Wall clock time and date at job start Tue Mar 31 2020 05:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 S 1.65601 * 120.00129 * 2 1 4 4 O 1.42104 * 106.39860 * 311.46292 * 3 2 1 5 5 O 1.42094 * 106.40249 * 178.54139 * 3 2 1 6 6 C 1.76198 * 107.21758 * 65.00038 * 3 2 1 7 7 C 1.34172 * 125.43783 * 90.00127 * 6 3 2 8 8 C 1.47026 * 105.95283 * 180.02562 * 7 6 3 9 9 C 1.47381 * 127.18900 * 179.97438 * 8 7 6 10 10 O 1.21617 * 119.99639 * 173.42529 * 9 8 7 11 11 N 1.34775 * 120.00192 * 353.15389 * 9 8 7 12 12 C 1.46498 * 119.99773 * 356.24274 * 11 9 8 13 13 C 1.46496 * 119.99803 * 176.24977 * 11 9 8 14 14 H 1.09000 * 109.47405 * 359.97438 * 13 11 9 15 15 C 1.53001 * 109.47481 * 119.99928 * 13 11 9 16 16 C 1.50701 * 109.46880 * 239.99416 * 13 11 9 17 17 H 1.07995 * 120.00012 * 0.02562 * 16 13 11 18 18 C 1.37878 * 119.99965 * 179.97438 * 16 13 11 19 19 N 1.31512 * 120.00303 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 119.99980 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47128 * 90.00306 * 20 18 16 22 22 H 1.48499 * 109.47010 * 210.00268 * 20 18 16 23 23 H 1.48502 * 109.47275 * 330.00121 * 20 18 16 24 24 C 1.36411 * 105.61758 * 0.22951 * 8 7 6 25 25 C 1.50705 * 125.80545 * 179.77629 * 24 8 7 26 26 O 1.33659 * 108.39630 * 359.63050 * 24 8 7 27 27 H 1.08997 * 109.46907 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47000 * 299.99712 * 1 2 3 29 29 H 1.08996 * 109.47144 * 60.00202 * 1 2 3 30 30 H 0.97000 * 120.00057 * 180.02562 * 2 1 3 31 31 H 1.08001 * 127.02376 * 0.06887 * 7 6 3 32 32 H 1.08997 * 109.46914 * 85.63843 * 12 11 9 33 33 H 1.09001 * 109.46907 * 205.63224 * 12 11 9 34 34 H 1.08991 * 109.47220 * 325.63232 * 12 11 9 35 35 H 1.09005 * 109.46783 * 299.99542 * 15 13 11 36 36 H 1.09000 * 109.46994 * 59.99512 * 15 13 11 37 37 H 1.08998 * 109.47381 * 180.02562 * 15 13 11 38 38 H 0.96996 * 120.00659 * 180.02562 * 19 18 16 39 39 H 1.08999 * 109.46725 * 89.99511 * 25 24 8 40 40 H 1.08998 * 109.46849 * 209.99846 * 25 24 8 41 41 H 1.08999 * 109.46313 * 330.00099 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7119 2.2329 -1.0216 5 8 3.6738 1.1003 0.0347 6 6 1.9378 2.2414 1.5253 7 6 2.6390 2.1025 2.6608 8 6 1.9743 2.9593 3.6536 9 6 2.3612 3.1561 5.0621 10 8 1.7893 3.9889 5.7391 11 7 3.3450 2.4092 5.6013 12 6 3.9736 1.3463 4.8132 13 6 3.7856 2.6604 6.9757 14 1 3.2075 3.4821 7.3983 15 6 3.5729 1.4007 7.8178 16 6 5.2483 3.0235 6.9758 17 1 5.7947 3.0636 6.0452 18 6 5.8885 3.3055 8.1640 19 7 5.2229 3.2571 9.2972 20 14 7.7013 3.7562 8.1640 21 1 7.8455 5.2276 8.0244 22 1 8.3205 3.3171 9.4403 23 1 8.3790 3.0823 7.0274 24 6 0.9214 3.5297 3.0003 25 6 -0.0720 4.4914 3.5999 26 8 0.9223 3.0931 1.7370 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.9500 -0.8400 -0.0004 31 1 3.5135 1.4875 2.8140 32 1 4.7791 1.7678 4.2120 33 1 4.3788 0.5882 5.4834 34 1 3.2305 0.8921 4.1579 35 1 2.5150 1.1381 7.8177 36 1 4.1513 0.5792 7.3951 37 1 3.9004 1.5877 8.8405 38 1 5.6732 3.4558 10.1330 39 1 0.2867 5.5124 3.4696 40 1 -1.0343 4.3777 3.1009 41 1 -0.1865 4.2794 4.6629 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081747734.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:24 Heat of formation + Delta-G solvation = -71.901875 kcal Electronic energy + Delta-G solvation = -26956.610296 eV Core-core repulsion = 22966.698388 eV Total energy + Delta-G solvation = -3989.911909 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.73026 -38.98515 -37.59053 -36.22296 -35.54164 -35.41537 -33.65086 -32.59441 -32.08255 -29.47301 -27.42072 -26.47339 -26.38972 -25.26394 -23.50089 -22.00067 -20.82930 -19.91566 -19.15370 -18.02605 -17.44792 -16.81375 -16.65493 -16.32434 -16.00641 -15.59276 -15.19257 -15.04761 -14.44268 -14.27497 -14.13428 -13.72825 -13.30054 -13.26404 -13.07792 -12.96208 -12.61720 -12.48041 -12.42447 -12.37751 -12.31720 -12.02453 -11.63567 -11.60529 -11.18508 -11.06381 -10.84492 -10.76096 -10.29853 -10.21011 -10.16072 -9.99391 -9.29381 -9.17977 -9.01868 -8.47321 -7.68819 -6.11714 -4.20011 -0.08510 0.97629 1.63758 2.47564 2.80162 3.25449 3.32077 3.32553 3.34273 3.76055 3.80052 4.19462 4.36552 4.51845 4.62268 4.74434 4.94581 5.06119 5.16435 5.20667 5.28877 5.35742 5.39122 5.45129 5.50137 5.57516 5.91971 5.93560 6.08765 6.18107 6.46837 6.65028 6.71253 6.76785 6.98725 7.33815 7.44271 7.65987 7.95388 8.12344 8.41787 8.75355 8.93230 9.46840 10.93598 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.017489 B = 0.003421 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.624942 B = 8183.699584 C = 8868.949453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.114 6.114 3 S 2.730 3.270 4 O -0.940 6.940 5 O -0.937 6.937 6 C -0.596 4.596 7 C -0.062 4.062 8 C -0.242 4.242 9 C 0.575 3.425 10 O -0.549 6.549 11 N -0.580 5.580 12 C 0.068 3.932 13 C 0.258 3.742 14 H 0.066 0.934 15 C -0.147 4.147 16 C -0.528 4.528 17 H 0.060 0.940 18 C 0.066 3.934 19 N -0.888 5.888 20 Si 0.899 3.101 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.109 3.891 25 C -0.084 4.084 26 O -0.126 6.126 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.422 0.578 31 H 0.190 0.810 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.012 0.988 36 H 0.031 0.969 37 H 0.095 0.905 38 H 0.264 0.736 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.756 -8.188 -16.771 21.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.876 5.876 3 S 2.811 3.189 4 O -0.930 6.930 5 O -0.927 6.927 6 C -0.724 4.724 7 C -0.083 4.083 8 C -0.247 4.247 9 C 0.363 3.637 10 O -0.429 6.429 11 N -0.310 5.310 12 C -0.075 4.075 13 C 0.159 3.841 14 H 0.084 0.916 15 C -0.206 4.206 16 C -0.567 4.567 17 H 0.078 0.922 18 C -0.137 4.137 19 N -0.526 5.526 20 Si 0.727 3.273 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.198 1.198 24 C 0.053 3.947 25 C -0.140 4.140 26 O -0.021 6.021 27 H 0.104 0.896 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.257 0.743 31 H 0.207 0.793 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.031 0.969 36 H 0.050 0.950 37 H 0.114 0.886 38 H 0.074 0.926 39 H 0.115 0.885 40 H 0.099 0.901 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.805 -7.170 -17.020 21.397 hybrid contribution 1.282 -0.251 0.913 1.594 sum -9.522 -7.421 -16.107 20.129 Atomic orbital electron populations 1.21546 0.77947 1.04415 1.02479 1.55328 1.16611 1.24278 1.91334 1.01400 0.72869 0.72526 0.72107 1.93602 1.78565 1.68299 1.52497 1.93673 1.29614 1.83270 1.86111 1.35480 1.01302 1.13014 1.22600 1.23969 0.98684 0.95803 0.89886 1.21741 1.00209 1.05732 0.97057 1.17055 0.80732 0.81843 0.84103 1.90719 1.54430 1.35855 1.61947 1.48061 1.34092 1.32300 1.16554 1.22186 0.97197 0.91634 0.96509 1.19019 0.95248 0.95274 0.74592 0.91643 1.22103 0.96486 0.97685 1.04278 1.21317 0.94246 1.47697 0.93404 0.92207 1.24883 0.98501 0.94992 0.95304 1.69870 1.36288 1.48481 0.97926 0.86477 0.84512 0.78857 0.77453 1.20572 1.21079 1.19848 1.23419 0.95925 0.94159 0.81220 1.20725 0.94753 0.96150 1.02357 1.83857 1.42078 1.47808 1.28353 0.89608 0.91914 0.90991 0.74341 0.79339 0.92738 0.90175 0.92115 0.96906 0.95039 0.88636 0.92622 0.88517 0.90114 0.86733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.45 11.14 59.85 0.67 1.12 16 2 N -1.11 -7.55 6.19 -16.64 -0.10 -7.65 16 3 S 2.73 29.57 5.89 -107.50 -0.63 28.93 16 4 O -0.94 -12.70 17.74 -57.28 -1.02 -13.72 16 5 O -0.94 -12.08 17.81 -57.17 -1.02 -13.10 16 6 C -0.60 -7.81 7.29 29.30 0.21 -7.59 16 7 C -0.06 -0.90 8.57 -37.45 -0.32 -1.22 16 8 C -0.24 -4.16 6.09 -103.27 -0.63 -4.79 16 9 C 0.58 12.15 7.66 -12.54 -0.10 12.05 16 10 O -0.55 -12.98 14.28 5.26 0.08 -12.90 16 11 N -0.58 -12.48 2.75 -176.56 -0.49 -12.97 16 12 C 0.07 1.16 7.92 59.85 0.47 1.63 16 13 C 0.26 6.53 2.63 -69.08 -0.18 6.35 16 14 H 0.07 1.90 6.90 -51.93 -0.36 1.54 16 15 C -0.15 -3.45 8.96 37.16 0.33 -3.12 16 16 C -0.53 -14.20 8.37 -34.44 -0.29 -14.49 16 17 H 0.06 1.60 7.65 -52.49 -0.40 1.20 16 18 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 19 N -0.89 -24.81 11.32 55.43 0.63 -24.18 16 20 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 C 0.11 1.63 7.37 -34.96 -0.26 1.37 16 25 C -0.08 -1.01 9.82 36.01 0.35 -0.66 16 26 O -0.13 -1.75 10.52 7.62 0.08 -1.67 16 27 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 30 H 0.42 1.84 8.96 -34.47 -0.31 1.53 16 31 H 0.19 2.40 4.86 -52.49 -0.26 2.14 16 32 H 0.05 0.89 7.63 -51.93 -0.40 0.50 16 33 H 0.08 1.34 6.43 -51.93 -0.33 1.01 16 34 H 0.06 0.84 4.89 -51.93 -0.25 0.58 16 35 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 37 H 0.10 2.46 6.07 -51.93 -0.32 2.15 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 39 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.11 1.57 6.65 -51.93 -0.35 1.22 16 LS Contribution 352.31 15.07 5.31 5.31 Total: -1.00 -35.44 352.31 -7.00 -42.44 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -4.98 Total: 1.19 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: 0.17 Total: -7.66 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.04 Total: -44.80 kcal Atomic # 8 Polarization: -39.51 SS G_CDS: -1.88 Total: -41.39 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 29.57 SS G_CDS: -0.63 Total: 28.93 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.44 -7.00 -42.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081747734.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.462 kcal (2) G-P(sol) polarization free energy of solvation -35.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds