Wall clock time and date at job start Tue Mar 31 2020 05:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34893 * 116.99611 * 2 1 4 4 O 1.21623 * 120.00408 * 359.97438 * 3 2 1 5 5 C 1.46495 * 119.99761 * 179.97438 * 3 2 1 6 6 C 1.37996 * 126.25835 * 180.02562 * 5 3 2 7 7 C 1.39804 * 106.96577 * 179.97438 * 6 5 3 8 8 S 1.76195 * 126.07851 * 179.97438 * 7 6 5 9 9 O 1.42096 * 106.40349 * 336.48221 * 8 7 6 10 10 O 1.42108 * 106.40295 * 203.56304 * 8 7 6 11 11 N 1.65606 * 107.21884 * 90.02515 * 8 7 6 12 12 C 1.46497 * 119.99739 * 269.99846 * 11 8 7 13 13 C 1.46497 * 120.00188 * 89.99923 * 11 8 7 14 14 H 1.09007 * 109.47078 * 359.97438 * 13 11 8 15 15 C 1.53000 * 109.47021 * 240.00233 * 13 11 8 16 16 C 1.50694 * 109.47115 * 120.00014 * 13 11 8 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 13 11 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 11 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.35491 * 107.84099 * 0.24163 * 7 6 5 25 25 N 1.34958 * 108.98481 * 359.60093 * 24 7 6 26 26 C 1.46499 * 125.63672 * 180.15390 * 25 24 7 27 27 H 1.08999 * 109.47123 * 60.00375 * 1 2 3 28 28 H 1.09004 * 109.46918 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47517 * 299.99832 * 1 2 3 30 30 H 1.07998 * 126.52205 * 359.95997 * 6 5 3 31 31 H 1.09001 * 109.46905 * 270.00036 * 12 11 8 32 32 H 1.09005 * 109.47144 * 29.99977 * 12 11 8 33 33 H 1.08993 * 109.47302 * 150.00165 * 12 11 8 34 34 H 1.08998 * 109.47089 * 59.99825 * 15 13 11 35 35 H 1.08995 * 109.47131 * 179.97438 * 15 13 11 36 36 H 1.09002 * 109.47106 * 299.99878 * 15 13 11 37 37 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 38 38 H 1.07997 * 125.50693 * 179.72416 * 24 7 6 39 39 H 1.08990 * 109.47757 * 270.29001 * 26 25 24 40 40 H 1.09004 * 109.46769 * 30.29083 * 26 25 24 41 41 H 1.09004 * 109.46971 * 150.28068 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2019 0.0000 4 8 1.4019 2.2220 -0.0005 5 6 3.5273 1.2787 0.0006 6 6 4.2840 2.4326 0.0011 7 6 5.6260 2.0404 0.0021 8 16 7.0214 3.1162 0.0025 9 8 6.5764 4.3509 -0.5422 10 8 8.1025 2.3714 -0.5414 11 7 7.4090 3.4157 1.5845 12 6 6.8059 4.5529 2.2838 13 6 8.3551 2.5434 2.2846 14 1 8.6948 1.7588 1.6083 15 6 7.6653 1.9097 3.4944 16 6 9.5376 3.3544 2.7483 17 1 9.5804 4.4136 2.5418 18 6 10.5654 2.7439 3.4353 19 7 10.5136 1.4540 3.6864 20 14 12.0315 3.7491 4.0094 21 1 12.9905 2.8649 4.7192 22 1 12.7005 4.3640 2.8350 23 1 11.5687 4.8175 4.9311 24 6 5.6626 0.6860 -0.0033 25 7 4.3988 0.2126 0.0013 26 6 4.0171 -1.2018 0.0009 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 3.9108 3.4460 0.0006 31 1 7.4338 5.4342 2.1532 32 1 5.8154 4.7484 1.8728 33 1 6.7196 4.3224 3.3455 34 1 6.8100 1.3231 3.1590 35 1 8.3691 1.2603 4.0150 36 1 7.3253 2.6939 4.1708 37 1 11.2369 1.0245 4.1694 38 1 6.5584 0.0828 -0.0082 39 1 3.9233 -1.5526 -1.0267 40 1 4.7814 -1.7844 0.5154 41 1 3.0629 -1.3207 0.5142 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074968273.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:01 Heat of formation + Delta-G solvation = -122.305046 kcal Electronic energy + Delta-G solvation = -27029.798991 eV Core-core repulsion = 23037.701437 eV Total energy + Delta-G solvation = -3992.097554 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.76092 -41.05294 -38.18686 -37.81593 -37.65610 -36.75428 -34.46769 -34.20822 -31.31718 -30.84081 -28.53619 -27.82737 -27.22402 -26.93337 -24.50285 -22.87564 -22.25576 -21.20169 -20.00227 -19.20455 -18.48311 -18.19348 -18.10941 -17.65861 -17.07574 -16.80409 -16.61789 -16.29525 -16.20164 -15.20087 -15.10920 -14.73914 -14.53992 -14.48775 -14.38390 -13.89863 -13.65708 -13.43936 -13.38544 -13.26520 -13.09623 -13.05870 -12.95955 -12.92912 -12.72891 -12.52795 -12.34322 -12.16525 -12.09411 -11.94287 -11.91748 -11.76891 -11.09258 -10.45033 -10.37852 -9.77519 -9.57589 -8.06482 -6.18482 -0.38793 -0.03793 0.81334 1.35458 1.47312 1.48907 1.55721 1.71010 1.78175 2.35261 2.50058 2.99664 3.22112 3.33233 3.53542 3.85413 3.90250 4.15781 4.19217 4.27508 4.31527 4.38961 4.43737 4.61720 4.66858 4.75526 4.77544 4.90088 5.05481 5.08771 5.09307 5.19510 5.19957 5.23731 5.46307 5.67382 5.80686 5.88108 5.94376 6.19335 6.36942 6.49788 6.88103 7.49660 8.97435 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.020755 B = 0.003467 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.722804 B = 8074.959401 C = 8455.945283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.547 3.453 4 O -0.525 6.525 5 C -0.067 4.067 6 C -0.020 4.020 7 C -0.766 4.766 8 S 2.721 3.279 9 O -0.994 6.994 10 O -0.992 6.992 11 N -0.990 5.990 12 C 0.102 3.898 13 C 0.272 3.728 14 H 0.037 0.963 15 C -0.136 4.136 16 C -0.538 4.538 17 H 0.055 0.945 18 C 0.021 3.979 19 N -0.911 5.911 20 Si 0.951 3.049 21 H -0.281 1.281 22 H -0.279 1.279 23 H -0.270 1.270 24 C 0.162 3.838 25 N -0.399 5.399 26 C 0.048 3.952 27 H 0.064 0.936 28 H 0.140 0.860 29 H 0.063 0.937 30 H 0.164 0.836 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.039 0.961 37 H 0.264 0.736 38 H 0.212 0.788 39 H 0.104 0.896 40 H 0.117 0.883 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.406 -8.842 -4.842 20.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.393 3.607 4 O -0.415 6.415 5 C -0.175 4.175 6 C -0.046 4.046 7 C -0.861 4.861 8 S 2.814 3.186 9 O -0.984 6.984 10 O -0.983 6.983 11 N -0.829 5.829 12 C -0.044 4.044 13 C 0.168 3.832 14 H 0.055 0.945 15 C -0.196 4.196 16 C -0.578 4.578 17 H 0.073 0.927 18 C -0.179 4.179 19 N -0.551 5.551 20 Si 0.777 3.223 21 H -0.207 1.207 22 H -0.205 1.205 23 H -0.195 1.195 24 C 0.016 3.984 25 N -0.070 5.070 26 C -0.090 4.090 27 H 0.083 0.917 28 H 0.158 0.842 29 H 0.082 0.918 30 H 0.181 0.819 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.229 0.771 39 H 0.122 0.878 40 H 0.136 0.864 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -18.362 -8.757 -5.474 21.067 hybrid contribution 0.325 0.332 0.623 0.777 sum -18.037 -8.425 -4.852 20.490 Atomic orbital electron populations 1.23657 0.73666 1.06233 1.02824 1.86577 1.25767 1.30589 1.84132 1.19566 0.86344 0.82267 0.72508 1.90907 1.65830 1.36858 1.47867 1.19523 0.87430 0.88189 1.22384 1.21064 0.89603 0.98236 0.95693 1.31011 1.15681 1.09297 1.30093 1.00590 0.72742 0.72864 0.72439 1.93466 1.83587 1.43719 1.77661 1.93505 1.53114 1.74036 1.77606 1.57302 1.55953 1.38754 1.30873 1.21351 0.96734 0.87379 0.98892 1.18467 0.85517 0.88389 0.90824 0.94521 1.21931 0.98526 0.99862 0.99259 1.21640 1.04478 0.95691 1.36006 0.92655 1.25557 1.00357 0.95984 0.95981 1.69943 1.33597 1.10109 1.41411 0.85720 0.79410 0.78809 0.78333 1.20676 1.20497 1.19470 1.22158 0.88861 0.92941 0.94462 1.44488 1.04762 1.08350 1.49429 1.22860 1.05088 0.74709 1.06347 0.91748 0.84179 0.91800 0.81879 0.93623 0.90519 0.90407 0.94749 0.91171 0.94237 0.92647 0.77140 0.87807 0.86436 0.87216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.57 113.37 1.20 1.51 16 2 O -0.35 -6.14 8.00 -58.07 -0.46 -6.61 16 3 C 0.55 13.59 7.92 69.97 0.55 14.15 16 4 O -0.52 -15.77 16.68 19.43 0.32 -15.44 16 5 C -0.07 -1.77 6.88 40.32 0.28 -1.49 16 6 C -0.02 -0.63 10.46 22.59 0.24 -0.39 16 7 C -0.77 -24.73 6.18 22.01 0.14 -24.59 16 8 S 2.72 108.66 5.79 -56.49 -0.33 108.33 16 9 O -0.99 -42.34 16.94 -128.00 -2.17 -44.51 16 10 O -0.99 -45.42 16.41 -128.00 -2.10 -47.52 16 11 N -0.99 -41.19 3.06 -520.46 -1.59 -42.78 16 12 C 0.10 3.66 9.53 127.77 1.22 4.88 16 13 C 0.27 13.08 2.62 44.24 0.12 13.20 16 14 H 0.04 1.94 6.91 -2.38 -0.02 1.92 16 15 C -0.14 -5.98 8.95 71.98 0.64 -5.33 16 16 C -0.54 -28.88 8.37 25.60 0.21 -28.67 16 17 H 0.06 2.97 7.65 -2.91 -0.02 2.95 16 18 C 0.02 1.13 5.30 84.66 0.45 1.58 16 19 N -0.91 -49.78 11.32 21.45 0.24 -49.54 16 20 Si 0.95 42.88 29.54 68.60 2.03 44.91 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 C 0.16 4.29 11.09 83.58 0.93 5.21 16 25 N -0.40 -8.78 3.15 -534.85 -1.68 -10.47 16 26 C 0.05 0.57 10.56 127.77 1.35 1.92 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.14 0.49 8.14 -2.38 -0.02 0.47 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 30 H 0.16 4.85 8.06 -2.91 -0.02 4.83 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.08 2.33 7.79 -2.38 -0.02 2.31 16 33 H 0.08 2.67 6.43 -2.39 -0.02 2.65 16 34 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.07 3.42 6.07 -2.39 -0.01 3.41 16 36 H 0.04 1.65 6.66 -2.39 -0.02 1.63 16 37 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 38 H 0.21 4.67 8.06 -2.91 -0.02 4.64 16 39 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.12 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.11 1.15 6.15 -2.39 -0.01 1.14 16 Total: -1.00 -73.87 359.69 2.62 -71.24 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.05 Total: 10.41 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: 7.32 Total: -18.03 kcal Atomic # 7 Polarization: -99.75 SS G_CDS: -3.03 Total: -102.79 kcal Atomic # 8 Polarization: -109.67 SS G_CDS: -4.41 Total: -114.08 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: 108.66 SS G_CDS: -0.33 Total: 108.33 kcal Total: -73.87 2.62 -71.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074968273.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.062 kcal (2) G-P(sol) polarization free energy of solvation -73.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds