 N -0.317 5.317 6 C 0.128 3.872 7 C -0.574 4.574 8 H 0.078 0.922 9 C -0.138 4.138 10 N -0.529 5.529 11 Si 0.725 3.275 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.198 1.198 15 C 0.280 3.720 16 O -0.384 6.384 17 C -0.024 4.024 18 N -0.024 5.024 19 N -0.034 5.034 20 N -0.133 5.133 21 C -0.044 4.044 22 C 0.010 3.990 23 C -0.168 4.168 24 C -0.236 4.236 25 C -0.086 4.086 26 O -0.052 6.052 27 N -0.124 5.124 28 H 0.125 0.875 29 H 0.140 0.860 30 H 0.122 0.878 31 H 0.095 0.905 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.162 0.838 36 H 0.162 0.838 37 H 0.179 0.821 38 H 0.174 0.826 39 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -4.275 -16.882 1.687 17.497 hybrid contribution 0.891 0.169 -1.407 1.674 sum -3.385 -16.714 0.280 17.055 Atomic orbital electron populations 1.81240 1.12992 1.09083 1.08311 1.28998 0.94994 0.93052 0.93357 1.19891 0.81609 1.06907 1.00947 1.21476 0.81589 1.04782 0.93856 1.48190 1.05173 1.07867 1.70430 1.19478 0.92705 0.77041 0.97968 1.21368 1.37372 1.06756 0.91885 0.92202 1.24909 0.95047 0.96021 0.97843 1.69909 1.37890 1.12799 1.32345 0.86491 0.77826 0.78505 0.84632 1.20503 1.21011 1.19818 1.19896 0.88346 0.84485 0.79224 1.90825 1.13094 1.86001 1.48435 1.22424 0.89142 0.82230 1.08580 1.49354 1.28992 1.23140 1.00899 1.78911 1.06880 1.05201 1.12394 1.76037 1.14544 1.11970 1.10704 1.21772 0.98256 0.95560 0.88794 1.17919 1.02272 0.98430 0.80353 1.21819 0.97929 0.95901 1.01197 1.21817 1.05626 1.04519 0.91648 1.24295 0.94100 0.89567 1.00672 1.84122 1.54068 1.45712 1.21337 1.75120 1.13346 1.07628 1.16286 0.87489 0.86003 0.87751 0.90533 0.94025 0.93325 0.92489 0.83785 0.83819 0.82098 0.82558 0.77282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.75 18.54 42.15 0.78 -4.97 16 2 C 0.21 2.16 15.43 -20.76 -0.32 1.84 16 3 C -0.05 -0.42 6.03 -29.52 -0.18 -0.59 16 4 C 0.11 1.15 5.17 -4.04 -0.02 1.13 16 5 N -0.58 -9.40 2.46 -175.06 -0.43 -9.83 16 6 C 0.25 5.42 5.16 -5.20 -0.03 5.39 16 7 C -0.54 -13.64 9.39 -34.44 -0.32 -13.96 16 8 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -24.70 13.29 55.43 0.74 -23.96 16 11 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 15 C 0.50 8.39 7.74 -10.99 -0.09 8.31 16 16 O -0.51 -11.61 16.01 5.56 0.09 -11.52 16 17 C 0.10 1.16 5.63 -5.19 -0.03 1.13 16 18 N -0.11 -1.73 3.48 -11.67 -0.04 -1.77 16 19 N -0.04 -0.66 13.23 60.35 0.80 0.14 16 20 N -0.26 -4.25 12.53 32.08 0.40 -3.84 16 21 C 0.24 3.82 8.20 -156.25 -1.28 2.54 16 22 C 0.06 0.89 7.26 -36.47 -0.26 0.63 16 23 C -0.15 -1.65 10.84 -39.40 -0.43 -2.07 16 24 C -0.22 -1.91 10.89 -39.80 -0.43 -2.34 16 25 C -0.02 -0.15 12.08 29.49 0.36 0.21 16 26 O -0.16 -2.09 10.67 4.70 0.05 -2.04 16 27 N -0.27 -4.60 12.18 32.09 0.39 -4.21 16 28 H 0.11 0.59 7.22 -51.93 -0.38 0.22 16 29 H 0.12 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.10 1.21 8.07 -51.93 -0.42 0.79 16 31 H 0.08 0.57 6.44 -51.93 -0.33 0.24 16 32 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.05 1.25 7.42 -51.93 -0.39 0.87 16 34 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 35 H 0.14 1.24 7.40 -51.93 -0.38 0.85 16 36 H 0.14 1.00 7.19 -51.93 -0.37 0.62 16 37 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.21 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 362.75 15.07 5.47 5.47 Total: -1.00 -36.59 362.75 -3.84 -40.43 By element: Atomic # 1 Polarization: 0.47 SS G_CDS: -3.93 Total: -3.45 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -3.13 Total: 3.82 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 2.64 Total: -48.44 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.14 Total: -13.57 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.59 -3.84 -40.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067230996.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.097 kcal (2) G-P(sol) polarization free energy of solvation -36.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds