Wall clock time and date at job start Tue Mar 31 2020 05:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47103 * 2 1 4 4 N 1.46500 * 109.46790 * 179.97438 * 3 2 1 5 5 C 1.36970 * 119.99924 * 96.96469 * 4 3 2 6 6 H 1.08000 * 120.00039 * 159.92991 * 5 4 3 7 7 C 1.38980 * 119.99549 * 339.92858 * 5 4 3 8 8 N 1.31402 * 120.00384 * 357.41044 * 7 5 4 9 9 Si 1.86805 * 119.99578 * 177.40838 * 7 5 4 10 10 H 1.48501 * 109.47171 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47096 * 120.00036 * 9 7 5 12 12 H 1.48501 * 109.46844 * 240.00243 * 9 7 5 13 13 C 1.34777 * 120.00027 * 276.95954 * 4 3 2 14 14 O 1.21644 * 119.99857 * 184.62427 * 13 4 3 15 15 C 1.47288 * 120.00029 * 4.61826 * 13 4 3 16 16 C 1.47027 * 127.20146 * 311.89499 * 15 13 4 17 17 C 1.34169 * 105.96356 * 180.02562 * 16 15 13 18 18 S 1.76209 * 125.42777 * 179.97438 * 17 16 15 19 19 O 1.42106 * 106.39889 * 203.53942 * 18 17 16 20 20 O 1.42102 * 106.40161 * 336.45793 * 18 17 16 21 21 N 1.65596 * 107.21855 * 90.00068 * 18 17 16 22 22 C 1.46503 * 120.00049 * 64.99867 * 21 18 17 23 23 O 1.34217 * 109.14255 * 0.22841 * 17 16 15 24 24 C 1.33673 * 110.91133 * 359.61055 * 23 17 16 25 25 C 1.50701 * 125.81005 * 180.13508 * 24 23 17 26 26 H 1.08998 * 109.47141 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46845 * 300.00144 * 1 2 3 28 28 H 1.09002 * 109.47116 * 59.99777 * 1 2 3 29 29 H 1.08998 * 109.47117 * 239.99605 * 2 1 3 30 30 H 1.09005 * 109.46973 * 119.99472 * 2 1 3 31 31 H 1.08998 * 109.47456 * 59.99813 * 3 2 1 32 32 H 1.08997 * 109.47001 * 299.99759 * 3 2 1 33 33 H 0.97005 * 119.99837 * 179.97438 * 8 7 5 34 34 H 1.08010 * 127.01967 * 0.02562 * 16 15 13 35 35 H 0.97001 * 119.99740 * 245.00223 * 21 18 17 36 36 H 1.09004 * 109.46870 * 60.00216 * 22 21 18 37 37 H 1.08996 * 109.46960 * 180.02562 * 22 21 18 38 38 H 1.08998 * 109.46769 * 300.00159 * 22 21 18 39 39 H 1.09003 * 109.47086 * 270.29137 * 25 24 23 40 40 H 1.09000 * 109.46709 * 30.29103 * 25 24 23 41 41 H 1.08995 * 109.47000 * 150.29318 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1904 1.5861 -1.1766 6 1 5.2212 1.9081 -1.1655 7 6 3.5592 1.3174 -2.3853 8 7 2.3212 0.8769 -2.3964 9 14 4.4707 1.5826 -3.9941 10 1 5.8411 2.0796 -3.7105 11 1 4.5539 0.2976 -4.7335 12 1 3.7420 2.5811 -4.8171 13 6 4.1784 1.3012 1.1595 14 8 5.3919 1.3852 1.1720 15 6 3.4451 1.0451 2.4109 16 6 2.2656 1.7651 2.9133 17 6 1.9491 1.1852 4.0810 18 16 0.6074 1.6529 5.1232 19 8 0.9421 1.2100 6.4313 20 8 0.3120 3.0078 4.8132 21 7 -0.7105 0.7674 4.6527 22 6 -0.7084 -0.6892 4.8097 23 8 2.8206 0.1956 4.3316 24 6 3.7186 0.0902 3.3471 25 6 4.8451 -0.9090 3.2844 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.8806 0.6897 -3.2401 34 1 1.7577 2.5920 2.4391 35 1 -1.4839 1.2132 4.2730 36 1 -0.5845 -0.9408 5.8630 37 1 -1.6529 -1.0950 4.4475 38 1 0.1140 -1.1153 4.2351 39 1 5.7298 -0.4896 3.7636 40 1 4.5500 -1.8220 3.8016 41 1 5.0701 -1.1379 2.2428 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081708462.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:13 Heat of formation + Delta-G solvation = -76.030216 kcal Electronic energy + Delta-G solvation = -27818.074692 eV Core-core repulsion = 23827.983765 eV Total energy + Delta-G solvation = -3990.090927 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.31596 -38.52010 -37.38713 -36.02964 -35.42849 -35.20570 -33.04429 -32.08262 -31.93513 -31.30840 -27.24606 -26.21281 -25.95590 -24.74672 -22.62625 -21.40315 -20.70325 -20.21936 -19.02330 -17.88501 -17.60040 -16.89167 -16.52185 -16.20850 -15.69990 -15.33233 -14.87737 -14.62919 -14.11704 -13.96009 -13.82908 -13.74862 -13.29162 -13.06651 -12.92725 -12.82197 -12.63916 -12.32592 -12.28022 -12.18531 -12.02060 -11.82893 -11.73820 -11.43990 -11.24380 -11.10925 -10.85279 -10.52549 -10.40664 -10.25267 -9.93472 -9.82907 -9.60031 -8.94693 -8.72513 -8.50914 -7.74767 -6.36546 -3.98781 0.14431 1.31460 2.20376 2.75334 3.07337 3.11152 3.18883 3.25456 3.54021 3.85569 4.06890 4.42369 4.71450 4.82456 4.87518 5.01951 5.12724 5.27232 5.44810 5.51562 5.55930 5.57080 5.67226 5.74326 5.79590 5.91693 5.97495 6.16093 6.23612 6.33497 6.45960 6.61140 6.67909 6.79041 6.85244 7.06306 7.27468 7.43733 7.65338 8.01476 8.41059 9.04565 9.29037 9.85129 10.56459 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.017354 B = 0.004291 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.111004 B = 6523.793300 C = 7221.596868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.119 4.119 3 C 0.119 3.881 4 N -0.427 5.427 5 C -0.295 4.295 6 H 0.103 0.897 7 C 0.027 3.973 8 N -0.873 5.873 9 Si 0.932 3.068 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.281 1.281 13 C 0.505 3.495 14 O -0.585 6.585 15 C -0.200 4.200 16 C -0.051 4.051 17 C -0.596 4.596 18 S 2.731 3.269 19 O -0.944 6.944 20 O -0.942 6.942 21 N -1.113 6.113 22 C 0.084 3.916 23 O -0.129 6.129 24 C 0.073 3.927 25 C -0.073 4.073 26 H 0.039 0.961 27 H 0.034 0.966 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.025 0.975 31 H 0.031 0.969 32 H 0.114 0.886 33 H 0.267 0.733 34 H 0.171 0.829 35 H 0.421 0.579 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.986 -4.614 9.536 13.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.157 4.157 3 C -0.004 4.004 4 N -0.144 5.144 5 C -0.423 4.423 6 H 0.121 0.879 7 C -0.175 4.175 8 N -0.513 5.513 9 Si 0.758 3.242 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.207 1.207 13 C 0.293 3.707 14 O -0.471 6.471 15 C -0.206 4.206 16 C -0.073 4.073 17 C -0.725 4.725 18 S 2.813 3.187 19 O -0.934 6.934 20 O -0.932 6.932 21 N -0.875 5.875 22 C -0.063 4.063 23 O -0.025 6.025 24 C 0.018 3.982 25 C -0.129 4.129 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.117 0.883 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.131 0.869 33 H 0.078 0.922 34 H 0.188 0.812 35 H 0.256 0.744 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.333 -4.311 10.324 13.950 hybrid contribution 0.100 0.064 -1.865 1.869 sum -8.234 -4.248 8.459 12.545 Atomic orbital electron populations 1.21591 0.97384 0.99891 1.00535 1.21885 0.93943 0.98251 1.01667 1.21820 0.80323 0.97247 1.01006 1.43656 1.05708 1.59724 1.05283 1.19839 0.98161 1.42272 0.82060 0.87928 1.25367 0.96279 0.96123 0.99733 1.70026 1.11232 1.43411 1.26675 0.85763 0.79617 0.77969 0.80819 1.19254 1.20665 1.20658 1.16917 0.86481 0.84879 0.82427 1.90632 1.13251 1.57008 1.86221 1.21777 0.99147 1.00009 0.99629 1.23167 0.94428 0.97916 0.91806 1.35179 1.16239 1.04532 1.16547 1.01253 0.71754 0.72625 0.73041 1.93587 1.83372 1.82191 1.34245 1.93655 1.83306 1.31092 1.85121 1.55297 1.32468 1.17971 1.81720 1.21529 1.03996 0.78275 1.02458 1.83797 1.33198 1.43973 1.41539 1.23116 0.91800 0.97444 0.85885 1.20455 0.92375 0.94844 1.05257 0.94216 0.94682 0.92506 0.88311 0.95659 0.95108 0.86861 0.92242 0.81154 0.74439 0.91158 0.89700 0.91801 0.88963 0.90350 0.88257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.91 37.16 0.37 -1.83 16 2 C -0.12 -2.39 5.57 -26.73 -0.15 -2.53 16 3 C 0.12 2.59 4.26 -4.04 -0.02 2.57 16 4 N -0.43 -10.65 2.64 -116.07 -0.31 -10.96 16 5 C -0.30 -7.84 9.39 -14.98 -0.14 -7.98 16 6 H 0.10 2.88 7.31 -52.49 -0.38 2.50 16 7 C 0.03 0.67 5.28 -17.46 -0.09 0.57 16 8 N -0.87 -20.92 7.87 55.50 0.44 -20.48 16 9 Si 0.93 19.75 29.55 -169.99 -5.02 14.73 16 10 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 11 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 12 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 13 C 0.50 12.46 7.10 -12.58 -0.09 12.37 16 14 O -0.59 -16.09 16.60 5.24 0.09 -16.01 16 15 C -0.20 -4.14 4.60 -103.28 -0.47 -4.61 16 16 C -0.05 -0.92 8.97 -37.45 -0.34 -1.26 16 17 C -0.60 -9.53 7.29 29.30 0.21 -9.32 16 18 S 2.73 36.04 5.89 -107.50 -0.63 35.41 16 19 O -0.94 -14.64 17.74 -57.29 -1.02 -15.65 16 20 O -0.94 -14.24 17.81 -57.17 -1.02 -15.26 16 21 N -1.11 -10.23 6.19 -16.63 -0.10 -10.34 16 22 C 0.08 0.66 11.14 59.85 0.67 1.32 16 23 O -0.13 -2.17 10.52 7.59 0.08 -2.09 16 24 C 0.07 1.32 7.38 -34.93 -0.26 1.06 16 25 C -0.07 -1.08 10.10 36.01 0.36 -0.72 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.10 2.27 6.20 -51.93 -0.32 1.94 16 30 H 0.02 0.50 7.28 -51.93 -0.38 0.12 16 31 H 0.03 0.61 4.28 -51.93 -0.22 0.38 16 32 H 0.11 2.65 5.90 -51.93 -0.31 2.35 16 33 H 0.27 6.09 8.31 -40.82 -0.34 5.75 16 34 H 0.17 2.81 6.66 -52.48 -0.35 2.46 16 35 H 0.42 2.84 8.96 -34.46 -0.31 2.54 16 36 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.10 1.61 7.93 -51.93 -0.41 1.20 16 LS Contribution 355.05 15.07 5.35 5.35 Total: -1.00 -33.20 355.05 -7.29 -40.49 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -5.20 Total: 5.16 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 0.06 Total: -10.35 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.03 Total: -41.78 kcal Atomic # 8 Polarization: -47.14 SS G_CDS: -1.87 Total: -49.01 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 16 Polarization: 36.04 SS G_CDS: -0.63 Total: 35.41 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.20 -7.29 -40.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081708462.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.542 kcal (2) G-P(sol) polarization free energy of solvation -33.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds