Wall clock time and date at job start Tue Mar 31 2020 06:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86803 * 119.99695 * 2 1 4 4 H 1.48501 * 109.47357 * 274.65397 * 3 2 1 5 5 H 1.48495 * 109.46985 * 34.65828 * 3 2 1 6 6 H 1.48504 * 109.47100 * 154.65823 * 3 2 1 7 7 C 1.39892 * 120.00412 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99876 * 162.15897 * 7 2 1 9 9 C 1.41214 * 119.99850 * 342.16088 * 7 2 1 10 10 C 1.40830 * 120.18067 * 155.14116 * 9 7 2 11 11 C 1.36436 * 119.81788 * 180.02562 * 10 9 7 12 12 C 1.39313 * 120.17967 * 359.97438 * 11 10 9 13 13 O 1.35671 * 119.81577 * 179.97438 * 12 11 10 14 14 C 1.42907 * 116.99862 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.46863 * 180.02562 * 14 13 12 16 16 S 1.81000 * 109.47007 * 179.97438 * 15 14 13 17 17 C 1.76203 * 100.00131 * 180.02562 * 16 15 14 18 18 N 1.31263 * 125.80027 * 0.02592 * 17 16 15 19 19 C 1.34359 * 109.30563 * 179.73531 * 18 17 16 20 20 C 1.34392 * 108.34625 * 359.97438 * 19 18 17 21 21 N 1.36109 * 125.80163 * 179.71619 * 17 16 15 22 22 C 1.46500 * 126.50499 * 0.26815 * 21 17 16 23 23 C 1.52994 * 117.50174 * 188.61926 * 22 21 17 24 24 C 1.52994 * 60.00416 * 252.50827 * 23 22 21 25 25 C 1.39316 * 120.36752 * 0.26154 * 12 11 10 26 26 C 1.36444 * 120.18187 * 359.48141 * 25 12 11 27 27 H 0.97002 * 120.00430 * 359.97438 * 1 2 3 28 28 H 1.08007 * 120.09464 * 0.02562 * 10 9 7 29 29 H 1.07997 * 119.90966 * 179.97438 * 11 10 9 30 30 H 1.08999 * 109.46770 * 60.00747 * 14 13 12 31 31 H 1.09000 * 109.47438 * 300.00326 * 14 13 12 32 32 H 1.09007 * 109.46993 * 60.00402 * 15 14 13 33 33 H 1.09001 * 109.47762 * 300.00105 * 15 14 13 34 34 H 1.07999 * 125.82884 * 180.02562 * 19 18 17 35 35 H 1.07998 * 126.51853 * 180.02562 * 20 19 18 36 36 H 1.09005 * 115.54946 * 334.33057 * 22 21 17 37 37 H 1.09007 * 117.49885 * 0.02562 * 23 22 21 38 38 H 1.08999 * 117.50117 * 145.01568 * 23 22 21 39 39 H 1.08998 * 117.50160 * 252.51373 * 24 23 22 40 40 H 1.09000 * 117.49887 * 107.48411 * 24 23 22 41 41 H 1.07993 * 119.91028 * 179.72017 * 25 12 11 42 42 H 1.07994 * 120.09587 * 180.25876 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3918 2.1033 -1.3954 5 1 1.4928 2.6222 0.7962 6 1 3.5860 1.4139 0.5993 7 6 2.0083 -1.2114 0.0005 8 1 3.0493 -1.2340 -0.2860 9 6 1.3532 -2.4049 0.3757 10 6 1.8226 -3.6474 -0.0922 11 6 1.1837 -4.7958 0.2745 12 6 0.0702 -4.7416 1.1099 13 8 -0.5598 -5.8881 1.4695 14 6 -1.6956 -5.7625 2.3277 15 6 -2.2681 -7.1505 2.6222 16 16 -3.7062 -6.9915 3.7097 17 6 -4.1502 -8.6882 3.8798 18 7 -3.5318 -9.7033 3.3230 19 6 -4.1438 -10.8454 3.6782 20 6 -5.1765 -10.5397 4.4820 21 7 -5.1891 -9.1694 4.6158 22 6 -6.1401 -8.3793 5.4017 23 6 -7.1065 -9.1388 6.3128 24 6 -7.6208 -8.4821 5.0303 25 6 -0.4036 -3.5162 1.5733 26 6 0.2270 -2.3589 1.2202 27 1 -0.4851 0.8400 0.0004 28 1 2.6860 -3.6912 -0.7397 29 1 1.5422 -5.7494 -0.0839 30 1 -2.4548 -5.1523 1.8385 31 1 -1.3946 -5.2883 3.2618 32 1 -1.5087 -7.7604 3.1115 33 1 -2.5691 -7.6251 1.6882 34 1 -3.8547 -11.8396 3.3709 35 1 -5.8655 -11.2363 4.9363 36 1 -5.7743 -7.4131 5.7494 37 1 -7.0344 -10.2264 6.3278 38 1 -7.3765 -8.6725 7.2603 39 1 -8.2292 -7.5836 5.1339 40 1 -7.8874 -9.1375 4.2012 41 1 -1.2701 -3.4824 2.2169 42 1 -0.1389 -1.4101 1.5836 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071899332.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:19 Heat of formation + Delta-G solvation = 57.477543 kcal Electronic energy + Delta-G solvation = -23554.388665 eV Core-core repulsion = 20013.229084 eV Total energy + Delta-G solvation = -3541.159582 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.91943 -40.57202 -38.30273 -38.24675 -35.30941 -33.18451 -32.66159 -31.53902 -30.82958 -30.60480 -26.77558 -25.14655 -24.40790 -23.54796 -22.94683 -22.71469 -22.11776 -21.34912 -19.28254 -19.09149 -18.84743 -17.19949 -17.16077 -16.97419 -16.57179 -16.26307 -15.91131 -15.77224 -15.24880 -15.17737 -14.76364 -14.62641 -14.56490 -14.13429 -13.92723 -13.71929 -13.68534 -13.14685 -12.86132 -12.70523 -12.67728 -12.57278 -12.42404 -12.26331 -11.92246 -11.73928 -11.68768 -11.57946 -11.22468 -11.11321 -10.87218 -10.56836 -10.31061 -9.57164 -8.92909 -8.60343 -8.52847 -6.22709 -0.01277 0.76677 0.88510 0.92984 1.04304 1.40501 1.50039 1.56455 1.71467 1.95973 2.23500 2.66400 2.69296 2.72570 3.42085 3.66953 3.68679 3.73168 3.75159 3.78537 3.84117 4.17715 4.30842 4.32201 4.41069 4.45332 4.52030 4.64781 4.66251 4.68718 4.88448 4.90879 5.01558 5.05406 5.11108 5.15102 5.36627 5.50571 5.63961 5.65874 5.91891 5.96390 6.06234 6.22582 6.54494 6.76166 6.80300 6.95184 7.07747 8.36946 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.025140 B = 0.001937 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.476909 B =14449.309540 C =15413.843785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.033 3.967 3 Si 0.982 3.018 4 H -0.264 1.264 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.498 4.498 8 H 0.077 0.923 9 C 0.055 3.945 10 C -0.205 4.205 11 C -0.119 4.119 12 C -0.004 4.004 13 O -0.330 6.330 14 C 0.081 3.919 15 C -0.089 4.089 16 S 0.015 5.985 17 C 0.166 3.834 18 N -0.522 5.522 19 C -0.043 4.043 20 C -0.034 4.034 21 N -0.414 5.414 22 C 0.017 3.983 23 C -0.147 4.147 24 C -0.167 4.167 25 C -0.174 4.174 26 C -0.155 4.155 27 H 0.287 0.713 28 H 0.111 0.889 29 H 0.120 0.880 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.192 0.808 35 H 0.214 0.786 36 H 0.144 0.856 37 H 0.114 0.886 38 H 0.132 0.868 39 H 0.127 0.873 40 H 0.098 0.902 41 H 0.118 0.882 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.919 -15.715 13.416 26.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.181 4.181 3 Si 0.803 3.197 4 H -0.189 1.189 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.527 4.527 8 H 0.095 0.905 9 C 0.053 3.947 10 C -0.224 4.224 11 C -0.138 4.138 12 C -0.048 4.048 13 O -0.246 6.246 14 C 0.004 3.996 15 C -0.238 4.238 16 S 0.244 5.756 17 C -0.204 4.204 18 N -0.245 5.245 19 C -0.193 4.193 20 C -0.169 4.169 21 N -0.098 5.098 22 C -0.086 4.086 23 C -0.184 4.184 24 C -0.205 4.205 25 C -0.193 4.193 26 C -0.174 4.174 27 H 0.098 0.902 28 H 0.129 0.871 29 H 0.138 0.862 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.209 0.791 35 H 0.231 0.769 36 H 0.161 0.839 37 H 0.133 0.867 38 H 0.151 0.849 39 H 0.145 0.855 40 H 0.117 0.883 41 H 0.136 0.864 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.970 -14.630 13.375 26.095 hybrid contribution 0.246 -0.390 -0.293 0.546 sum -16.725 -15.020 13.082 26.009 Atomic orbital electron populations 1.69886 1.08945 1.30457 1.36418 1.26739 0.95505 1.04479 0.91344 0.85201 0.79183 0.76069 0.79291 1.18851 1.19082 1.18304 1.19718 0.98364 0.92364 1.42301 0.90527 1.17980 0.92744 0.93251 0.90731 1.20801 1.03762 0.92161 1.05711 1.19905 0.95576 0.98349 0.99928 1.18668 0.97454 0.84217 1.04481 1.85783 1.43188 1.30046 1.65566 1.22162 0.87758 0.95289 0.94401 1.23120 0.98185 0.99774 1.02684 1.84969 1.35009 0.93638 1.61940 1.25004 0.93694 1.00308 1.01406 1.70754 1.29543 0.98710 1.25473 1.22778 0.96622 0.97697 1.02179 1.23308 1.04271 0.83338 1.05955 1.45149 1.22306 1.06556 1.35748 1.22393 0.86633 0.98063 1.01503 1.23552 0.97696 1.01177 0.95991 1.23559 0.92706 1.04710 0.99553 1.20816 1.01781 0.92366 1.04289 1.20911 0.99282 0.96766 1.00475 0.90203 0.87073 0.86170 0.91661 0.91305 0.88464 0.88637 0.79076 0.76895 0.83898 0.86736 0.84944 0.85524 0.88348 0.86366 0.87421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.77 10.98 21.82 0.24 -43.53 16 2 C 0.03 1.69 5.13 85.24 0.44 2.13 16 3 Si 0.98 38.47 29.60 68.60 2.03 40.50 16 4 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 5 H -0.27 -9.91 7.11 99.48 0.71 -9.21 16 6 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 7 C -0.50 -27.14 9.04 23.40 0.21 -26.93 16 8 H 0.08 4.01 7.91 -2.91 -0.02 3.99 16 9 C 0.06 3.04 5.57 -21.28 -0.12 2.92 16 10 C -0.20 -10.32 9.74 22.48 0.22 -10.11 16 11 C -0.12 -5.59 9.92 22.11 0.22 -5.37 16 12 C 0.00 -0.20 6.71 22.79 0.15 -0.05 16 13 O -0.33 -13.52 10.12 -89.88 -0.91 -14.43 16 14 C 0.08 2.65 4.73 71.98 0.34 2.99 16 15 C -0.09 -2.55 5.56 71.98 0.40 -2.15 16 16 S 0.02 0.37 21.79 -56.49 -1.23 -0.86 16 17 C 0.17 4.26 7.96 179.70 1.43 5.70 16 18 N -0.52 -14.86 10.60 -196.47 -2.08 -16.94 16 19 C -0.04 -0.92 11.84 83.43 0.99 0.06 16 20 C -0.03 -0.54 10.89 82.89 0.90 0.36 16 21 N -0.41 -7.95 3.13 -501.37 -1.57 -9.52 16 22 C 0.02 0.22 6.61 44.99 0.30 0.52 16 23 C -0.15 -0.85 10.00 30.59 0.31 -0.54 16 24 C -0.17 -1.37 10.41 30.59 0.32 -1.05 16 25 C -0.17 -8.26 8.96 22.11 0.20 -8.06 16 26 C -0.15 -8.27 8.64 22.49 0.19 -8.08 16 27 H 0.29 13.66 8.30 -92.71 -0.77 12.89 16 28 H 0.11 5.19 8.06 -2.91 -0.02 5.17 16 29 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 30 H 0.07 2.10 7.64 -2.39 -0.02 2.08 16 31 H 0.07 2.15 7.66 -2.39 -0.02 2.13 16 32 H 0.10 2.90 8.14 -2.39 -0.02 2.89 16 33 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 34 H 0.19 3.00 8.06 -2.91 -0.02 2.98 16 35 H 0.21 1.54 7.15 -2.91 -0.02 1.52 16 36 H 0.14 1.80 7.97 -2.38 -0.02 1.78 16 37 H 0.11 0.46 6.91 -2.38 -0.02 0.44 16 38 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.12 4.90 6.27 -2.91 -0.02 4.89 16 42 H 0.11 5.94 6.18 -2.91 -0.02 5.92 16 Total: -1.00 -67.78 370.12 4.01 -63.77 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: 1.03 Total: 28.67 kcal Atomic # 6 Polarization: -54.15 SS G_CDS: 6.50 Total: -47.65 kcal Atomic # 7 Polarization: -66.58 SS G_CDS: -3.41 Total: -70.00 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.91 Total: -14.43 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Atomic # 16 Polarization: 0.37 SS G_CDS: -1.23 Total: -0.86 kcal Total: -67.78 4.01 -63.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071899332.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.248 kcal (2) G-P(sol) polarization free energy of solvation -67.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds