Wall clock time and date at job start Tue Mar 31 2020 05:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 S 1.65597 * 120.00264 * 2 1 4 4 O 1.42095 * 106.40378 * 178.81783 * 3 2 1 5 5 O 1.42099 * 106.40262 * 311.74070 * 3 2 1 6 6 C 1.76205 * 107.21507 * 65.27574 * 3 2 1 7 7 C 1.34180 * 125.43572 * 90.00070 * 6 3 2 8 8 C 1.47021 * 105.95160 * 179.97438 * 7 6 3 9 9 C 1.47385 * 127.18836 * 179.97438 * 8 7 6 10 10 O 1.21609 * 119.99624 * 141.21530 * 9 8 7 11 11 N 1.34777 * 120.00059 * 321.21712 * 9 8 7 12 12 C 1.46505 * 119.99946 * 5.20609 * 11 9 8 13 13 C 1.46500 * 119.99909 * 185.20468 * 11 9 8 14 14 H 1.09004 * 109.47178 * 0.02562 * 13 11 9 15 15 C 1.53000 * 109.47267 * 239.99863 * 13 11 9 16 16 C 1.50700 * 109.47018 * 119.99944 * 13 11 9 17 17 H 1.08000 * 119.99968 * 359.97438 * 16 13 11 18 18 C 1.37876 * 120.00312 * 180.02562 * 16 13 11 19 19 N 1.31514 * 119.99574 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 120.00347 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.47067 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47204 * 119.99585 * 20 18 16 23 23 H 1.48494 * 109.47323 * 239.99848 * 20 18 16 24 24 C 1.36409 * 105.61511 * 0.02562 * 8 7 6 25 25 C 1.50705 * 125.79918 * 180.02562 * 24 8 7 26 26 O 1.33652 * 108.40120 * 359.73250 * 24 8 7 27 27 H 1.08999 * 109.47116 * 179.72460 * 1 2 3 28 28 H 1.09002 * 109.46447 * 299.72220 * 1 2 3 29 29 H 1.08991 * 109.47105 * 59.72196 * 1 2 3 30 30 H 0.97006 * 119.99899 * 180.28146 * 2 1 3 31 31 H 1.08005 * 127.02178 * 359.96944 * 7 6 3 32 32 H 1.09000 * 109.47059 * 84.55021 * 12 11 9 33 33 H 1.08996 * 109.46754 * 204.54430 * 12 11 9 34 34 H 1.08996 * 109.47189 * 324.54536 * 12 11 9 35 35 H 1.09000 * 109.46973 * 60.00163 * 15 13 11 36 36 H 1.08999 * 109.46684 * 179.97438 * 15 13 11 37 37 H 1.09002 * 109.47120 * 300.00259 * 15 13 11 38 38 H 0.97000 * 119.99776 * 180.02562 * 19 18 16 39 39 H 1.09001 * 109.47083 * 89.99826 * 25 24 8 40 40 H 1.08998 * 109.47303 * 209.99748 * 25 24 8 41 41 H 1.09003 * 109.47009 * 330.00124 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2931 1.4341 0.0000 4 8 3.6740 1.1001 0.0281 5 8 1.7078 2.2354 -1.0171 6 6 1.9442 2.2377 1.5288 7 6 2.6502 2.0960 2.6611 8 6 1.9904 2.9513 3.6584 9 6 2.3834 3.1449 5.0656 10 8 2.3031 4.2471 5.5731 11 7 2.8317 2.1005 5.7899 12 6 3.0367 0.7990 5.1493 13 6 3.1140 2.2667 7.2178 14 1 2.9032 3.2947 7.5126 15 6 4.5866 1.9502 7.4868 16 6 2.2448 1.3280 8.0143 17 1 1.5512 0.6734 7.5075 18 6 2.3343 1.3055 9.3899 19 7 3.1786 2.1030 10.0070 20 14 1.2575 0.1414 10.3771 21 1 0.4016 -0.6450 9.4528 22 1 2.1161 -0.7818 11.1618 23 1 0.3991 0.9249 11.3015 24 6 0.9379 3.5273 3.0093 25 6 -0.0480 4.4940 3.6132 26 8 0.9333 3.0935 1.7452 27 1 -0.3633 -1.0276 -0.0049 28 1 -0.3632 0.5095 0.8925 29 1 -0.3633 0.5181 -0.8874 30 1 1.9501 -0.8401 -0.0041 31 1 3.5244 1.4794 2.8095 32 1 4.0223 0.7742 4.6842 33 1 2.9687 0.0105 5.8987 34 1 2.2719 0.6440 4.3884 35 1 5.2152 2.6292 6.9107 36 1 4.7966 2.0743 8.5491 37 1 4.7969 0.9221 7.1921 38 1 3.2419 2.0869 10.9748 39 1 0.3155 5.5132 3.4817 40 1 -1.0130 4.3857 3.1181 41 1 -0.1594 4.2825 4.6767 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081747737.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:27 Heat of formation + Delta-G solvation = -85.433074 kcal Electronic energy + Delta-G solvation = -26948.169110 eV Core-core repulsion = 22957.670445 eV Total energy + Delta-G solvation = -3990.498665 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.71477 -38.95804 -37.60148 -36.23501 -35.46843 -35.40255 -33.52895 -32.61507 -32.17278 -29.49326 -27.36431 -26.40581 -26.26160 -25.29070 -23.55142 -21.96948 -20.83939 -19.86635 -19.12882 -18.03936 -17.56241 -16.79227 -16.58384 -16.44907 -15.89418 -15.60777 -15.22874 -15.08106 -14.48736 -14.29750 -14.12181 -13.60669 -13.31173 -13.25397 -13.08076 -12.97017 -12.56290 -12.49550 -12.39079 -12.36480 -12.21711 -12.01941 -11.77639 -11.61403 -11.47906 -11.12996 -10.92108 -10.78480 -10.32086 -10.25673 -10.14643 -9.98722 -9.32865 -9.21738 -8.97368 -8.50642 -7.70406 -6.14710 -4.23356 -0.09046 0.97782 1.72844 2.47565 2.79024 3.20336 3.28113 3.30389 3.31839 3.46451 3.88526 4.18794 4.32474 4.51020 4.63994 4.70830 4.99505 5.08589 5.16352 5.21605 5.29956 5.38260 5.40564 5.44394 5.47643 5.65863 5.86069 5.92099 6.06091 6.26382 6.47566 6.65132 6.71365 6.79174 6.99613 7.32651 7.44372 7.63695 7.93804 8.10557 8.40196 8.72503 8.91366 9.43403 10.90672 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.017794 B = 0.003330 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.164817 B = 8406.115320 C = 8669.235801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -1.113 6.113 3 S 2.731 3.269 4 O -0.938 6.938 5 O -0.940 6.940 6 C -0.593 4.593 7 C -0.048 4.048 8 C -0.237 4.237 9 C 0.575 3.425 10 O -0.544 6.544 11 N -0.581 5.581 12 C 0.079 3.921 13 C 0.258 3.742 14 H 0.065 0.935 15 C -0.147 4.147 16 C -0.528 4.528 17 H 0.060 0.940 18 C 0.066 3.934 19 N -0.885 5.885 20 Si 0.899 3.101 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.102 3.898 25 C -0.081 4.081 26 O -0.125 6.125 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.422 0.578 31 H 0.175 0.825 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.012 0.988 36 H 0.094 0.906 37 H 0.030 0.970 38 H 0.264 0.736 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.548 -5.145 -18.576 20.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.875 5.875 3 S 2.812 3.188 4 O -0.928 6.928 5 O -0.930 6.930 6 C -0.721 4.721 7 C -0.070 4.070 8 C -0.242 4.242 9 C 0.361 3.639 10 O -0.424 6.424 11 N -0.311 5.311 12 C -0.065 4.065 13 C 0.158 3.842 14 H 0.083 0.917 15 C -0.205 4.205 16 C -0.567 4.567 17 H 0.078 0.922 18 C -0.137 4.137 19 N -0.523 5.523 20 Si 0.727 3.273 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.209 1.209 24 C 0.045 3.955 25 C -0.137 4.137 26 O -0.020 6.020 27 H 0.104 0.896 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.257 0.743 31 H 0.192 0.808 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.072 0.928 35 H 0.031 0.969 36 H 0.113 0.887 37 H 0.049 0.951 38 H 0.074 0.926 39 H 0.117 0.883 40 H 0.102 0.898 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.324 -3.959 -18.920 20.050 hybrid contribution -0.345 -1.216 1.506 1.966 sum -5.670 -5.175 -17.414 19.031 Atomic orbital electron populations 1.21552 0.77875 1.04473 1.02497 1.55308 1.16645 1.24248 1.91302 1.01365 0.72843 0.72529 0.72081 1.93667 1.29742 1.83312 1.86115 1.93601 1.78425 1.68204 1.52736 1.35401 1.01209 1.12932 1.22582 1.23233 0.98212 0.95540 0.90005 1.21717 1.00422 1.04992 0.97104 1.17119 0.78487 0.84959 0.83310 1.90756 1.55766 1.24118 1.71746 1.48127 1.62463 1.08572 1.11950 1.21802 0.99042 0.87281 0.98397 1.19023 0.92828 0.99488 0.72826 0.91721 1.22090 0.96770 0.97740 1.03929 1.21333 1.21849 1.22171 0.91353 0.92166 1.24893 0.95485 0.95757 0.97576 1.69890 1.35666 1.37613 1.09174 0.86426 0.80272 0.80586 0.80002 1.19841 1.20868 1.20858 1.23305 0.96359 0.94547 0.81253 1.20609 0.95229 0.96274 1.01599 1.83851 1.42241 1.47714 1.28195 0.89573 0.91845 0.91007 0.74325 0.80774 0.93734 0.89583 0.92809 0.96879 0.88705 0.95087 0.92634 0.88336 0.89840 0.87737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.47 11.14 59.85 0.67 1.14 16 2 N -1.11 -7.61 6.19 -16.63 -0.10 -7.71 16 3 S 2.73 29.15 5.89 -107.50 -0.63 28.52 16 4 O -0.94 -11.88 17.81 -57.17 -1.02 -12.90 16 5 O -0.94 -12.55 17.73 -57.29 -1.02 -13.56 16 6 C -0.59 -7.68 7.30 29.30 0.21 -7.47 16 7 C -0.05 -0.69 8.52 -37.45 -0.32 -1.01 16 8 C -0.24 -4.06 5.44 -103.28 -0.56 -4.62 16 9 C 0.57 12.14 7.32 -12.54 -0.09 12.05 16 10 O -0.54 -13.17 15.68 5.27 0.08 -13.09 16 11 N -0.58 -12.39 2.75 -176.55 -0.49 -12.88 16 12 C 0.08 1.32 8.04 59.85 0.48 1.80 16 13 C 0.26 6.48 2.63 -69.08 -0.18 6.30 16 14 H 0.06 1.87 6.91 -51.93 -0.36 1.52 16 15 C -0.15 -3.48 8.97 37.16 0.33 -3.15 16 16 C -0.53 -13.87 7.95 -34.44 -0.27 -14.14 16 17 H 0.06 1.55 7.43 -52.49 -0.39 1.16 16 18 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 19 N -0.89 -24.50 11.32 55.43 0.63 -23.87 16 20 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 C 0.10 1.52 7.37 -34.97 -0.26 1.26 16 25 C -0.08 -0.99 9.88 36.01 0.36 -0.63 16 26 O -0.13 -1.73 10.52 7.66 0.08 -1.65 16 27 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 30 H 0.42 1.87 8.96 -34.47 -0.31 1.56 16 31 H 0.17 2.14 6.67 -52.48 -0.35 1.79 16 32 H 0.04 0.65 7.42 -51.93 -0.39 0.27 16 33 H 0.09 1.50 7.11 -51.93 -0.37 1.13 16 34 H 0.05 0.78 5.92 -51.93 -0.31 0.47 16 35 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 37 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 38 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.10 1.44 7.65 -51.93 -0.40 1.04 16 LS Contribution 357.55 15.07 5.39 5.39 Total: -1.00 -35.19 357.55 -7.08 -42.27 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.25 Total: 0.90 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: 0.27 Total: -6.82 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.04 Total: -44.46 kcal Atomic # 8 Polarization: -39.33 SS G_CDS: -1.87 Total: -41.20 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 29.15 SS G_CDS: -0.63 Total: 28.52 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.19 -7.08 -42.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081747737.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.168 kcal (2) G-P(sol) polarization free energy of solvation -35.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds