Wall clock time and date at job start Tue Mar 31 2020 05:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34893 * 116.99611 * 2 1 4 4 O 1.21623 * 120.00408 * 359.97438 * 3 2 1 5 5 C 1.46495 * 119.99761 * 179.97438 * 3 2 1 6 6 C 1.37996 * 126.25835 * 180.02562 * 5 3 2 7 7 C 1.39804 * 106.96577 * 179.97438 * 6 5 3 8 8 S 1.76195 * 126.07851 * 179.97438 * 7 6 5 9 9 O 1.42096 * 106.40349 * 336.48221 * 8 7 6 10 10 O 1.42108 * 106.40295 * 203.56304 * 8 7 6 11 11 N 1.65606 * 107.21884 * 90.02515 * 8 7 6 12 12 C 1.46497 * 119.99739 * 269.99846 * 11 8 7 13 13 C 1.46497 * 120.00188 * 89.99923 * 11 8 7 14 14 H 1.09007 * 109.47078 * 359.97438 * 13 11 8 15 15 C 1.53000 * 109.47021 * 240.00233 * 13 11 8 16 16 C 1.50694 * 109.47115 * 120.00014 * 13 11 8 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 13 11 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 11 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.35491 * 107.84099 * 0.24163 * 7 6 5 25 25 N 1.34958 * 108.98481 * 359.60093 * 24 7 6 26 26 C 1.46499 * 125.63672 * 180.15390 * 25 24 7 27 27 H 1.08999 * 109.47123 * 60.00375 * 1 2 3 28 28 H 1.09004 * 109.46918 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47517 * 299.99832 * 1 2 3 30 30 H 1.07998 * 126.52205 * 359.95997 * 6 5 3 31 31 H 1.09001 * 109.46905 * 270.00036 * 12 11 8 32 32 H 1.09005 * 109.47144 * 29.99977 * 12 11 8 33 33 H 1.08993 * 109.47302 * 150.00165 * 12 11 8 34 34 H 1.08998 * 109.47089 * 59.99825 * 15 13 11 35 35 H 1.08995 * 109.47131 * 179.97438 * 15 13 11 36 36 H 1.09002 * 109.47106 * 299.99878 * 15 13 11 37 37 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 38 38 H 1.07997 * 125.50693 * 179.72416 * 24 7 6 39 39 H 1.08990 * 109.47757 * 270.29001 * 26 25 24 40 40 H 1.09004 * 109.46769 * 30.29083 * 26 25 24 41 41 H 1.09004 * 109.46971 * 150.28068 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2019 0.0000 4 8 1.4019 2.2220 -0.0005 5 6 3.5273 1.2787 0.0006 6 6 4.2840 2.4326 0.0011 7 6 5.6260 2.0404 0.0021 8 16 7.0214 3.1162 0.0025 9 8 6.5764 4.3509 -0.5422 10 8 8.1025 2.3714 -0.5414 11 7 7.4090 3.4157 1.5845 12 6 6.8059 4.5529 2.2838 13 6 8.3551 2.5434 2.2846 14 1 8.6948 1.7588 1.6083 15 6 7.6653 1.9097 3.4944 16 6 9.5376 3.3544 2.7483 17 1 9.5804 4.4136 2.5418 18 6 10.5654 2.7439 3.4353 19 7 10.5136 1.4540 3.6864 20 14 12.0315 3.7491 4.0094 21 1 12.9905 2.8649 4.7192 22 1 12.7005 4.3640 2.8350 23 1 11.5687 4.8175 4.9311 24 6 5.6626 0.6860 -0.0033 25 7 4.3988 0.2126 0.0013 26 6 4.0171 -1.2018 0.0009 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 3.9108 3.4460 0.0006 31 1 7.4338 5.4342 2.1532 32 1 5.8154 4.7484 1.8728 33 1 6.7196 4.3224 3.3455 34 1 6.8100 1.3231 3.1590 35 1 8.3691 1.2603 4.0150 36 1 7.3253 2.6939 4.1708 37 1 11.2369 1.0245 4.1694 38 1 6.5584 0.0828 -0.0082 39 1 3.9233 -1.5526 -1.0267 40 1 4.7814 -1.7844 0.5154 41 1 3.0629 -1.3207 0.5142 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074968273.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:02 Heat of formation + Delta-G solvation = -99.194181 kcal Electronic energy + Delta-G solvation = -27028.796828 eV Core-core repulsion = 23037.701437 eV Total energy + Delta-G solvation = -3991.095392 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.71070 -40.09363 -36.72331 -36.52287 -36.09826 -35.10052 -33.24720 -32.54052 -30.27334 -29.04689 -27.83079 -26.98198 -25.52140 -25.09957 -23.51233 -21.59699 -20.57962 -20.21122 -18.84438 -17.69496 -17.26187 -16.84262 -16.68019 -16.32192 -15.91034 -15.45985 -15.40059 -15.08229 -14.46639 -14.24049 -13.59164 -13.56909 -13.44047 -13.10558 -12.92716 -12.80878 -12.61173 -12.55987 -12.27710 -11.91592 -11.63896 -11.38733 -11.29702 -11.16465 -11.15368 -11.04425 -10.91985 -10.77170 -10.71163 -10.40939 -10.25123 -9.95914 -9.30503 -9.21046 -8.65591 -8.42761 -7.89935 -6.05304 -4.10984 1.01657 1.13996 2.01935 2.27499 2.59057 2.85094 3.33111 3.36845 3.40920 3.88620 4.38365 4.41676 4.49509 4.54365 4.72933 4.76048 4.84879 4.90588 5.01399 5.13641 5.23912 5.26539 5.36825 5.47613 5.71128 5.81039 5.98224 6.24602 6.33337 6.44653 6.55748 6.68794 6.80117 6.83846 6.85719 7.04342 7.46888 7.49194 7.66948 7.81660 8.06297 8.30535 8.91256 9.54541 11.00451 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.020755 B = 0.003467 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.722804 B = 8074.959401 C = 8455.945283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.364 6.364 3 C 0.542 3.458 4 O -0.497 6.497 5 C -0.066 4.066 6 C 0.000 4.000 7 C -0.754 4.754 8 S 2.709 3.291 9 O -0.974 6.974 10 O -0.958 6.958 11 N -0.981 5.981 12 C 0.109 3.891 13 C 0.268 3.732 14 H 0.061 0.939 15 C -0.149 4.149 16 C -0.518 4.518 17 H 0.063 0.937 18 C 0.064 3.936 19 N -0.892 5.892 20 Si 0.898 3.102 21 H -0.287 1.287 22 H -0.276 1.276 23 H -0.277 1.277 24 C 0.160 3.840 25 N -0.413 5.413 26 C 0.060 3.940 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.165 0.835 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.009 0.991 35 H 0.092 0.908 36 H 0.034 0.966 37 H 0.263 0.737 38 H 0.193 0.807 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.877 -7.328 -5.081 19.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.281 6.281 3 C 0.387 3.613 4 O -0.385 6.385 5 C -0.174 4.174 6 C -0.026 4.026 7 C -0.844 4.844 8 S 2.797 3.203 9 O -0.965 6.965 10 O -0.948 6.948 11 N -0.822 5.822 12 C -0.038 4.038 13 C 0.165 3.835 14 H 0.078 0.922 15 C -0.209 4.209 16 C -0.557 4.557 17 H 0.081 0.919 18 C -0.138 4.138 19 N -0.531 5.531 20 Si 0.726 3.274 21 H -0.213 1.213 22 H -0.201 1.201 23 H -0.203 1.203 24 C 0.016 3.984 25 N -0.086 5.086 26 C -0.081 4.081 27 H 0.083 0.917 28 H 0.120 0.880 29 H 0.084 0.916 30 H 0.182 0.818 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.028 0.972 35 H 0.111 0.889 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.210 0.790 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.843 -7.250 -5.720 19.209 hybrid contribution 0.010 -0.034 0.757 0.758 sum -16.833 -7.285 -4.962 19.001 Atomic orbital electron populations 1.23287 0.75752 1.03737 1.02879 1.86584 1.23894 1.32682 1.84983 1.19683 0.86712 0.81753 0.73122 1.90917 1.65349 1.35693 1.46550 1.19422 0.86620 0.88060 1.23261 1.20981 0.89692 0.97385 0.94538 1.31719 1.16982 1.08671 1.27015 1.01403 0.72614 0.73129 0.73151 1.93501 1.83265 1.42258 1.77441 1.93557 1.50810 1.73498 1.76963 1.57413 1.55704 1.38198 1.30842 1.21177 0.95736 0.88370 0.98481 1.18747 0.85288 0.88790 0.90679 0.92167 1.22133 0.98478 1.00049 1.00210 1.21316 1.03001 0.95675 1.35741 0.91862 1.24894 0.98167 0.95021 0.95761 1.69844 1.32997 1.09198 1.41082 0.86557 0.82112 0.79862 0.78877 1.21305 1.20113 1.20258 1.21897 0.87545 0.93590 0.95357 1.44226 1.05812 1.06906 1.51626 1.22428 1.03895 0.77333 1.04437 0.91691 0.87968 0.91642 0.81765 0.93071 0.93012 0.91012 0.97184 0.88905 0.94692 0.92721 0.78974 0.89909 0.88717 0.88064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.57 101.05 1.07 1.32 16 2 O -0.36 -3.68 8.00 -41.02 -0.33 -4.01 16 3 C 0.54 7.22 7.92 34.06 0.27 7.49 16 4 O -0.50 -7.72 16.68 -19.36 -0.32 -8.04 16 5 C -0.07 -0.93 6.88 -81.99 -0.56 -1.50 16 6 C 0.00 -0.01 10.46 -39.08 -0.41 -0.42 16 7 C -0.75 -12.37 6.18 -39.98 -0.25 -12.61 16 8 S 2.71 53.36 5.79 -107.50 -0.62 52.74 16 9 O -0.97 -20.42 16.94 -57.17 -0.97 -21.39 16 10 O -0.96 -21.41 16.41 -57.17 -0.94 -22.35 16 11 N -0.98 -20.28 3.06 -115.86 -0.35 -20.63 16 12 C 0.11 1.96 9.53 59.85 0.57 2.53 16 13 C 0.27 6.38 2.62 -69.09 -0.18 6.20 16 14 H 0.06 1.55 6.91 -51.92 -0.36 1.19 16 15 C -0.15 -3.31 8.95 37.16 0.33 -2.97 16 16 C -0.52 -13.71 8.37 -34.44 -0.29 -14.00 16 17 H 0.06 1.67 7.65 -52.49 -0.40 1.27 16 18 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 19 N -0.89 -24.25 11.32 55.43 0.63 -23.62 16 20 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 C 0.16 2.24 11.09 -17.16 -0.19 2.05 16 25 N -0.41 -5.06 3.15 -120.41 -0.38 -5.44 16 26 C 0.06 0.46 10.56 59.85 0.63 1.09 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.16 2.42 8.06 -52.49 -0.42 2.00 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.80 7.79 -51.93 -0.40 0.39 16 33 H 0.07 1.25 6.43 -51.93 -0.33 0.91 16 34 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.09 2.27 6.07 -51.93 -0.32 1.95 16 36 H 0.03 0.74 6.66 -51.93 -0.35 0.39 16 37 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 38 H 0.19 2.29 8.06 -52.49 -0.42 1.87 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.10 0.73 6.15 -51.93 -0.32 0.41 16 LS Contribution 359.69 15.07 5.42 5.42 Total: -1.00 -34.08 359.69 -7.41 -41.48 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -5.42 Total: -0.81 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 0.90 Total: -9.22 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -0.11 Total: -49.70 kcal Atomic # 8 Polarization: -53.24 SS G_CDS: -2.56 Total: -55.79 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 53.36 SS G_CDS: -0.62 Total: 52.74 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.08 -7.41 -41.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074968273.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.710 kcal (2) G-P(sol) polarization free energy of solvation -34.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds