Wall clock time and date at job start Tue Mar 31 2020 06:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99723 * 2 1 4 4 H 1.48502 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47094 * 299.99833 * 3 2 1 6 6 H 1.48502 * 109.46977 * 59.99713 * 3 2 1 7 7 C 1.37875 * 120.00413 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99941 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99888 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47223 * 180.02562 * 9 7 2 11 11 O 1.42895 * 109.47384 * 179.97438 * 10 9 7 12 12 C 1.35979 * 117.00429 * 179.97438 * 11 10 9 13 13 C 1.38791 * 120.49278 * 0.02562 * 12 11 10 14 14 C 1.38791 * 118.44629 * 179.97438 * 13 12 11 15 15 C 1.38083 * 119.35972 * 0.25129 * 14 13 12 16 16 N 1.31966 * 120.95424 * 359.47561 * 15 14 13 17 17 C 1.32285 * 121.68865 * 0.53579 * 16 15 14 18 18 N 1.39484 * 119.73172 * 179.75670 * 17 16 15 19 19 C 1.34780 * 119.99794 * 359.97129 * 18 17 16 20 20 O 1.21557 * 120.00021 * 0.02562 * 19 18 17 21 21 C 1.47819 * 120.00182 * 179.97438 * 19 18 17 22 22 C 1.39619 * 120.12952 * 359.73580 * 21 19 18 23 23 C 1.37943 * 119.89677 * 179.69647 * 22 21 19 24 24 C 1.38345 * 120.17357 * 0.59427 * 23 22 21 25 25 C 1.38544 * 120.27403 * 359.67867 * 24 23 22 26 26 F 1.35104 * 119.95159 * 180.02562 * 25 24 23 27 27 C 1.38210 * 120.09644 * 0.02562 * 25 24 23 28 28 H 0.96995 * 120.00583 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47113 * 59.99744 * 9 7 2 30 30 H 1.08997 * 109.46835 * 300.00170 * 9 7 2 31 31 H 1.08997 * 109.47356 * 59.99806 * 10 9 7 32 32 H 1.09003 * 109.47109 * 300.00494 * 10 9 7 33 33 H 1.07999 * 120.77918 * 359.95105 * 13 12 11 34 34 H 1.08002 * 120.31752 * 179.97438 * 14 13 12 35 35 H 1.07994 * 119.52148 * 179.74696 * 15 14 13 36 36 H 0.97003 * 120.00730 * 179.97438 * 18 17 16 37 37 H 1.07995 * 120.04627 * 359.97209 * 22 21 19 38 38 H 1.07997 * 119.90636 * 180.29877 * 23 22 21 39 39 H 1.08000 * 119.85966 * 179.70131 * 24 23 22 40 40 H 1.08000 * 120.08800 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 8 1.5310 -4.8996 0.0024 12 6 2.2716 -6.0400 0.0030 13 6 3.6582 -5.9792 0.0036 14 6 4.3720 -7.1695 0.0048 15 6 3.6882 -8.3691 0.0001 16 7 2.3689 -8.3983 0.0048 17 6 1.6492 -7.2884 0.0037 18 7 0.2566 -7.3669 0.0038 19 6 -0.3505 -8.5702 0.0044 20 8 0.3156 -9.5870 0.0053 21 6 -1.8263 -8.6535 0.0050 22 6 -2.5941 -7.4874 0.0105 23 6 -3.9710 -7.5707 0.0048 24 6 -4.5929 -8.8065 0.0059 25 6 -3.8380 -9.9682 0.0061 26 9 -4.4521 -11.1716 0.0066 27 6 -2.4577 -9.8979 0.0057 28 1 -0.4851 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8903 31 1 2.8714 -3.6039 0.8922 32 1 2.8728 -3.6046 -0.8877 33 1 4.1697 -5.0281 0.0028 34 1 5.4520 -7.1575 0.0048 35 1 4.2411 -9.2968 -0.0032 36 1 -0.2751 -6.5555 0.0034 37 1 -2.1107 -6.5217 0.0149 38 1 -4.5650 -6.6687 0.0042 39 1 -5.6713 -8.8658 0.0062 40 1 -1.8694 -10.8036 0.0054 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069442613.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:23 Heat of formation + Delta-G solvation = -64.909324 kcal Electronic energy + Delta-G solvation = -26386.725864 eV Core-core repulsion = 22274.046013 eV Total energy + Delta-G solvation = -4112.679851 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.117 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.99433 -42.18607 -40.92357 -39.41202 -38.90220 -36.15713 -35.43954 -33.03768 -32.66647 -32.12370 -31.60794 -30.20280 -27.16601 -26.04895 -24.60539 -23.95285 -23.59291 -22.69607 -21.55187 -20.02760 -19.27445 -18.74976 -18.04912 -17.72974 -17.33126 -17.20094 -17.11780 -16.75618 -16.74485 -16.43447 -16.26489 -15.94286 -15.29747 -15.16300 -14.88839 -14.86397 -14.34855 -14.26211 -14.15090 -13.65242 -13.31545 -13.31370 -13.01264 -12.78067 -12.77854 -12.45160 -12.43045 -11.94927 -11.71666 -11.62684 -11.51547 -11.36703 -10.59833 -10.44932 -10.27634 -10.24352 -9.90644 -8.89953 -8.24295 -6.36069 -0.50500 0.05245 0.16488 0.27455 1.43165 1.44201 1.56287 1.65175 1.66799 2.09773 2.45078 2.57137 2.87805 3.03409 3.11367 3.30186 3.56838 3.69889 3.84583 3.90039 3.92864 4.02744 4.11380 4.21520 4.31241 4.34358 4.45466 4.58185 4.76363 4.88012 4.94613 4.96794 5.07113 5.12677 5.18790 5.20999 5.32718 5.52339 5.53149 5.70455 5.74879 6.08048 6.09955 6.31330 6.78758 6.82548 7.15546 7.33855 8.88352 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.010794 B = 0.002875 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.378140 B = 9735.758462 C =12308.688663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.968 3.032 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.543 4.543 8 H 0.070 0.930 9 C 0.030 3.970 10 C 0.083 3.917 11 O -0.328 6.328 12 C 0.046 3.954 13 C -0.148 4.148 14 C -0.141 4.141 15 C 0.073 3.927 16 N -0.474 5.474 17 C 0.307 3.693 18 N -0.644 5.644 19 C 0.549 3.451 20 O -0.511 6.511 21 C -0.119 4.119 22 C -0.094 4.094 23 C -0.086 4.086 24 C -0.114 4.114 25 C 0.080 3.920 26 F -0.141 7.141 27 C -0.106 4.106 28 H 0.266 0.734 29 H 0.003 0.997 30 H 0.003 0.997 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.159 0.841 34 H 0.177 0.823 35 H 0.187 0.813 36 H 0.429 0.571 37 H 0.147 0.853 38 H 0.175 0.825 39 H 0.171 0.829 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.355 -15.648 0.002 15.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.792 3.208 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.581 4.581 8 H 0.088 0.912 9 C -0.007 4.007 10 C 0.008 3.992 11 O -0.241 6.241 12 C -0.005 4.005 13 C -0.174 4.174 14 C -0.162 4.162 15 C -0.084 4.084 16 N -0.190 5.190 17 C 0.076 3.924 18 N -0.292 5.292 19 C 0.338 3.662 20 O -0.384 6.384 21 C -0.123 4.123 22 C -0.113 4.113 23 C -0.104 4.104 24 C -0.133 4.133 25 C 0.061 3.939 26 F -0.120 7.120 27 C -0.126 4.126 28 H 0.075 0.925 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.177 0.823 34 H 0.195 0.805 35 H 0.204 0.796 36 H 0.269 0.731 37 H 0.165 0.835 38 H 0.193 0.807 39 H 0.188 0.812 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.766 -17.095 0.008 17.318 hybrid contribution 0.449 1.833 0.001 1.887 sum -2.316 -15.263 0.008 15.438 Atomic orbital electron populations 1.70087 1.07778 1.28012 1.50770 1.25910 0.95752 1.03271 0.94399 0.85358 0.79193 0.78554 0.77699 1.18261 1.20520 1.20532 1.21422 0.93841 0.91083 1.51748 0.91216 1.18946 0.94515 0.90827 0.96441 1.22980 0.95690 0.79533 1.00954 1.86016 1.36650 1.13009 1.88447 1.19707 0.92170 0.86100 1.02490 1.21928 0.91360 1.01928 1.02231 1.22311 1.03166 0.91002 0.99673 1.23072 0.87962 0.99900 0.97432 1.67664 1.09647 1.27249 1.14418 1.17925 0.85142 0.87257 1.02116 1.43328 1.03865 1.10430 1.71594 1.18687 0.88254 0.82893 0.76417 1.90832 1.66334 1.34848 1.46407 1.19542 0.91179 0.94735 1.06816 1.21729 0.95289 0.97518 0.96755 1.21402 0.93617 0.98697 0.96685 1.21757 1.02509 0.90490 0.98551 1.17643 0.90171 0.81418 1.04676 1.91512 1.82938 1.43422 1.94122 1.21159 0.93423 0.98472 0.99508 0.92542 0.97809 0.97818 0.91757 0.91744 0.82328 0.80530 0.79610 0.73103 0.83540 0.80744 0.81166 0.84424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.90 13.29 21.45 0.28 -52.62 16 2 C 0.01 0.30 5.46 84.65 0.46 0.76 16 3 Si 0.97 41.19 29.54 68.60 2.03 43.22 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 6 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 7 C -0.54 -28.28 9.11 25.60 0.23 -28.05 16 8 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.03 1.46 5.34 29.85 0.16 1.62 16 10 C 0.08 3.11 4.70 71.98 0.34 3.45 16 11 O -0.33 -11.71 9.38 -93.31 -0.88 -12.59 16 12 C 0.05 1.47 6.72 22.71 0.15 1.62 16 13 C -0.15 -3.86 9.14 22.53 0.21 -3.66 16 14 C -0.14 -2.96 10.10 22.37 0.23 -2.73 16 15 C 0.07 1.80 11.17 84.64 0.95 2.74 16 16 N -0.47 -15.60 7.87 -192.63 -1.52 -17.12 16 17 C 0.31 10.15 7.44 133.02 0.99 11.14 16 18 N -0.64 -19.43 5.34 -310.66 -1.66 -21.09 16 19 C 0.55 16.90 7.74 86.78 0.67 17.57 16 20 O -0.51 -18.93 14.60 -3.90 -0.06 -18.98 16 21 C -0.12 -2.90 5.87 -20.09 -0.12 -3.02 16 22 C -0.09 -1.76 9.54 22.53 0.21 -1.55 16 23 C -0.09 -1.20 10.03 22.23 0.22 -0.98 16 24 C -0.11 -1.64 10.02 22.37 0.22 -1.42 16 25 C 0.08 1.58 7.29 22.34 0.16 1.75 16 26 F -0.14 -2.96 17.26 44.97 0.78 -2.19 16 27 C -0.11 -2.48 9.57 22.58 0.22 -2.27 16 28 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 29 H 0.00 0.18 8.14 -2.39 -0.02 0.17 16 30 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.06 2.26 7.70 -2.39 -0.02 2.24 16 32 H 0.06 2.26 7.70 -2.39 -0.02 2.24 16 33 H 0.16 3.68 6.44 -2.91 -0.02 3.66 16 34 H 0.18 2.23 8.06 -2.91 -0.02 2.20 16 35 H 0.19 3.30 8.06 -2.91 -0.02 3.28 16 36 H 0.43 11.39 6.08 -92.71 -0.56 10.83 16 37 H 0.15 2.45 6.40 -2.91 -0.02 2.43 16 38 H 0.18 1.38 8.06 -2.91 -0.02 1.35 16 39 H 0.17 1.43 8.06 -2.91 -0.02 1.40 16 40 H 0.14 3.43 7.65 -2.91 -0.02 3.41 16 Total: -1.00 -70.69 354.38 4.82 -65.87 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.54 Total: 18.51 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: 5.31 Total: -3.01 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -2.89 Total: -90.83 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -0.93 Total: -31.57 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.78 Total: -2.19 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -70.69 4.82 -65.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069442613.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.957 kcal (2) G-P(sol) polarization free energy of solvation -70.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds