Wall clock time and date at job start Tue Mar 31 2020 06:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86802 * 120.00199 * 2 1 4 4 H 1.48497 * 109.47035 * 270.00401 * 3 2 1 5 5 H 1.48503 * 109.46825 * 29.99801 * 3 2 1 6 6 H 1.48497 * 109.47460 * 149.99896 * 3 2 1 7 7 C 1.38953 * 120.00310 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00395 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99634 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99662 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00066 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99619 * 179.97438 * 10 9 7 13 13 N 1.46502 * 109.46783 * 179.97438 * 12 10 9 14 14 C 1.39937 * 119.99889 * 180.02562 * 13 12 10 15 15 C 1.38729 * 120.09057 * 359.97438 * 14 13 12 16 16 C 1.38219 * 119.98253 * 179.97438 * 15 14 13 17 17 C 1.38264 * 120.16861 * 359.97438 * 16 15 14 18 18 C 1.38268 * 120.18174 * 0.02562 * 17 16 15 19 19 C 1.38535 * 120.01650 * 0.02562 * 18 17 16 20 20 O 1.35997 * 120.08418 * 179.97438 * 19 18 17 21 21 C 1.35872 * 117.99860 * 0.57214 * 20 19 18 22 22 C 1.38797 * 120.04606 * 269.74634 * 21 20 19 23 23 C 1.38130 * 119.98660 * 179.68064 * 22 21 20 24 24 C 1.38250 * 120.08341 * 0.61368 * 23 22 21 25 25 C 1.38486 * 120.09383 * 359.68363 * 24 23 22 26 26 F 1.35099 * 119.99716 * 180.02562 * 25 24 23 27 27 C 1.38378 * 120.00709 * 359.97438 * 25 24 23 28 28 H 0.96994 * 119.99933 * 359.97438 * 1 2 3 29 29 H 0.96997 * 120.00266 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.46902 * 59.99919 * 12 10 9 31 31 H 1.09001 * 109.47036 * 299.99469 * 12 10 9 32 32 H 0.97003 * 120.00095 * 359.97438 * 13 12 10 33 33 H 1.08000 * 120.01121 * 359.95863 * 15 14 13 34 34 H 1.07999 * 119.91863 * 180.02562 * 16 15 14 35 35 H 1.07998 * 119.91116 * 179.72435 * 17 16 15 36 36 H 1.08003 * 119.99364 * 179.97438 * 18 17 16 37 37 H 1.07996 * 120.00846 * 359.97438 * 22 21 20 38 38 H 1.08004 * 119.95811 * 180.29624 * 23 22 21 39 39 H 1.08006 * 119.95843 * 179.70399 * 24 23 22 40 40 H 1.07993 * 120.04191 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8630 0.0011 13 7 2.1959 -5.9765 0.0004 14 6 1.7294 -7.2958 0.0002 15 6 0.3659 -7.5515 0.0013 16 6 -0.0923 -8.8555 0.0005 17 6 0.8051 -9.9074 -0.0018 18 6 2.1655 -9.6604 -0.0028 19 6 2.6332 -8.3564 -0.0010 20 8 3.9710 -8.1119 -0.0016 21 6 4.8141 -9.1773 -0.0158 22 6 5.2524 -9.7327 1.1783 23 6 6.1043 -10.8199 1.1623 24 6 6.5312 -11.3482 -0.0418 25 6 6.1009 -10.7929 -1.2352 26 9 6.5189 -11.3110 -2.4108 27 6 5.2419 -9.7081 -1.2238 28 1 -0.4850 0.8400 0.0004 29 1 0.3534 -2.3907 0.0005 30 1 0.6168 -4.9209 -0.8886 31 1 0.6176 -4.9205 0.8914 32 1 3.1496 -5.7992 -0.0007 33 1 -0.3374 -6.7319 0.0029 34 1 -1.1540 -9.0534 0.0009 35 1 0.4425 -10.9246 0.0022 36 1 2.8638 -10.4843 -0.0042 37 1 4.9238 -9.3179 2.1197 38 1 6.4413 -11.2547 2.0918 39 1 7.2011 -12.1954 -0.0519 40 1 4.9056 -9.2749 -2.1541 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072312466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:35 Heat of formation + Delta-G solvation = -51.962088 kcal Electronic energy + Delta-G solvation = -26364.363284 eV Core-core repulsion = 22252.244868 eV Total energy + Delta-G solvation = -4112.118416 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.117 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.21383 -40.99508 -39.12181 -38.29677 -37.25307 -35.06493 -33.95132 -31.41743 -31.20564 -30.71258 -29.98753 -29.29561 -26.63564 -24.51629 -23.89697 -23.14793 -21.85842 -21.54719 -19.50819 -18.90669 -18.09474 -17.73126 -17.10347 -16.75639 -16.39740 -16.06794 -15.86399 -15.57006 -15.03768 -14.93575 -14.51763 -14.47965 -14.34039 -14.18300 -13.81443 -13.70731 -13.34497 -13.24710 -12.59197 -12.41693 -12.23615 -12.16623 -11.86279 -11.65321 -11.52736 -11.34846 -11.13556 -11.07670 -10.46087 -10.31588 -9.98338 -9.63042 -9.35004 -9.02725 -8.61752 -8.54117 -8.10486 -7.05577 -6.52265 -3.93843 0.62627 0.77991 1.41385 1.64819 2.82423 3.11543 3.21714 3.27040 3.34116 3.63185 3.73489 3.87760 3.97028 4.12807 4.44268 4.57923 4.71162 4.86293 4.87013 4.91358 5.00615 5.08232 5.15781 5.32022 5.49121 5.58201 5.62218 5.67146 5.73542 5.84098 5.88257 5.88538 5.97997 6.10278 6.17475 6.34658 6.40550 6.63766 6.85080 7.26433 7.45840 7.64729 7.93216 8.12499 8.45754 9.04977 9.38884 9.87662 10.64840 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.015604 B = 0.002450 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.966785 B =11425.780035 C =12652.394399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.932 3.068 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.105 0.895 9 N -0.552 5.552 10 C 0.430 3.570 11 O -0.592 6.592 12 C 0.113 3.887 13 N -0.719 5.719 14 C 0.219 3.781 15 C -0.179 4.179 16 C -0.093 4.093 17 C -0.157 4.157 18 C -0.144 4.144 19 C 0.037 3.963 20 O -0.259 6.259 21 C 0.130 3.870 22 C -0.137 4.137 23 C -0.078 4.078 24 C -0.158 4.158 25 C 0.112 3.888 26 F -0.136 7.136 27 C -0.165 4.165 28 H 0.274 0.726 29 H 0.395 0.605 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.417 0.583 33 H 0.132 0.868 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.523 -23.130 1.338 23.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.433 4.433 8 H 0.123 0.877 9 N -0.187 5.187 10 C 0.215 3.785 11 O -0.477 6.477 12 C -0.015 4.015 13 N -0.351 5.351 14 C 0.113 3.887 15 C -0.202 4.202 16 C -0.112 4.112 17 C -0.177 4.177 18 C -0.164 4.164 19 C -0.009 4.009 20 O -0.172 6.172 21 C 0.087 3.913 22 C -0.156 4.156 23 C -0.096 4.096 24 C -0.176 4.176 25 C 0.093 3.907 26 F -0.114 7.114 27 C -0.184 4.184 28 H 0.084 0.916 29 H 0.228 0.772 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.256 0.744 33 H 0.149 0.851 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.155 -22.579 1.296 22.995 hybrid contribution 0.181 0.756 -0.288 0.829 sum 4.336 -21.823 1.008 22.272 Atomic orbital electron populations 1.69604 1.05987 1.28474 1.49655 1.25305 0.95670 0.99884 0.96856 0.85821 0.79263 0.80513 0.78507 1.20269 1.20790 1.19314 1.19727 0.93465 0.82027 1.48082 0.87747 1.41794 1.09359 1.04474 1.63085 1.19735 0.88361 0.84932 0.85453 1.90520 1.13780 1.86727 1.56718 1.20958 0.92150 0.86518 1.01921 1.44459 1.10064 1.00509 1.80062 1.17231 0.91390 0.83326 0.96801 1.20570 0.92321 0.97815 1.09493 1.20830 0.99399 0.91862 0.99139 1.20602 0.92093 0.98879 1.06150 1.20945 0.96928 0.94076 1.04437 1.18462 0.80580 0.92927 1.08922 1.84292 1.13538 1.29664 1.89683 1.18273 0.92758 0.88264 0.92021 1.21561 0.99473 0.96215 0.98343 1.20901 0.95873 0.94980 0.97807 1.21232 1.02804 1.02429 0.91171 1.17423 0.97388 0.94508 0.81419 1.91525 1.88527 1.85793 1.45578 1.21428 1.00553 0.96611 0.99825 0.91636 0.77152 0.90617 0.90591 0.74416 0.85056 0.86025 0.86365 0.86016 0.84279 0.84169 0.84308 0.83794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.78 13.05 55.50 0.72 -23.05 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.64 29.55 -169.99 -5.02 15.62 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 7 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.55 -13.60 5.29 -10.96 -0.06 -13.66 16 10 C 0.43 9.93 7.85 -10.98 -0.09 9.84 16 11 O -0.59 -15.77 15.24 5.55 0.08 -15.69 16 12 C 0.11 1.98 5.40 -5.19 -0.03 1.95 16 13 N -0.72 -12.56 5.70 -59.66 -0.34 -12.90 16 14 C 0.22 3.35 6.67 -83.57 -0.56 2.79 16 15 C -0.18 -2.36 9.31 -39.41 -0.37 -2.72 16 16 C -0.09 -1.06 10.04 -39.58 -0.40 -1.46 16 17 C -0.16 -1.75 10.04 -39.56 -0.40 -2.15 16 18 C -0.14 -1.78 9.20 -39.46 -0.36 -2.14 16 19 C 0.04 0.53 6.69 -39.06 -0.26 0.27 16 20 O -0.26 -3.84 9.23 -3.84 -0.04 -3.87 16 21 C 0.13 1.58 3.96 -39.20 -0.16 1.42 16 22 C -0.14 -1.35 9.89 -39.41 -0.39 -1.74 16 23 C -0.08 -0.59 10.04 -39.62 -0.40 -0.98 16 24 C -0.16 -1.27 10.02 -39.49 -0.40 -1.67 16 25 C 0.11 1.14 7.30 -39.44 -0.29 0.85 16 26 F -0.14 -1.47 17.27 2.25 0.04 -1.43 16 27 C -0.16 -1.88 9.90 -39.36 -0.39 -2.27 16 28 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 29 H 0.39 9.19 7.90 -40.82 -0.32 8.87 16 30 H 0.08 1.19 7.95 -51.93 -0.41 0.78 16 31 H 0.08 1.19 7.95 -51.93 -0.41 0.77 16 32 H 0.42 8.11 6.80 -40.82 -0.28 7.83 16 33 H 0.13 1.58 6.74 -52.49 -0.35 1.23 16 34 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.12 1.34 6.68 -52.48 -0.35 0.99 16 37 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 38 H 0.14 0.66 8.06 -52.48 -0.42 0.23 16 39 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 40 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 355.95 15.07 5.36 5.36 Total: -1.00 -30.75 355.95 -8.14 -38.88 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -4.18 Total: 16.60 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -4.71 Total: -5.86 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 0.33 Total: -49.61 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: 0.05 Total: -19.56 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.75 -8.14 -38.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072312466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.078 kcal (2) G-P(sol) polarization free energy of solvation -30.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds