Wall clock time and date at job start Tue Mar 31 2020 05:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99842 * 2 1 4 4 H 1.48498 * 109.47126 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47267 * 300.00482 * 3 2 1 6 6 H 1.48505 * 109.46963 * 60.00478 * 3 2 1 7 7 C 1.37877 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99972 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99741 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46749 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46848 * 180.02562 * 10 9 7 12 12 S 1.81401 * 109.47140 * 180.02562 * 11 10 9 13 13 O 1.42099 * 110.54277 * 68.37357 * 12 11 10 14 14 O 1.42101 * 110.54336 * 291.62447 * 12 11 10 15 15 N 1.65598 * 104.45092 * 179.97438 * 12 11 10 16 16 C 1.46503 * 119.99773 * 65.00223 * 15 12 11 17 17 C 1.53000 * 109.47362 * 165.00205 * 16 15 12 18 18 N 1.46493 * 109.47245 * 180.02562 * 17 16 15 19 19 C 1.34778 * 119.99793 * 179.97438 * 18 17 16 20 20 O 1.21695 * 120.00192 * 359.97438 * 19 18 17 21 21 C 1.46661 * 119.99796 * 179.97438 * 19 18 17 22 22 C 1.36547 * 125.98711 * 179.97438 * 21 19 18 23 23 C 1.40360 * 106.70833 * 180.02562 * 22 21 19 24 24 C 1.35131 * 107.11647 * 359.97438 * 23 22 21 25 25 O 1.33934 * 108.76477 * 0.02562 * 24 23 22 26 26 H 0.97000 * 119.99789 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47225 * 60.00720 * 9 7 2 28 28 H 1.08992 * 109.47460 * 300.00310 * 9 7 2 29 29 H 1.09000 * 109.47026 * 60.00732 * 10 9 7 30 30 H 1.08994 * 109.47284 * 299.99767 * 10 9 7 31 31 H 1.08995 * 109.47485 * 59.99930 * 11 10 9 32 32 H 1.09006 * 109.47411 * 300.00001 * 11 10 9 33 33 H 0.97001 * 120.00588 * 245.00065 * 15 12 11 34 34 H 1.08997 * 109.47626 * 44.99513 * 16 15 12 35 35 H 1.09001 * 109.46962 * 284.99838 * 16 15 12 36 36 H 1.08997 * 109.47315 * 59.99117 * 17 16 15 37 37 H 1.09001 * 109.46782 * 299.99743 * 17 16 15 38 38 H 0.96998 * 120.00266 * 359.97438 * 18 17 16 39 39 H 1.08005 * 126.64485 * 0.02562 * 22 21 19 40 40 H 1.08003 * 126.44294 * 180.02562 * 23 22 21 41 41 H 1.07997 * 125.61851 * 180.26772 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 16 2.6592 -6.3659 -0.0004 13 8 3.3550 -6.4263 1.2371 14 8 3.3568 -6.4261 -1.2369 15 7 1.7088 -7.7220 -0.0005 16 6 0.8499 -8.0144 -1.1507 17 6 0.3763 -9.4674 -1.0773 18 7 -0.4822 -9.7600 -2.2277 19 6 -1.0180 -10.9880 -2.3737 20 8 -0.7883 -11.8539 -1.5500 21 6 -1.8779 -11.2807 -3.5251 22 6 -2.4811 -12.4761 -3.7927 23 6 -3.2017 -12.3065 -4.9852 24 6 -3.0096 -11.0310 -5.3880 25 8 -2.2112 -10.4162 -4.5057 26 1 -0.4850 0.8401 0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8896 29 1 2.8720 -3.6043 0.8895 30 1 2.8720 -3.6043 -0.8905 31 1 0.8540 -5.0446 -0.8913 32 1 0.8534 -5.0451 0.8886 33 1 1.7209 -8.3228 0.7610 34 1 1.4117 -7.8615 -2.0720 35 1 -0.0139 -7.3497 -1.1373 36 1 -0.1856 -9.6204 -0.1559 37 1 1.2400 -10.1322 -1.0906 38 1 -0.6649 -9.0699 -2.8844 39 1 -2.4163 -13.3775 -3.2013 40 1 -3.7982 -13.0545 -5.4863 41 1 -3.4336 -10.5803 -6.2731 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068875972.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:59 Heat of formation + Delta-G solvation = -106.272023 kcal Electronic energy + Delta-G solvation = -24641.970774 eV Core-core repulsion = 20650.568464 eV Total energy + Delta-G solvation = -3991.402310 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.13104 -39.91255 -37.07807 -36.65105 -35.82052 -34.71727 -34.41059 -33.48609 -32.22456 -30.74600 -28.54621 -27.85736 -24.22561 -23.77914 -22.74302 -22.17174 -20.86308 -20.68239 -19.31007 -19.10798 -17.63888 -16.94908 -16.87044 -16.66782 -16.34355 -16.06986 -15.93987 -15.67119 -15.00131 -14.62971 -14.54301 -14.42252 -14.16132 -13.56828 -13.47065 -13.13854 -12.72647 -12.62006 -12.46403 -12.29211 -12.00781 -11.89366 -11.83579 -11.79508 -11.28587 -10.96313 -10.87984 -10.80365 -10.54090 -10.46525 -9.99938 -9.89317 -9.67721 -9.37638 -9.14674 -9.12589 -8.44269 -6.09046 -4.12064 0.36310 0.59209 1.88765 2.15694 2.53087 2.73377 2.98270 3.27251 3.34971 3.39813 3.86549 4.13442 4.24016 4.35950 4.39919 4.42732 4.56531 4.64456 4.95858 4.98097 5.12017 5.14237 5.25359 5.27818 5.30290 5.41505 5.42364 5.55772 5.81707 5.83079 5.84705 6.22062 6.32031 6.39974 6.73722 6.83087 6.93839 7.53245 7.58154 7.62667 7.89081 8.29328 8.94503 9.52953 11.02175 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.014716 B = 0.002066 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.213757 B =13551.060754 C =15034.611590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.030 3.970 10 C -0.106 4.106 11 C -0.608 4.608 12 S 2.604 3.396 13 O -0.959 6.959 14 O -0.960 6.960 15 N -1.122 6.122 16 C 0.102 3.898 17 C 0.113 3.887 18 N -0.718 5.718 19 C 0.606 3.394 20 O -0.518 6.518 21 C -0.083 4.083 22 C -0.117 4.117 23 C -0.227 4.227 24 C -0.002 4.002 25 O -0.163 6.163 26 H 0.261 0.739 27 H 0.020 0.980 28 H 0.021 0.979 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.126 0.874 32 H 0.130 0.870 33 H 0.417 0.583 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.410 0.590 39 H 0.161 0.839 40 H 0.158 0.842 41 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.259 -24.304 -8.995 26.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.008 4.008 10 C -0.146 4.146 11 C -0.740 4.740 12 S 2.700 3.300 13 O -0.950 6.950 14 O -0.950 6.950 15 N -0.881 5.881 16 C -0.025 4.025 17 C -0.012 4.012 18 N -0.370 5.370 19 C 0.393 3.607 20 O -0.395 6.395 21 C -0.135 4.135 22 C -0.138 4.138 23 C -0.246 4.246 24 C -0.072 4.072 25 O -0.059 6.059 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.251 0.749 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.245 0.755 39 H 0.178 0.822 40 H 0.175 0.825 41 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -6.146 -24.397 -8.540 26.570 hybrid contribution -0.677 1.043 -0.137 1.251 sum -6.823 -23.355 -8.677 25.832 Atomic orbital electron populations 1.69967 1.06093 1.26699 1.50674 1.25029 0.94901 0.99423 0.95094 0.86492 0.80190 0.83467 0.77622 1.19592 1.20941 1.20945 1.21292 0.93312 0.90869 1.50947 0.92284 1.19068 0.93531 0.90488 0.97728 1.21510 0.99405 0.91603 1.02062 1.30541 1.16340 1.15830 1.11279 1.05278 0.75489 0.75047 0.74232 1.93592 1.70522 1.85765 1.45085 1.93573 1.70087 1.85640 1.45728 1.55635 1.62233 1.43018 1.27183 1.21386 0.95044 0.96079 0.89977 1.21549 0.94849 0.95688 0.89095 1.45709 1.50413 1.13137 1.27771 1.16480 0.78753 0.82551 0.82953 1.90909 1.60487 1.46237 1.41910 1.21998 1.07268 0.90726 0.93478 1.22012 0.96678 0.97931 0.97158 1.21902 1.06082 0.97942 0.98679 1.24486 0.94622 0.93052 0.94994 1.84071 1.52647 1.39592 1.29544 0.92939 0.96130 0.96111 0.91491 0.91507 0.85516 0.85180 0.74865 0.89239 0.90656 0.90019 0.89950 0.75484 0.82152 0.82465 0.77136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.53 -14.58 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.03 0.74 4.97 -27.88 -0.14 0.61 16 10 C -0.11 -2.06 5.16 -26.73 -0.14 -2.20 16 11 C -0.61 -8.56 6.07 37.16 0.23 -8.34 16 12 S 2.60 34.67 5.46 -107.50 -0.59 34.08 16 13 O -0.96 -15.88 18.08 -57.54 -1.04 -16.92 16 14 O -0.96 -15.65 17.50 -57.54 -1.01 -16.65 16 15 N -1.12 -10.24 5.89 -10.61 -0.06 -10.31 16 16 C 0.10 0.77 6.25 -4.04 -0.03 0.75 16 17 C 0.11 0.85 5.82 -4.05 -0.02 0.82 16 18 N -0.72 -5.50 5.55 -61.63 -0.34 -5.84 16 19 C 0.61 6.05 7.79 -12.86 -0.10 5.95 16 20 O -0.52 -6.72 16.86 5.19 0.09 -6.63 16 21 C -0.08 -0.73 7.13 -36.79 -0.26 -0.99 16 22 C -0.12 -0.92 10.62 -39.39 -0.42 -1.34 16 23 C -0.23 -1.28 10.87 -39.89 -0.43 -1.72 16 24 C 0.00 -0.01 12.08 29.63 0.36 0.35 16 25 O -0.16 -1.21 10.40 5.00 0.05 -1.16 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.13 1.53 8.14 -51.93 -0.42 1.10 16 32 H 0.13 1.64 8.14 -51.92 -0.42 1.21 16 33 H 0.42 3.10 8.62 -34.48 -0.30 2.80 16 34 H 0.09 0.69 7.70 -51.93 -0.40 0.29 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.41 2.33 8.23 -40.82 -0.34 1.99 16 39 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 40 H 0.16 0.51 8.06 -52.48 -0.42 0.09 16 41 H 0.21 0.22 8.06 -52.49 -0.42 -0.20 16 LS Contribution 373.24 15.07 5.62 5.62 Total: -1.00 -38.03 373.24 -8.57 -46.60 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -5.65 Total: -0.13 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -1.37 Total: -19.50 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.33 Total: -41.65 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -1.91 Total: -41.36 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 34.67 SS G_CDS: -0.59 Total: 34.08 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -38.03 -8.57 -46.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068875972.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.670 kcal (2) G-P(sol) polarization free energy of solvation -38.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds