Wall clock time and date at job start Tue Mar 31 2020 06:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34716 * 117.00082 * 2 1 4 4 O 1.21470 * 120.00104 * 0.02562 * 3 2 1 5 5 C 1.47751 * 119.99805 * 180.02562 * 3 2 1 6 6 N 1.34586 * 126.05302 * 0.02562 * 5 3 2 7 7 C 1.30852 * 107.26814 * 179.97438 * 6 5 3 8 8 N 1.34606 * 107.63630 * 0.02562 * 7 6 5 9 9 C 1.46505 * 125.74525 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47295 * 124.99526 * 9 8 7 11 11 O 1.21280 * 119.99800 * 354.92325 * 10 9 8 12 12 N 1.34775 * 119.99836 * 174.91944 * 10 9 8 13 13 C 1.37139 * 120.00127 * 6.00508 * 12 10 9 14 14 H 1.08007 * 119.99710 * 53.62633 * 13 12 10 15 15 C 1.38882 * 120.00389 * 233.61700 * 13 12 10 16 16 N 1.31427 * 120.00031 * 5.47168 * 15 13 12 17 17 Si 1.86800 * 120.00356 * 185.46929 * 15 13 12 18 18 H 1.48499 * 109.46914 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46923 * 120.00164 * 17 15 13 20 20 H 1.48500 * 109.46872 * 240.00179 * 17 15 13 21 21 C 1.39794 * 119.99832 * 185.99916 * 12 10 9 22 22 C 1.38954 * 120.07662 * 8.29206 * 21 12 10 23 23 C 1.38085 * 119.92175 * 179.78677 * 22 21 12 24 24 C 1.38313 * 120.07648 * 0.46319 * 23 22 21 25 25 C 1.38310 * 120.15723 * 359.78826 * 24 23 22 26 26 C 1.38090 * 120.07320 * 359.97438 * 25 24 23 27 27 N 1.28845 * 108.51132 * 359.97438 * 8 7 6 28 28 H 1.09003 * 109.46899 * 299.99871 * 1 2 3 29 29 H 1.08999 * 109.47192 * 59.99884 * 1 2 3 30 30 H 1.08996 * 109.47401 * 180.02562 * 1 2 3 31 31 H 1.08001 * 126.18005 * 180.02562 * 7 6 5 32 32 H 1.09004 * 109.46586 * 244.99587 * 9 8 7 33 33 H 1.09001 * 109.47009 * 4.99044 * 9 8 7 34 34 H 0.96995 * 120.00570 * 184.99940 * 16 15 13 35 35 H 1.08003 * 120.04410 * 359.97438 * 22 21 12 36 36 H 1.07997 * 119.96176 * 180.25340 * 23 22 21 37 37 H 1.07998 * 119.92356 * 179.76849 * 24 23 22 38 38 H 1.07990 * 119.96678 * 179.97438 * 25 24 23 39 39 H 1.08002 * 120.03835 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2191 0.0005 5 6 3.5391 1.2776 -0.0006 6 7 4.3870 0.2324 -0.0016 7 6 5.6021 0.7180 -0.0024 8 7 5.5048 2.0605 -0.0012 9 6 6.6289 3.0001 -0.0021 10 6 6.4902 3.9483 -1.1651 11 8 5.5976 3.7926 -1.9713 12 7 7.3579 4.9694 -1.3092 13 6 8.4382 5.0747 -0.4710 14 1 9.1133 4.2400 -0.3528 15 6 8.6643 6.2547 0.2257 16 7 7.7869 7.2314 0.1662 17 14 10.2154 6.4537 1.2474 18 1 11.0348 5.2192 1.1488 19 1 10.9981 7.6088 0.7390 20 1 9.8465 6.6916 2.6660 21 6 7.1568 5.9212 -2.3131 22 6 5.9788 5.9177 -3.0501 23 6 5.7816 6.8620 -4.0381 24 6 6.7590 7.8047 -4.3009 25 6 7.9350 7.8079 -3.5729 26 6 8.1368 6.8695 -2.5801 27 7 4.2566 2.3802 -0.0004 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 6.5176 0.1450 -0.0037 32 1 6.6303 3.5656 0.9298 33 1 7.5641 2.4476 -0.0932 34 1 7.9776 8.0815 0.5926 35 1 5.2170 5.1792 -2.8484 36 1 4.8645 6.8625 -4.6085 37 1 6.6038 8.5398 -5.0767 38 1 8.6962 8.5450 -3.7810 39 1 9.0554 6.8723 -2.0122 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076608334.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:17 Heat of formation + Delta-G solvation = 34.574551 kcal Electronic energy + Delta-G solvation = -27665.182211 eV Core-core repulsion = 23576.736266 eV Total energy + Delta-G solvation = -4088.445944 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.30538 -40.14760 -39.84543 -37.42371 -36.40495 -35.23431 -34.23326 -32.11952 -31.66264 -29.83982 -29.66667 -28.43384 -27.18807 -25.40454 -24.26406 -22.60765 -21.76136 -21.32691 -20.71032 -19.66846 -18.35091 -17.90067 -17.06206 -16.96520 -16.39338 -16.02587 -15.77336 -15.58788 -15.29459 -14.82817 -14.56492 -14.45919 -13.69531 -13.56134 -13.25828 -13.12931 -12.92560 -12.70554 -12.39524 -12.17942 -11.95564 -11.75854 -11.52810 -11.44724 -11.25656 -10.93290 -10.82977 -10.75124 -10.59049 -10.31069 -10.28969 -10.14436 -9.53162 -9.46162 -8.97798 -8.47875 -7.89657 -7.07666 -6.49718 -4.76281 1.38991 2.02277 2.14844 2.26311 2.46172 2.75886 2.90111 3.00126 3.03719 3.29810 3.43067 3.77784 4.13924 4.22408 4.56171 4.67130 4.82787 5.01703 5.03077 5.11330 5.31369 5.39432 5.43059 5.56342 5.79580 5.90879 5.99271 6.07427 6.22477 6.43000 6.56262 6.58390 6.64018 6.74075 6.98300 7.05603 7.37763 7.49523 7.51902 7.60159 7.66806 7.87312 8.22254 8.24181 8.62841 8.93655 9.34563 10.29467 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.013607 B = 0.003648 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.306240 B = 7672.917194 C = 9050.494959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.338 6.338 3 C 0.574 3.426 4 O -0.483 6.483 5 C 0.133 3.867 6 N -0.470 5.470 7 C 0.188 3.812 8 N -0.272 5.272 9 C 0.116 3.884 10 C 0.477 3.523 11 O -0.543 6.543 12 N -0.375 5.375 13 C -0.389 4.389 14 H 0.098 0.902 15 C 0.061 3.939 16 N -0.830 5.830 17 Si 0.917 3.083 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.276 1.276 21 C 0.192 3.808 22 C -0.177 4.177 23 C -0.117 4.117 24 C -0.170 4.170 25 C -0.120 4.120 26 C -0.104 4.104 27 N -0.201 5.201 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.228 0.772 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.278 0.722 35 H 0.164 0.836 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.158 -8.996 1.103 9.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.253 6.253 3 C 0.413 3.587 4 O -0.366 6.366 5 C -0.142 4.142 6 N -0.196 5.196 7 C -0.107 4.107 8 N -0.069 5.069 9 C -0.007 4.007 10 C 0.266 3.734 11 O -0.425 6.425 12 N -0.083 5.083 13 C -0.515 4.515 14 H 0.115 0.885 15 C -0.152 4.152 16 N -0.460 5.460 17 Si 0.742 3.258 18 H -0.187 1.187 19 H -0.200 1.200 20 H -0.201 1.201 21 C 0.096 3.904 22 C -0.197 4.197 23 C -0.136 4.136 24 C -0.189 4.189 25 C -0.139 4.139 26 C -0.124 4.124 27 N -0.044 5.044 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.245 0.755 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.088 0.912 35 H 0.181 0.819 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.340 -8.363 0.905 8.731 hybrid contribution 1.145 0.607 0.580 1.420 sum -1.196 -7.755 1.484 7.986 Atomic orbital electron populations 1.23344 0.75666 1.03870 1.02807 1.86608 1.23332 1.31187 1.84161 1.18765 0.84984 0.81795 0.73140 1.90903 1.65226 1.35973 1.44531 1.22049 0.93305 0.86151 1.12719 1.71285 0.98927 1.30044 1.19343 1.26520 0.98966 0.82597 1.02596 1.47264 1.04881 1.07512 1.47229 1.21910 0.84763 0.91369 1.02694 1.20390 0.82186 0.84406 0.86421 1.90432 1.34369 1.73878 1.43804 1.40852 1.21533 1.20235 1.25723 1.19429 1.05413 1.03421 1.23283 0.88476 1.25657 0.97901 0.96092 0.95517 1.69967 1.32713 1.03997 1.39356 0.86023 0.80924 0.79247 0.79629 1.18699 1.20013 1.20130 1.18097 0.93400 0.91044 0.87881 1.22353 0.98322 1.01754 0.97233 1.20858 0.98305 0.95693 0.98709 1.20795 0.95603 1.00539 1.01948 1.20744 0.97309 0.98901 0.96970 1.20741 0.99408 0.95121 0.97169 1.74465 0.90384 1.24708 1.14856 0.91692 0.91627 0.87727 0.75533 0.84827 0.84664 0.91160 0.81925 0.87591 0.87990 0.87616 0.85808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.57 101.05 1.07 1.44 16 2 O -0.34 -4.96 10.58 -40.54 -0.43 -5.38 16 3 C 0.57 10.23 7.97 34.62 0.28 10.50 16 4 O -0.48 -9.60 16.88 -19.24 -0.32 -9.93 16 5 C 0.13 2.50 7.99 -156.34 -1.25 1.25 16 6 N -0.47 -7.77 11.42 -12.38 -0.14 -7.91 16 7 C 0.19 2.57 12.57 -90.48 -1.14 1.43 16 8 N -0.27 -4.55 3.15 -63.76 -0.20 -4.75 16 9 C 0.12 1.85 5.75 -5.19 -0.03 1.82 16 10 C 0.48 10.19 7.52 -10.99 -0.08 10.11 16 11 O -0.54 -13.01 12.30 5.56 0.07 -12.95 16 12 N -0.37 -8.51 2.66 -58.98 -0.16 -8.67 16 13 C -0.39 -8.32 7.40 -14.94 -0.11 -8.43 16 14 H 0.10 1.86 7.78 -52.48 -0.41 1.45 16 15 C 0.06 1.33 3.85 -17.49 -0.07 1.26 16 16 N -0.83 -20.16 11.62 55.49 0.64 -19.51 16 17 Si 0.92 16.77 29.56 -169.99 -5.02 11.74 16 18 H -0.26 -4.57 7.11 56.52 0.40 -4.16 16 19 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 20 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 21 C 0.19 4.56 5.71 -83.69 -0.48 4.09 16 22 C -0.18 -4.16 8.96 -39.37 -0.35 -4.51 16 23 C -0.12 -2.42 10.04 -39.61 -0.40 -2.82 16 24 C -0.17 -3.29 10.04 -39.53 -0.40 -3.69 16 25 C -0.12 -2.42 10.04 -39.61 -0.40 -2.81 16 26 C -0.10 -2.33 7.86 -39.37 -0.31 -2.64 16 27 N -0.20 -4.06 11.15 32.06 0.36 -3.70 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.23 1.76 8.06 -52.49 -0.42 1.34 16 32 H 0.13 2.11 8.05 -51.93 -0.42 1.69 16 33 H 0.14 1.54 8.00 -51.93 -0.42 1.13 16 34 H 0.28 6.42 8.32 -40.82 -0.34 6.08 16 35 H 0.16 4.08 4.75 -55.00 -0.26 3.82 16 36 H 0.11 1.93 8.06 -52.49 -0.42 1.50 16 37 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.12 2.81 6.03 -52.49 -0.32 2.49 16 LS Contribution 346.47 15.07 5.22 5.22 Total: -1.00 -32.14 346.47 -7.56 -39.70 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -3.91 Total: 9.15 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: -3.67 Total: 6.99 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 0.50 Total: -44.55 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.69 Total: -28.26 kcal Atomic # 14 Polarization: 16.77 SS G_CDS: -5.02 Total: 11.74 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.14 -7.56 -39.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076608334.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.275 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds