Wall clock time and date at job start Tue Mar 31 2020 06:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99741 * 3 2 1 5 5 H 1.48488 * 109.47487 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00561 * 3 2 1 7 7 C 1.37874 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46748 * 179.97438 * 10 9 7 12 12 C 1.35973 * 116.99587 * 179.97438 * 11 10 9 13 13 C 1.38787 * 120.50046 * 0.02562 * 12 11 10 14 14 C 1.38784 * 118.45017 * 179.97438 * 13 12 11 15 15 C 1.38082 * 119.36023 * 359.97438 * 14 13 12 16 16 N 1.31958 * 120.95573 * 0.02562 * 15 14 13 17 17 C 1.32295 * 121.68710 * 359.68625 * 16 15 14 18 18 N 1.39488 * 119.72977 * 180.28227 * 17 16 15 19 19 C 1.34779 * 119.99858 * 0.29331 * 18 17 16 20 20 O 1.21569 * 120.00422 * 359.97438 * 19 18 17 21 21 C 1.47695 * 119.99572 * 179.97438 * 19 18 17 22 22 C 1.39658 * 120.12144 * 359.72144 * 21 19 18 23 23 C 1.37839 * 119.87972 * 179.81110 * 22 21 19 24 24 C 1.38664 * 120.11826 * 0.44495 * 23 22 21 25 25 F 1.35092 * 119.88245 * 179.76735 * 24 23 22 26 26 C 1.38662 * 120.23697 * 359.78998 * 24 23 22 27 27 C 1.37830 * 120.12448 * 359.97438 * 26 24 23 28 28 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 30 30 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 31 31 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 32 32 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 33 33 H 1.08002 * 120.77481 * 359.94976 * 13 12 11 34 34 H 1.07997 * 120.32337 * 180.02562 * 14 13 12 35 35 H 1.08000 * 119.52625 * 180.02562 * 15 14 13 36 36 H 0.96999 * 120.00131 * 180.28978 * 18 17 16 37 37 H 1.08000 * 120.06382 * 0.02562 * 22 21 19 38 38 H 1.07992 * 119.94489 * 180.20980 * 23 22 21 39 39 H 1.08001 * 119.93332 * 179.97438 * 26 24 23 40 40 H 1.08000 * 120.06146 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 8 5.4506 -2.6365 -0.0011 12 6 6.0678 -3.8481 -0.0006 13 6 5.3221 -5.0186 0.0004 14 6 5.9959 -6.2318 0.0004 15 6 7.3767 -6.2394 -0.0013 16 7 8.0616 -5.1115 -0.0022 17 6 7.4601 -3.9332 -0.0079 18 7 8.2244 -2.7664 -0.0146 19 6 9.5701 -2.8423 -0.0214 20 8 10.1177 -3.9276 -0.0211 21 6 10.3793 -1.6068 -0.0291 22 6 9.7527 -0.3587 -0.0353 23 6 10.5128 0.7912 -0.0386 24 6 11.8971 0.7103 -0.0451 25 9 12.6373 1.8403 -0.0530 26 6 12.5242 -0.5264 -0.0439 27 6 11.7739 -1.6825 -0.0357 28 1 -0.4850 0.8401 0.0004 29 1 3.8753 -0.6796 0.8894 30 1 3.8746 -0.6807 -0.8905 31 1 3.6585 -3.1502 0.8903 32 1 3.6578 -3.1505 -0.8897 33 1 4.2425 -4.9860 0.0017 34 1 5.4457 -7.1611 0.0007 35 1 7.9038 -7.1820 -0.0017 36 1 7.7875 -1.9004 -0.0145 37 1 8.6747 -0.2944 -0.0341 38 1 10.0294 1.7569 -0.0400 39 1 13.6027 -0.5837 -0.0494 40 1 12.2634 -2.6452 -0.0352 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069702971.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:58 Heat of formation + Delta-G solvation = -43.943080 kcal Electronic energy + Delta-G solvation = -26449.646454 eV Core-core repulsion = 22337.875768 eV Total energy + Delta-G solvation = -4111.770686 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.117 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.33421 -41.12507 -39.95700 -38.41483 -37.81143 -35.06609 -33.48892 -31.99963 -31.59497 -31.32004 -30.70301 -29.14102 -25.72062 -24.76516 -23.50054 -23.10286 -22.69479 -20.97134 -20.42155 -18.94579 -18.13003 -17.76407 -17.59041 -16.66791 -16.41491 -16.09797 -16.05452 -15.93097 -15.27564 -15.14409 -14.93949 -14.39675 -14.28797 -14.09966 -13.96565 -13.71081 -13.54405 -13.22323 -12.96844 -12.61293 -12.57307 -12.25527 -12.12371 -11.46317 -11.29709 -11.02899 -10.86027 -10.52226 -10.34064 -10.20278 -9.97448 -9.60811 -9.48557 -9.35075 -9.19458 -9.15765 -8.72947 -7.79917 -6.23518 -4.25545 0.26595 0.79127 1.15650 1.34170 2.54546 2.67774 3.19343 3.27461 3.29475 3.36179 3.38984 3.75359 3.92795 4.18013 4.24412 4.28609 4.42295 4.61664 4.74646 4.84542 4.86094 5.00184 5.10212 5.14901 5.35728 5.37566 5.47779 5.63878 5.70593 5.72846 5.74179 5.83066 5.95374 6.08808 6.20134 6.30111 6.35207 6.47870 6.88277 7.07222 7.08602 7.44626 7.57533 7.89815 8.19093 8.27256 8.76618 9.35932 10.88922 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.008460 B = 0.003487 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3308.738959 B = 8026.915559 C =11315.194237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.530 4.530 8 H 0.075 0.925 9 C -0.007 4.007 10 C 0.073 3.927 11 O -0.321 6.321 12 C 0.068 3.932 13 C -0.145 4.145 14 C -0.157 4.157 15 C 0.077 3.923 16 N -0.443 5.443 17 C 0.328 3.672 18 N -0.648 5.648 19 C 0.551 3.449 20 O -0.474 6.474 21 C -0.143 4.143 22 C -0.056 4.056 23 C -0.158 4.158 24 C 0.123 3.877 25 F -0.135 7.135 26 C -0.162 4.162 27 C -0.029 4.029 28 H 0.267 0.733 29 H 0.028 0.972 30 H 0.024 0.976 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.147 0.853 34 H 0.136 0.864 35 H 0.158 0.842 36 H 0.422 0.578 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.336 -4.328 -0.053 21.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.568 4.568 8 H 0.093 0.907 9 C -0.045 4.045 10 C -0.001 4.001 11 O -0.234 6.234 12 C 0.016 3.984 13 C -0.172 4.172 14 C -0.178 4.178 15 C -0.079 4.079 16 N -0.158 5.158 17 C 0.095 3.905 18 N -0.296 5.296 19 C 0.338 3.662 20 O -0.344 6.344 21 C -0.147 4.147 22 C -0.075 4.075 23 C -0.177 4.177 24 C 0.104 3.896 25 F -0.113 7.113 26 C -0.181 4.181 27 C -0.048 4.048 28 H 0.077 0.923 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.165 0.835 34 H 0.154 0.846 35 H 0.176 0.824 36 H 0.261 0.739 37 H 0.158 0.842 38 H 0.163 0.837 39 H 0.161 0.839 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 22.627 -4.721 -0.050 23.114 hybrid contribution -1.077 1.470 -0.019 1.822 sum 21.550 -3.251 -0.068 21.794 Atomic orbital electron populations 1.69884 1.06306 1.27341 1.49784 1.24935 0.94761 0.99224 0.94033 0.86758 0.80406 0.83325 0.78758 1.20022 1.21117 1.18803 1.20804 0.88205 0.94989 1.52775 0.90715 1.19586 0.97072 0.89930 0.97895 1.23162 0.73834 1.02323 1.00763 1.86037 1.24692 1.24791 1.87846 1.19531 0.90929 0.87047 1.00861 1.21646 1.01333 0.91356 1.02836 1.21931 0.95523 0.98309 1.02054 1.22443 0.91153 0.95555 0.98794 1.67622 1.38498 0.96290 1.13412 1.17726 0.84517 0.87042 1.01205 1.43298 1.06172 1.08004 1.72106 1.18241 0.81485 0.89097 0.77371 1.90875 1.70685 1.28336 1.44544 1.19989 0.94451 0.92869 1.07379 1.21293 1.00570 0.90811 0.94789 1.21135 0.91855 1.00459 1.04241 1.18001 0.89372 0.82288 0.99966 1.91529 1.76838 1.49528 1.93428 1.21146 1.01456 0.90642 1.04852 1.21133 0.91912 0.99007 0.92749 0.92331 0.95362 0.95803 0.92234 0.92267 0.83491 0.84574 0.82439 0.73915 0.84185 0.83738 0.83879 0.83389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.22 13.96 55.43 0.77 -25.44 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 20.35 27.47 -169.99 -4.67 15.68 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 7 C -0.53 -14.04 9.66 -34.44 -0.33 -14.38 16 8 H 0.07 2.11 7.99 -52.48 -0.42 1.69 16 9 C -0.01 -0.16 4.41 -27.88 -0.12 -0.28 16 10 C 0.07 1.33 4.70 37.16 0.17 1.50 16 11 O -0.32 -5.34 9.38 -19.66 -0.18 -5.52 16 12 C 0.07 1.04 6.72 -38.91 -0.26 0.78 16 13 C -0.15 -1.97 9.14 -39.18 -0.36 -2.32 16 14 C -0.16 -1.82 10.10 -39.44 -0.40 -2.22 16 15 C 0.08 0.98 11.17 -17.55 -0.20 0.78 16 16 N -0.44 -6.98 7.87 -12.24 -0.10 -7.08 16 17 C 0.33 5.08 7.44 -154.50 -1.15 3.93 16 18 N -0.65 -8.81 5.34 -12.19 -0.07 -8.87 16 19 C 0.55 7.51 7.73 -12.40 -0.10 7.41 16 20 O -0.47 -7.82 14.59 5.30 0.08 -7.74 16 21 C -0.14 -1.53 5.87 -104.97 -0.62 -2.14 16 22 C -0.06 -0.50 9.54 -39.20 -0.37 -0.88 16 23 C -0.16 -1.34 10.01 -39.57 -0.40 -1.73 16 24 C 0.12 1.10 7.31 -39.27 -0.29 0.81 16 25 F -0.13 -1.28 17.26 2.25 0.04 -1.24 16 26 C -0.16 -1.32 10.01 -39.57 -0.40 -1.71 16 27 C -0.03 -0.27 9.59 -39.20 -0.38 -0.65 16 28 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 30 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 31 H 0.06 1.05 7.70 -51.93 -0.40 0.65 16 32 H 0.06 1.04 7.70 -51.93 -0.40 0.64 16 33 H 0.15 1.85 6.44 -52.49 -0.34 1.52 16 34 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 35 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.42 4.91 6.07 -40.82 -0.25 4.66 16 37 H 0.14 1.06 6.40 -52.49 -0.34 0.72 16 38 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.15 1.30 7.65 -52.49 -0.40 0.90 16 LS Contribution 350.76 15.07 5.29 5.29 Total: -1.00 -32.35 350.76 -8.29 -40.64 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -4.17 Total: 3.48 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -5.28 Total: -9.19 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.61 Total: -41.39 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.11 Total: -13.27 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.67 Total: 15.68 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.35 -8.29 -40.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069702971.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.299 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds