Wall clock time and date at job start Tue Mar 31 2020 04:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38287 * 119.93778 * 2 1 4 4 C 1.38087 * 120.08502 * 179.74172 * 3 2 1 5 5 C 1.38927 * 119.95615 * 0.51166 * 4 3 2 6 6 N 1.39843 * 120.07084 * 179.74335 * 5 4 3 7 7 C 1.46502 * 119.99564 * 18.69898 * 6 5 4 8 8 C 1.50701 * 109.46843 * 129.03264 * 7 6 5 9 9 H 1.08006 * 120.00018 * 124.75190 * 8 7 6 10 10 C 1.37873 * 120.00240 * 304.74546 * 8 7 6 11 11 N 1.31513 * 120.00315 * 168.09716 * 10 8 7 12 12 Si 1.86804 * 119.99851 * 348.10457 * 10 8 7 13 13 H 1.48502 * 109.47353 * 93.53528 * 12 10 8 14 14 H 1.48501 * 109.47134 * 213.53769 * 12 10 8 15 15 H 1.48504 * 109.47114 * 333.53595 * 12 10 8 16 16 C 1.34774 * 120.00302 * 198.70500 * 6 5 4 17 17 O 1.21565 * 119.99888 * 7.24397 * 16 6 5 18 18 C 1.47803 * 119.99848 * 187.24845 * 16 6 5 19 19 C 1.40038 * 120.56186 * 157.60633 * 18 16 6 20 20 C 1.38350 * 118.29048 * 179.71344 * 19 18 16 21 21 C 1.38358 * 119.30208 * 0.59709 * 20 19 18 22 22 N 1.31921 * 121.08322 * 359.66481 * 21 20 19 23 23 C 1.31696 * 121.87964 * 0.02562 * 22 21 20 24 24 C 1.38853 * 119.86446 * 359.46796 * 5 4 3 25 25 C 1.38251 * 119.91506 * 0.27519 * 24 5 4 26 26 Cl 1.73593 * 119.97437 * 180.02562 * 25 24 5 27 27 H 1.08995 * 109.47360 * 270.02866 * 1 2 3 28 28 H 1.09010 * 109.46720 * 30.02482 * 1 2 3 29 29 H 1.08995 * 109.47418 * 150.01744 * 1 2 3 30 30 H 1.07997 * 119.95384 * 359.97438 * 3 2 1 31 31 H 1.08001 * 120.02416 * 180.27685 * 4 3 2 32 32 H 1.08997 * 109.47288 * 9.03017 * 7 6 5 33 33 H 1.09006 * 109.47248 * 249.02897 * 7 6 5 34 34 H 0.96999 * 120.00127 * 180.02562 * 11 10 8 35 35 H 1.08008 * 120.85346 * 359.96828 * 19 18 16 36 36 H 1.08006 * 120.34694 * 180.26046 * 20 19 18 37 37 H 1.07998 * 119.45547 * 179.68039 * 21 20 19 38 38 H 1.07998 * 119.71407 * 180.02562 * 23 22 21 39 39 H 1.07992 * 120.04016 * 180.25584 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1983 0.0000 4 6 3.5780 1.2019 0.0054 5 6 4.2748 0.0000 0.0001 6 7 5.6732 0.0009 0.0001 7 6 6.4049 1.2013 0.4122 8 6 7.4312 0.8318 1.4520 9 1 8.4701 1.0842 1.2990 10 6 7.0439 0.1716 2.5988 11 7 7.9505 -0.3569 3.3914 12 14 5.2312 0.0277 3.0267 13 1 4.6976 -1.2528 2.4967 14 1 5.0668 0.0597 4.5022 15 1 4.4881 1.1620 2.4211 16 6 6.3478 -1.1025 -0.3791 17 8 5.7479 -2.0515 -0.8453 18 6 7.8170 -1.1589 -0.2280 19 6 8.4793 -2.3910 -0.1616 20 6 9.8561 -2.3889 -0.0260 21 6 10.5271 -1.1813 0.0516 22 7 9.8762 -0.0354 -0.0082 23 6 8.5671 0.0146 -0.1431 24 6 3.5799 -1.2021 0.0005 25 6 2.1974 -1.1993 0.0005 26 17 1.3271 -2.7013 0.0017 27 1 -0.3634 0.0005 1.0276 28 1 -0.3633 0.8899 -0.5143 29 1 -0.3634 -0.8901 -0.5135 30 1 1.6554 2.1326 -0.0004 31 1 4.1160 2.1384 0.0099 32 1 5.7072 1.9260 0.8317 33 1 6.9049 1.6370 -0.4529 34 1 7.6780 -0.8217 4.1980 35 1 7.9297 -3.3190 -0.2190 36 1 10.4009 -3.3201 0.0242 37 1 11.6013 -1.1768 0.1627 38 1 8.0699 0.9723 -0.1886 39 1 4.1187 -2.1380 0.0006 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072288702.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:20 Heat of formation + Delta-G solvation = 96.310637 kcal Electronic energy + Delta-G solvation = -26475.978155 eV Core-core repulsion = 22798.625702 eV Total energy + Delta-G solvation = -3677.352453 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.85889 -39.20446 -37.92984 -36.39831 -35.81963 -33.46267 -32.02136 -31.52745 -30.54081 -30.37852 -28.46645 -26.34143 -23.91549 -23.44565 -22.73925 -22.01757 -21.15762 -19.67552 -17.85539 -17.16382 -16.67328 -15.84957 -15.74615 -15.31415 -15.13185 -14.85963 -14.34464 -14.17805 -13.81286 -13.76155 -13.46104 -13.31083 -12.89609 -12.66959 -12.35457 -12.27252 -12.12103 -11.94867 -11.76881 -11.54385 -11.16258 -11.08514 -11.06949 -10.71366 -10.60564 -10.22707 -9.98818 -9.44359 -9.30550 -9.08133 -8.89238 -8.51185 -8.39171 -7.90365 -7.33457 -6.71671 -4.66622 1.30653 1.52119 1.80925 2.29065 2.34442 3.06606 3.09956 3.19017 3.35632 3.54196 3.99433 4.02029 4.56167 4.92336 5.02314 5.07948 5.21213 5.28586 5.45768 5.49276 5.56519 5.62041 5.65892 5.79436 5.81714 5.85327 5.98995 6.01957 6.08958 6.26095 6.35613 6.41150 6.52221 6.59962 6.67230 6.73913 6.84806 6.92016 7.01815 7.37830 7.56853 7.62313 7.89980 8.20593 8.68815 8.81886 8.93669 10.29874 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.016617 B = 0.005007 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.628385 B = 5590.335656 C = 6119.416618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.118 4.118 3 C -0.089 4.089 4 C -0.149 4.149 5 C 0.173 3.827 6 N -0.548 5.548 7 C 0.171 3.829 8 C -0.561 4.561 9 H 0.133 0.867 10 C 0.100 3.900 11 N -0.828 5.828 12 Si 0.863 3.137 13 H -0.265 1.265 14 H -0.288 1.288 15 H -0.248 1.248 16 C 0.581 3.419 17 O -0.545 6.545 18 C -0.215 4.215 19 C -0.005 4.005 20 C -0.251 4.251 21 C 0.147 3.853 22 N -0.542 5.542 23 C 0.213 3.787 24 C -0.136 4.136 25 C -0.015 4.015 26 Cl -0.077 7.077 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.131 0.869 31 H 0.135 0.865 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.276 0.724 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.138 0.862 38 H 0.191 0.809 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.600 1.747 -5.283 9.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.120 4.120 3 C -0.108 4.108 4 C -0.169 4.169 5 C 0.077 3.923 6 N -0.270 5.270 7 C 0.054 3.946 8 C -0.596 4.596 9 H 0.149 0.851 10 C -0.114 4.114 11 N -0.457 5.457 12 Si 0.689 3.311 13 H -0.190 1.190 14 H -0.214 1.214 15 H -0.172 1.172 16 C 0.375 3.625 17 O -0.425 6.425 18 C -0.220 4.220 19 C -0.031 4.031 20 C -0.272 4.272 21 C -0.011 4.011 22 N -0.254 5.254 23 C 0.062 3.938 24 C -0.156 4.156 25 C -0.042 4.042 26 Cl -0.049 7.049 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.149 0.851 31 H 0.153 0.847 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.156 0.844 38 H 0.206 0.794 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.363 1.816 -5.293 9.248 hybrid contribution -1.321 -1.293 0.893 2.053 sum -8.685 0.523 -4.400 9.750 Atomic orbital electron populations 1.20743 0.90760 1.02817 1.02265 1.19598 0.96362 0.91419 1.04596 1.20653 0.93208 0.96832 1.00129 1.21003 0.94319 0.97024 1.04594 1.17835 0.83916 0.93396 0.97170 1.46694 1.02780 1.16177 1.61305 1.20478 0.93743 0.83852 0.96525 1.21843 0.95924 1.40174 1.01681 0.85085 1.25063 0.98262 0.92778 0.95289 1.69929 1.34666 1.28633 1.12472 0.87055 0.84895 0.81086 0.78072 1.18982 1.21432 1.17160 1.18332 0.87813 0.81035 0.75354 1.90573 1.70028 1.36920 1.44960 1.20126 0.92307 0.95753 1.13808 1.21258 0.94049 0.96676 0.91098 1.21475 0.94584 0.99042 1.12096 1.22588 0.99388 0.88400 0.90769 1.67808 1.09662 1.28814 1.19116 1.24052 0.88652 0.99240 0.81812 1.21608 0.91949 1.00189 1.01896 1.20564 0.91919 0.86121 1.05632 1.98319 1.76536 1.33041 1.96967 0.91386 0.91579 0.91291 0.85144 0.84717 0.91638 0.91709 0.91348 0.86106 0.86358 0.84444 0.79371 0.81907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 9.61 36.01 0.35 -0.91 16 2 C -0.12 -1.78 5.89 -104.55 -0.62 -2.39 16 3 C -0.09 -1.29 9.69 -39.62 -0.38 -1.68 16 4 C -0.15 -2.45 7.93 -39.38 -0.31 -2.76 16 5 C 0.17 3.40 3.78 -83.72 -0.32 3.08 16 6 N -0.55 -11.23 1.70 -116.98 -0.20 -11.43 16 7 C 0.17 3.28 4.36 -5.19 -0.02 3.26 16 8 C -0.56 -12.74 5.65 -34.44 -0.19 -12.94 16 9 H 0.13 3.20 5.27 -52.98 -0.28 2.93 16 10 C 0.10 2.48 5.24 -17.82 -0.09 2.39 16 11 N -0.83 -21.95 13.96 55.43 0.77 -21.18 16 12 Si 0.86 19.80 24.32 -169.99 -4.13 15.67 16 13 H -0.26 -6.48 6.47 56.52 0.37 -6.11 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.25 -5.23 5.26 56.52 0.30 -4.93 16 16 C 0.58 12.87 7.15 -12.35 -0.09 12.79 16 17 O -0.54 -12.73 13.55 5.31 0.07 -12.66 16 18 C -0.21 -4.66 5.04 -104.83 -0.53 -5.19 16 19 C 0.00 -0.10 9.72 -38.87 -0.38 -0.48 16 20 C -0.25 -4.62 10.10 -39.50 -0.40 -5.02 16 21 C 0.15 2.76 11.17 -17.47 -0.20 2.56 16 22 N -0.54 -11.33 9.99 -13.13 -0.13 -11.46 16 23 C 0.21 4.47 6.47 -17.13 -0.11 4.36 16 24 C -0.14 -2.74 7.82 -39.35 -0.31 -3.05 16 25 C -0.02 -0.27 6.31 -39.52 -0.25 -0.52 16 26 Cl -0.08 -1.22 27.28 -51.86 -1.41 -2.63 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.62 8.09 -51.92 -0.42 0.20 16 29 H 0.07 0.79 6.89 -51.93 -0.36 0.43 16 30 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 31 H 0.14 1.95 6.38 -52.49 -0.34 1.61 16 32 H 0.07 1.17 5.01 -51.93 -0.26 0.91 16 33 H 0.07 1.08 6.37 -51.93 -0.33 0.75 16 34 H 0.28 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.12 2.36 7.89 -52.48 -0.41 1.95 16 36 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 37 H 0.14 2.11 8.06 -52.49 -0.42 1.69 16 38 H 0.19 3.75 2.63 -58.60 -0.15 3.60 16 39 H 0.16 3.65 5.43 -52.49 -0.28 3.37 16 LS Contribution 320.13 15.07 4.82 4.82 Total: -1.00 -28.08 320.13 -7.86 -35.94 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -3.80 Total: 9.44 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -3.85 Total: -6.50 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: 0.44 Total: -44.07 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.07 Total: -12.66 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.13 Total: 15.67 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -1.41 Total: -2.63 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.08 -7.86 -35.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072288702.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.253 kcal (2) G-P(sol) polarization free energy of solvation -28.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds