Wall clock time and date at job start Tue Mar 31 2020 05:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34891 * 117.00350 * 2 1 4 4 O 1.21626 * 119.99920 * 0.02562 * 3 2 1 5 5 C 1.46489 * 120.00268 * 179.97438 * 3 2 1 6 6 C 1.37996 * 126.26300 * 180.02562 * 5 3 2 7 7 C 1.39800 * 106.96531 * 179.97438 * 6 5 3 8 8 S 1.76202 * 126.07777 * 179.97438 * 7 6 5 9 9 O 1.42101 * 106.39976 * 336.47706 * 8 7 6 10 10 O 1.42101 * 106.40253 * 203.56394 * 8 7 6 11 11 N 1.65599 * 107.22092 * 90.02184 * 8 7 6 12 12 C 1.46505 * 119.99715 * 270.00136 * 11 8 7 13 13 C 1.46497 * 119.99944 * 90.00378 * 11 8 7 14 14 H 1.08996 * 109.47049 * 359.97438 * 13 11 8 15 15 C 1.52997 * 109.47188 * 120.00026 * 13 11 8 16 16 C 1.50706 * 109.46582 * 239.99877 * 13 11 8 17 17 H 1.07999 * 120.00196 * 359.97438 * 16 13 11 18 18 C 1.37879 * 119.99394 * 179.97438 * 16 13 11 19 19 N 1.31514 * 119.99350 * 179.97438 * 18 16 13 20 20 Si 1.86789 * 120.00458 * 0.02562 * 18 16 13 21 21 H 1.48500 * 109.47356 * 89.99481 * 20 18 16 22 22 H 1.48501 * 109.47162 * 209.99853 * 20 18 16 23 23 H 1.48503 * 109.47180 * 329.99546 * 20 18 16 24 24 C 1.35483 * 107.84491 * 0.24034 * 7 6 5 25 25 N 1.34958 * 108.98659 * 359.60266 * 24 7 6 26 26 C 1.46496 * 125.64100 * 180.15439 * 25 24 7 27 27 H 1.08996 * 109.47051 * 59.99556 * 1 2 3 28 28 H 1.09003 * 109.47495 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47186 * 299.99848 * 1 2 3 30 30 H 1.07997 * 126.51942 * 359.95869 * 6 5 3 31 31 H 1.09005 * 109.46851 * 270.00240 * 12 11 8 32 32 H 1.08997 * 109.47129 * 29.99515 * 12 11 8 33 33 H 1.08993 * 109.46804 * 150.00155 * 12 11 8 34 34 H 1.09002 * 109.47153 * 299.99573 * 15 13 11 35 35 H 1.09001 * 109.46832 * 179.97438 * 15 13 11 36 36 H 1.09004 * 109.47261 * 59.99745 * 15 13 11 37 37 H 0.97005 * 119.99656 * 180.02562 * 19 18 16 38 38 H 1.07999 * 125.50964 * 179.71976 * 24 7 6 39 39 H 1.09006 * 109.47525 * 270.29027 * 26 25 24 40 40 H 1.08999 * 109.46733 * 30.28426 * 26 25 24 41 41 H 1.08998 * 109.47329 * 150.28626 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0645 1.2018 0.0000 4 8 1.4021 2.2219 0.0005 5 6 3.5274 1.2785 0.0006 6 6 4.2843 2.4323 0.0011 7 6 5.6261 2.0400 0.0021 8 16 7.0216 3.1157 0.0025 9 8 6.5767 4.3503 -0.5423 10 8 8.1026 2.3707 -0.5414 11 7 7.4093 3.4152 1.5844 12 6 6.8062 4.5526 2.2837 13 6 8.3554 2.5428 2.2845 14 1 8.6950 1.7583 1.6083 15 6 9.5560 3.3661 2.7552 16 6 7.6759 1.9189 3.4762 17 1 6.6428 2.1494 3.6908 18 6 8.3731 1.0536 4.2924 19 7 7.7803 0.5095 5.3327 20 14 10.1600 0.6554 3.9217 21 1 11.0390 1.6278 4.6196 22 1 10.4692 -0.7184 4.3932 23 1 10.3926 0.7402 2.4575 24 6 5.6626 0.6857 -0.0032 25 7 4.3988 0.2123 0.0013 26 6 4.0170 -1.2020 0.0010 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.9110 3.4458 0.0006 31 1 7.4343 5.4339 2.1530 32 1 5.8158 4.7481 1.8726 33 1 6.7200 4.3220 3.3454 34 1 10.0474 3.8175 1.8933 35 1 10.2596 2.7171 3.2765 36 1 9.2160 4.1505 3.4316 37 1 8.2709 -0.0989 5.9072 38 1 6.5584 0.0824 -0.0082 39 1 3.9231 -1.5529 -1.0268 40 1 4.7812 -1.7847 0.5153 41 1 3.0627 -1.3209 0.5140 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074968272.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:58 Heat of formation + Delta-G solvation = -92.626913 kcal Electronic energy + Delta-G solvation = -27302.288327 eV Core-core repulsion = 23311.477714 eV Total energy + Delta-G solvation = -3990.810614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.58874 -39.97876 -36.70604 -36.59510 -36.34083 -35.26357 -33.13049 -32.52582 -30.16089 -30.00969 -27.72927 -26.86808 -25.68189 -25.04264 -23.41125 -21.52341 -20.76862 -20.10848 -18.80275 -17.73946 -17.16232 -17.06825 -16.67839 -16.43113 -15.87273 -15.50884 -15.33556 -15.23382 -14.63963 -14.12965 -13.68280 -13.46633 -13.40340 -13.14140 -12.89268 -12.80644 -12.53110 -12.46400 -12.29040 -12.16345 -12.10871 -11.86051 -11.55976 -11.43111 -11.19277 -11.04535 -10.99788 -10.92535 -10.73400 -10.48921 -10.14498 -9.60233 -9.43953 -9.16701 -8.68270 -8.52689 -8.06116 -6.18875 -4.19905 1.05848 1.14443 2.12440 2.39544 2.71094 2.97074 3.21313 3.33337 3.35279 3.73018 4.30629 4.37433 4.50905 4.62472 4.81677 4.86097 4.94941 5.02187 5.05918 5.12935 5.23554 5.36909 5.41047 5.57763 5.62290 5.85134 6.09344 6.16111 6.21531 6.28870 6.42714 6.45164 6.57752 6.67391 6.69814 6.88432 6.97728 7.30143 7.36429 7.58328 7.62747 8.41244 8.85830 9.42018 10.93458 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.013559 B = 0.004573 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.563030 B = 6121.730401 C = 7087.747726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.363 6.363 3 C 0.543 3.457 4 O -0.499 6.499 5 C -0.064 4.064 6 C 0.000 4.000 7 C -0.751 4.751 8 S 2.715 3.285 9 O -0.972 6.972 10 O -0.968 6.968 11 N -0.976 5.976 12 C 0.103 3.897 13 C 0.237 3.763 14 H 0.058 0.942 15 C -0.158 4.158 16 C -0.526 4.526 17 H 0.083 0.917 18 C 0.075 3.925 19 N -0.895 5.895 20 Si 0.875 3.125 21 H -0.276 1.276 22 H -0.296 1.296 23 H -0.260 1.260 24 C 0.170 3.830 25 N -0.411 5.411 26 C 0.060 3.940 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.164 0.836 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.036 0.964 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.265 0.735 38 H 0.192 0.808 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.245 -3.239 -9.937 13.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.281 6.281 3 C 0.388 3.612 4 O -0.387 6.387 5 C -0.172 4.172 6 C -0.025 4.025 7 C -0.843 4.843 8 S 2.804 3.196 9 O -0.962 6.962 10 O -0.959 6.959 11 N -0.815 5.815 12 C -0.043 4.043 13 C 0.133 3.867 14 H 0.076 0.924 15 C -0.218 4.218 16 C -0.565 4.565 17 H 0.101 0.899 18 C -0.128 4.128 19 N -0.532 5.532 20 Si 0.705 3.295 21 H -0.202 1.202 22 H -0.223 1.223 23 H -0.184 1.184 24 C 0.026 3.974 25 N -0.083 5.083 26 C -0.081 4.081 27 H 0.082 0.918 28 H 0.120 0.880 29 H 0.084 0.916 30 H 0.181 0.819 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.209 0.791 39 H 0.100 0.900 40 H 0.114 0.886 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.295 -3.120 -10.504 14.369 hybrid contribution 0.160 -0.831 0.518 0.992 sum -9.136 -3.951 -9.986 14.100 Atomic orbital electron populations 1.23279 0.75833 1.03696 1.02830 1.86587 1.23833 1.32695 1.84963 1.19677 0.86724 0.81730 0.73032 1.90907 1.65375 1.35697 1.46692 1.19387 0.86617 0.88035 1.23139 1.20921 0.89644 0.97338 0.94633 1.31364 1.16540 1.08529 1.27829 1.01095 0.72781 0.73017 0.72704 1.93516 1.83201 1.42319 1.77198 1.93526 1.51594 1.73639 1.77106 1.57156 1.55787 1.38093 1.30427 1.21294 0.96182 0.87006 0.99864 1.19105 0.85818 0.88012 0.93794 0.92410 1.22413 0.98642 1.00735 0.99965 1.21260 1.00122 1.26238 1.08918 0.89882 1.24894 0.97906 0.95351 0.94610 1.69887 1.37074 1.30770 1.15519 0.87045 0.85865 0.76799 0.79803 1.20236 1.22302 1.18421 1.21815 0.87581 0.93470 0.94576 1.44185 1.05787 1.06930 1.51407 1.22427 1.04089 0.77354 1.04187 0.91758 0.88010 0.91628 0.81852 0.93502 0.92511 0.89718 0.94518 0.93336 0.92205 0.92514 0.79125 0.90032 0.88634 0.88026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.57 101.05 1.07 1.37 16 2 O -0.36 -4.19 8.00 -41.01 -0.33 -4.52 16 3 C 0.54 7.98 7.92 34.05 0.27 8.25 16 4 O -0.50 -8.32 16.68 -19.36 -0.32 -8.65 16 5 C -0.06 -1.00 6.88 -81.99 -0.56 -1.57 16 6 C 0.00 0.00 10.46 -39.09 -0.41 -0.40 16 7 C -0.75 -12.95 6.18 -39.98 -0.25 -13.19 16 8 S 2.72 51.30 5.79 -107.50 -0.62 50.68 16 9 O -0.97 -19.28 16.94 -57.17 -0.97 -20.25 16 10 O -0.97 -19.92 16.41 -57.17 -0.94 -20.86 16 11 N -0.98 -19.29 3.06 -115.85 -0.35 -19.64 16 12 C 0.10 1.78 9.28 59.85 0.56 2.34 16 13 C 0.24 5.30 2.21 -69.08 -0.15 5.15 16 14 H 0.06 1.33 5.97 -51.93 -0.31 1.02 16 15 C -0.16 -3.31 8.67 37.16 0.32 -2.99 16 16 C -0.53 -13.43 8.57 -34.44 -0.30 -13.73 16 17 H 0.08 2.30 7.58 -52.49 -0.40 1.90 16 18 C 0.08 2.01 5.45 -17.82 -0.10 1.91 16 19 N -0.89 -25.53 13.96 55.43 0.77 -24.76 16 20 Si 0.88 20.45 24.37 -169.99 -4.14 16.30 16 21 H -0.28 -6.30 6.87 56.52 0.39 -5.91 16 22 H -0.30 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.26 -5.84 6.53 56.52 0.37 -5.47 16 24 C 0.17 2.62 11.09 -17.16 -0.19 2.43 16 25 N -0.41 -5.71 3.15 -120.41 -0.38 -6.09 16 26 C 0.06 0.57 10.56 59.84 0.63 1.20 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.16 2.54 8.06 -52.49 -0.42 2.12 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.88 7.79 -51.93 -0.40 0.48 16 33 H 0.08 1.54 7.02 -51.93 -0.36 1.18 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 36 H 0.06 1.18 7.67 -51.93 -0.40 0.78 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.19 2.51 8.06 -52.49 -0.42 2.09 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.10 0.93 6.15 -51.93 -0.32 0.61 16 LS Contribution 353.55 15.07 5.33 5.33 Total: -1.00 -33.95 353.55 -6.41 -40.36 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -5.35 Total: 1.33 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 0.89 Total: -9.23 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: 0.04 Total: -50.50 kcal Atomic # 8 Polarization: -51.72 SS G_CDS: -2.56 Total: -54.28 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.14 Total: 16.30 kcal Atomic # 16 Polarization: 51.30 SS G_CDS: -0.62 Total: 50.68 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.95 -6.41 -40.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074968272.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.264 kcal (2) G-P(sol) polarization free energy of solvation -33.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds