Wall clock time and date at job start Tue Mar 31 2020 05:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 S 1.65599 * 120.00141 * 2 1 4 4 O 1.42106 * 106.40227 * 311.45608 * 3 2 1 5 5 O 1.42100 * 106.40324 * 178.54122 * 3 2 1 6 6 C 1.76199 * 107.21905 * 64.99953 * 3 2 1 7 7 C 1.34176 * 125.43395 * 89.99995 * 6 3 2 8 8 C 1.47027 * 105.94976 * 179.97438 * 7 6 3 9 9 C 1.47383 * 127.18992 * 180.02562 * 8 7 6 10 10 O 1.21608 * 119.99787 * 179.97438 * 9 8 7 11 11 N 1.34773 * 119.99799 * 359.97438 * 9 8 7 12 12 C 1.46509 * 119.99612 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.46776 * 179.97438 * 12 11 9 14 14 C 1.53009 * 109.46747 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.46748 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00113 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99653 * 180.02562 * 15 14 13 18 18 N 1.31520 * 120.00018 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 120.00160 * 359.97438 * 17 15 14 20 20 H 1.48492 * 109.47177 * 89.99829 * 19 17 15 21 21 H 1.48502 * 109.46829 * 210.00431 * 19 17 15 22 22 H 1.48504 * 109.46762 * 329.99727 * 19 17 15 23 23 C 1.36410 * 105.61713 * 0.02562 * 8 7 6 24 24 C 1.50704 * 125.80522 * 180.02562 * 23 8 7 25 25 O 1.33655 * 108.39559 * 359.75344 * 23 8 7 26 26 H 1.09000 * 109.47279 * 59.99983 * 1 2 3 27 27 H 1.09000 * 109.47419 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47002 * 300.00253 * 1 2 3 29 29 H 0.97005 * 119.99711 * 179.97438 * 2 1 3 30 30 H 1.07998 * 127.02654 * 359.97438 * 7 6 3 31 31 H 0.96997 * 120.00386 * 0.02562 * 11 9 8 32 32 H 1.08995 * 109.47392 * 300.00528 * 12 11 9 33 33 H 1.08999 * 109.46616 * 60.00614 * 12 11 9 34 34 H 1.08995 * 109.47663 * 300.00450 * 13 12 11 35 35 H 1.08999 * 109.46975 * 60.00922 * 13 12 11 36 36 H 1.09003 * 109.47074 * 300.00223 * 14 13 12 37 37 H 1.08991 * 109.46946 * 60.00326 * 14 13 12 38 38 H 0.96995 * 119.99989 * 179.97438 * 18 17 15 39 39 H 1.08991 * 109.47017 * 89.99704 * 24 23 8 40 40 H 1.09000 * 109.47031 * 210.00380 * 24 23 8 41 41 H 1.09004 * 109.46353 * 329.99640 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7120 2.2329 -1.0217 5 8 3.6738 1.1002 0.0347 6 6 1.9378 2.2415 1.5253 7 6 2.6391 2.1025 2.6608 8 6 1.9751 2.9603 3.6533 9 6 2.3629 3.1582 5.0613 10 8 1.7159 3.9043 5.7710 11 7 3.4344 2.5124 5.5623 12 6 3.8202 2.7096 6.9619 13 6 5.0592 1.8675 7.2729 14 6 5.4616 2.0730 8.7347 15 6 6.6823 1.2440 9.0408 16 1 7.1264 0.6316 8.2700 17 6 7.2316 1.2667 10.3052 18 7 8.2966 0.5429 10.5726 19 14 6.4631 2.3255 11.6386 20 1 5.4381 1.5364 12.3679 21 1 7.5160 2.7671 12.5882 22 1 5.8244 3.5147 11.0196 23 6 0.9253 3.5347 2.9985 24 6 -0.0630 4.5030 3.5958 25 8 0.9257 3.0975 1.7355 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.9499 -0.8401 0.0004 30 1 3.5127 1.4864 2.8143 31 1 3.9507 1.9176 4.9961 32 1 4.0440 3.7627 7.1322 33 1 3.0004 2.4027 7.6113 34 1 4.8350 0.8145 7.1026 35 1 5.8791 2.1740 6.6234 36 1 5.6857 3.1260 8.9053 37 1 4.6416 1.7662 9.3838 38 1 8.6833 0.5591 11.4620 39 1 0.3009 5.5217 3.4632 40 1 -1.0260 4.3933 3.0970 41 1 -0.1789 4.2940 4.6593 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081748582.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:20 Heat of formation + Delta-G solvation = -106.281794 kcal Electronic energy + Delta-G solvation = -25403.929062 eV Core-core repulsion = 21412.526329 eV Total energy + Delta-G solvation = -3991.402734 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.10230 -39.47450 -37.80916 -36.43616 -35.68434 -35.59592 -33.75265 -33.26502 -32.52389 -31.43911 -28.15757 -27.02117 -26.58256 -24.15035 -22.82738 -21.61685 -20.93983 -20.53815 -19.68119 -18.86757 -18.19077 -17.09443 -16.85614 -16.72721 -16.35577 -15.97374 -15.45042 -15.41511 -15.23152 -14.45163 -14.23932 -14.06651 -14.03602 -13.65418 -13.46051 -13.40715 -13.30490 -12.73982 -12.68952 -12.62909 -12.58339 -12.20436 -12.10602 -11.99017 -11.89373 -11.14662 -10.94112 -10.51813 -10.35683 -10.29530 -10.05901 -9.85897 -9.70317 -9.46801 -9.26736 -8.96081 -8.58638 -6.09210 -4.08256 -0.32511 0.62701 1.14165 2.15508 2.51136 3.08864 3.13697 3.18706 3.28486 3.36355 3.40020 3.93645 4.12288 4.26866 4.41379 4.44988 4.48166 4.87672 4.89574 5.03292 5.07472 5.12464 5.18799 5.21062 5.24639 5.45364 5.55029 5.57658 5.71083 5.93569 6.22227 6.25817 6.33357 6.37526 6.60075 6.72223 7.17588 7.31190 7.47618 7.72579 8.13030 8.47016 8.94514 9.52762 11.04010 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.018065 B = 0.002333 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.595829 B =11997.518154 C =13098.678566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -1.112 6.112 3 S 2.728 3.272 4 O -0.936 6.936 5 O -0.934 6.934 6 C -0.585 4.585 7 C -0.050 4.050 8 C -0.257 4.257 9 C 0.586 3.414 10 O -0.541 6.541 11 N -0.717 5.717 12 C 0.115 3.885 13 C -0.115 4.115 14 C -0.010 4.010 15 C -0.523 4.523 16 H 0.072 0.928 17 C 0.067 3.933 18 N -0.902 5.902 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.264 1.264 23 C 0.121 3.879 24 C -0.090 4.090 25 O -0.122 6.122 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.423 0.577 30 H 0.177 0.823 31 H 0.400 0.600 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.019 0.981 37 H 0.014 0.986 38 H 0.264 0.736 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.734 0.719 -23.009 30.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.874 5.874 3 S 2.808 3.192 4 O -0.926 6.926 5 O -0.924 6.924 6 C -0.712 4.712 7 C -0.071 4.071 8 C -0.262 4.262 9 C 0.373 3.627 10 O -0.421 6.421 11 N -0.366 5.366 12 C -0.008 4.008 13 C -0.153 4.153 14 C -0.048 4.048 15 C -0.561 4.561 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.541 5.541 19 Si 0.707 3.293 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.189 1.189 23 C 0.064 3.936 24 C -0.146 4.146 25 O -0.017 6.017 26 H 0.091 0.909 27 H 0.106 0.894 28 H 0.080 0.920 29 H 0.258 0.742 30 H 0.194 0.806 31 H 0.234 0.766 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.037 0.963 37 H 0.033 0.967 38 H 0.073 0.927 39 H 0.117 0.883 40 H 0.103 0.897 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -19.860 1.786 -23.172 30.570 hybrid contribution 0.193 -0.303 1.440 1.484 sum -19.667 1.484 -21.732 29.347 Atomic orbital electron populations 1.21565 0.77834 1.04616 1.02449 1.55311 1.16684 1.24264 1.91177 1.01559 0.72939 0.72595 0.72123 1.93616 1.78540 1.68336 1.52123 1.93689 1.29514 1.83221 1.85961 1.35584 1.00573 1.12245 1.22797 1.23129 0.98050 0.95803 0.90157 1.21473 1.01217 1.07157 0.96392 1.17049 0.80763 0.80258 0.84680 1.90763 1.53345 1.37979 1.59981 1.45992 1.29486 1.47097 1.14069 1.21723 0.98423 1.01149 0.79471 1.21728 0.94415 0.98665 1.00451 1.19498 0.96999 0.97430 0.90910 1.21086 1.10637 1.26763 0.97613 0.90984 1.25033 0.94677 0.95206 0.98559 1.69911 1.21889 1.40655 1.21659 0.86771 0.79124 0.81548 0.81822 1.20252 1.21341 1.18906 1.23473 0.95321 0.93533 0.81263 1.20811 0.95232 0.95957 1.02570 1.83908 1.42145 1.47402 1.28205 0.90884 0.89444 0.91983 0.74165 0.80560 0.76593 0.91452 0.91479 0.92036 0.91957 0.96272 0.96725 0.92660 0.88335 0.89666 0.86513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.30 11.14 59.84 0.67 0.96 16 2 N -1.11 -5.37 6.19 -16.63 -0.10 -5.47 16 3 S 2.73 22.78 5.89 -107.50 -0.63 22.15 16 4 O -0.94 -10.55 17.74 -57.29 -1.02 -11.57 16 5 O -0.93 -9.89 17.81 -57.17 -1.02 -10.91 16 6 C -0.58 -5.64 7.29 29.30 0.21 -5.43 16 7 C -0.05 -0.50 10.29 -37.45 -0.39 -0.88 16 8 C -0.26 -3.06 6.31 -103.27 -0.65 -3.71 16 9 C 0.59 8.31 7.81 -12.54 -0.10 8.21 16 10 O -0.54 -9.00 14.84 5.27 0.08 -8.92 16 11 N -0.72 -9.72 5.55 -61.39 -0.34 -10.06 16 12 C 0.11 1.83 5.67 -4.04 -0.02 1.81 16 13 C -0.11 -2.08 5.27 -26.73 -0.14 -2.22 16 14 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 15 C -0.52 -14.58 9.66 -34.44 -0.33 -14.91 16 16 H 0.07 2.14 7.99 -52.49 -0.42 1.73 16 17 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 18 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 19 Si 0.88 21.51 27.47 -169.99 -4.67 16.85 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 23 C 0.12 1.29 7.37 -34.97 -0.26 1.03 16 24 C -0.09 -0.73 9.89 36.01 0.36 -0.37 16 25 O -0.12 -1.27 10.52 7.66 0.08 -1.19 16 26 H 0.07 0.27 8.10 -51.93 -0.42 -0.15 16 27 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.42 1.14 8.96 -34.47 -0.31 0.83 16 30 H 0.18 1.32 7.74 -52.49 -0.41 0.92 16 31 H 0.40 4.44 7.64 -40.82 -0.31 4.13 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 37 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.12 1.10 6.48 -51.93 -0.34 0.76 16 LS Contribution 366.08 15.07 5.52 5.52 Total: -1.00 -37.42 366.08 -7.71 -45.14 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -5.52 Total: -0.70 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -0.86 Total: -14.04 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.33 Total: -42.33 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -1.88 Total: -32.58 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.85 kcal Atomic # 16 Polarization: 22.78 SS G_CDS: -0.63 Total: 22.15 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.42 -7.71 -45.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081748582.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.143 kcal (2) G-P(sol) polarization free energy of solvation -37.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds