Wall clock time and date at job start Tue Mar 31 2020 04:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 S 1.65608 * 120.00050 * 2 1 4 4 O 1.42099 * 104.26906 * 308.92288 * 3 2 1 5 5 O 1.42095 * 104.27595 * 181.06898 * 3 2 1 6 6 C 1.81396 * 104.44769 * 64.99272 * 3 2 1 7 7 C 1.50710 * 109.46545 * 180.02562 * 6 3 2 8 8 O 1.21288 * 120.00199 * 359.97438 * 7 6 3 9 9 N 1.34774 * 119.99838 * 180.02562 * 7 6 3 10 10 C 1.46505 * 120.00192 * 4.73167 * 9 7 6 11 11 C 1.50700 * 109.47457 * 270.00752 * 10 9 7 12 12 H 1.08002 * 119.99601 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00123 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00189 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 119.99940 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47150 * 90.00022 * 15 13 11 17 17 H 1.48503 * 109.47040 * 210.00170 * 15 13 11 18 18 H 1.48501 * 109.47435 * 329.99840 * 15 13 11 19 19 C 1.40029 * 120.00059 * 184.73892 * 9 7 6 20 20 C 1.38849 * 120.04594 * 67.63739 * 19 9 7 21 21 C 1.38112 * 119.95571 * 179.72453 * 20 19 9 22 22 C 1.38480 * 120.04124 * 0.54848 * 21 20 19 23 23 F 1.35100 * 119.94864 * 179.70284 * 22 21 20 24 24 C 1.38463 * 120.09239 * 359.72581 * 22 21 20 25 25 C 1.38115 * 120.04527 * 359.97438 * 24 22 21 26 26 H 1.08997 * 109.46940 * 60.00335 * 1 2 3 27 27 H 1.08996 * 109.47155 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47544 * 300.00591 * 1 2 3 29 29 H 0.96997 * 120.00119 * 179.97438 * 2 1 3 30 30 H 1.08995 * 109.47172 * 60.00881 * 6 3 2 31 31 H 1.09000 * 109.47611 * 299.99566 * 6 3 2 32 32 H 1.09005 * 109.46561 * 30.00460 * 10 9 7 33 33 H 1.09004 * 109.47073 * 150.00325 * 10 9 7 34 34 H 0.96995 * 120.00486 * 180.02562 * 14 13 11 35 35 H 1.08002 * 120.01859 * 359.97438 * 20 19 9 36 36 H 1.07998 * 119.97803 * 180.25481 * 21 20 19 37 37 H 1.08003 * 119.97866 * 179.97438 * 24 22 21 38 38 H 1.08005 * 120.02466 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7188 2.1701 -1.0714 5 8 3.6606 1.0492 -0.0257 6 6 1.8762 2.1974 1.5919 7 6 2.5782 3.5258 1.7111 8 8 3.2899 3.9186 0.8110 9 7 2.4158 4.2767 2.8184 10 6 1.6419 3.7574 3.9488 11 6 0.1933 4.1388 3.7834 12 1 -0.1194 4.7112 2.9225 13 6 -0.7326 3.7570 4.7309 14 7 -1.9966 4.0903 4.5868 15 14 -0.1917 2.7664 6.2193 16 1 0.1841 3.6908 7.3192 17 1 -1.3076 1.8940 6.6655 18 1 0.9783 1.9269 5.8568 19 6 2.9868 5.5534 2.8885 20 6 2.5159 6.5714 2.0701 21 6 3.0765 7.8314 2.1448 22 6 4.1153 8.0768 3.0271 23 9 4.6664 9.3084 3.0944 24 6 4.5902 7.0615 3.8400 25 6 4.0281 5.8017 3.7728 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.9500 -0.8400 0.0004 30 1 2.1956 1.5433 2.4032 31 1 0.7986 2.3499 1.6508 32 1 1.7302 2.6714 3.9812 33 1 2.0255 4.1811 4.8770 34 1 -2.6480 3.8221 5.2535 35 1 1.7089 6.3791 1.3785 36 1 2.7078 8.6246 1.5114 37 1 5.4007 7.2548 4.5272 38 1 4.3991 5.0098 4.4068 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083608427.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:48 Heat of formation + Delta-G solvation = -112.178886 kcal Electronic energy + Delta-G solvation = -26455.612579 eV Core-core repulsion = 22340.493823 eV Total energy + Delta-G solvation = -4115.118756 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.72804 -40.28370 -38.18195 -36.93170 -35.78542 -35.48349 -34.94979 -32.80261 -31.00239 -30.89736 -29.01140 -27.64366 -25.99787 -23.30929 -22.70032 -22.45773 -19.98184 -18.98981 -17.96688 -17.52358 -17.38685 -17.02549 -16.49653 -16.29242 -16.08769 -15.73511 -15.39331 -15.18293 -14.58822 -14.29818 -14.22979 -13.78212 -13.56948 -13.38657 -13.18989 -12.92035 -12.82591 -12.50442 -12.32299 -12.27150 -11.97464 -11.89240 -11.81488 -11.56056 -11.43115 -11.01299 -10.96621 -10.80076 -10.52836 -9.98835 -9.88180 -9.62662 -8.95163 -8.91924 -8.81287 -7.96459 -6.42059 -4.46703 0.30101 1.26982 1.42728 2.67377 2.84619 3.00836 3.06578 3.10791 3.24981 3.75486 3.94759 4.06516 4.36633 4.42291 4.55624 4.86744 4.92265 4.98664 5.00563 5.07608 5.39079 5.40793 5.54120 5.55937 5.66444 5.68684 5.75970 6.04055 6.20419 6.25199 6.30650 6.35913 6.61374 6.79116 6.87465 7.13080 7.17856 7.56190 8.08824 8.29380 8.61938 9.14314 10.69734 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.008882 B = 0.005521 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3151.644726 B = 5070.143540 C = 7376.171905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -1.127 6.127 3 S 2.646 3.354 4 O -0.942 6.942 5 O -0.951 6.951 6 C -0.662 4.662 7 C 0.554 3.446 8 O -0.548 6.548 9 N -0.541 5.541 10 C 0.206 3.794 11 C -0.550 4.550 12 H 0.082 0.918 13 C 0.081 3.919 14 N -0.882 5.882 15 Si 0.869 3.131 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.264 1.264 19 C 0.156 3.844 20 C -0.072 4.072 21 C -0.142 4.142 22 C 0.087 3.913 23 F -0.144 7.144 24 C -0.145 4.145 25 C -0.095 4.095 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.416 0.584 30 H 0.159 0.841 31 H 0.176 0.824 32 H 0.042 0.958 33 H 0.038 0.962 34 H 0.269 0.731 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.176 -4.846 -1.969 8.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.886 5.886 3 S 2.733 3.267 4 O -0.931 6.931 5 O -0.941 6.941 6 C -0.790 4.790 7 C 0.341 3.659 8 O -0.428 6.428 9 N -0.267 5.267 10 C 0.086 3.914 11 C -0.588 4.588 12 H 0.101 0.899 13 C -0.124 4.124 14 N -0.519 5.519 15 Si 0.695 3.305 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.189 1.189 19 C 0.065 3.935 20 C -0.091 4.091 21 C -0.161 4.161 22 C 0.067 3.933 23 F -0.123 7.123 24 C -0.164 4.164 25 C -0.114 4.114 26 H 0.088 0.912 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.250 0.750 30 H 0.177 0.823 31 H 0.193 0.807 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.753 -4.152 -2.995 8.474 hybrid contribution -0.308 -0.716 1.886 2.041 sum 6.444 -4.867 -1.109 8.152 Atomic orbital electron populations 1.21579 0.78503 1.04214 1.02663 1.55550 1.16237 1.24667 1.92169 1.04119 0.73412 0.73180 0.75984 1.93573 1.78833 1.72054 1.48681 1.93565 1.32528 1.81310 1.86718 1.31021 1.14344 1.06687 1.26991 1.19075 0.80198 0.84525 0.82096 1.90813 1.39606 1.73259 1.39105 1.45411 1.50455 1.13336 1.17480 1.20089 0.92283 0.95182 0.83821 1.21275 0.89480 1.37366 1.10726 0.89948 1.24840 0.94698 0.95300 0.97573 1.69869 1.01602 1.44855 1.35548 0.86975 0.78964 0.80835 0.83762 1.19649 1.20571 1.18865 1.17553 0.93497 0.85275 0.97197 1.21160 0.98521 0.90977 0.98447 1.20972 0.96982 0.98113 1.00038 1.17654 0.95920 0.80309 0.99377 1.91467 1.84646 1.40542 1.95649 1.20876 1.02256 0.92337 1.00959 1.21029 0.94500 0.96753 0.99153 0.91198 0.90039 0.91472 0.75045 0.82315 0.80679 0.94037 0.94371 0.92039 0.84643 0.84518 0.84623 0.84843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 11.03 59.85 0.66 1.37 16 2 N -1.13 -12.04 6.08 -16.64 -0.10 -12.14 16 3 S 2.65 40.77 4.60 -107.50 -0.49 40.28 16 4 O -0.94 -17.74 17.73 -57.55 -1.02 -18.76 16 5 O -0.95 -17.06 18.08 -57.55 -1.04 -18.10 16 6 C -0.66 -10.19 5.17 36.01 0.19 -10.00 16 7 C 0.55 10.72 7.54 -10.98 -0.08 10.63 16 8 O -0.55 -11.84 15.62 5.55 0.09 -11.75 16 9 N -0.54 -10.49 2.51 -114.71 -0.29 -10.77 16 10 C 0.21 4.13 3.95 -5.19 -0.02 4.11 16 11 C -0.55 -13.21 9.71 -34.44 -0.33 -13.54 16 12 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 13 C 0.08 2.00 5.47 -17.82 -0.10 1.91 16 14 N -0.88 -23.75 13.96 55.43 0.77 -22.98 16 15 Si 0.87 18.06 27.47 -169.99 -4.67 13.40 16 16 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 17 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 18 H -0.26 -5.02 6.54 56.52 0.37 -4.65 16 19 C 0.16 2.89 4.76 -83.66 -0.40 2.49 16 20 C -0.07 -1.28 9.53 -39.40 -0.38 -1.65 16 21 C -0.14 -2.19 10.02 -39.54 -0.40 -2.59 16 22 C 0.09 1.31 7.30 -39.41 -0.29 1.02 16 23 F -0.14 -2.12 17.26 2.25 0.04 -2.08 16 24 C -0.14 -2.07 10.02 -39.54 -0.40 -2.46 16 25 C -0.09 -1.50 9.69 -39.40 -0.38 -1.88 16 26 H 0.07 0.69 8.04 -51.93 -0.42 0.27 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.60 7.73 -51.93 -0.40 0.20 16 29 H 0.42 3.44 8.92 -34.47 -0.31 3.13 16 30 H 0.16 1.94 7.26 -51.93 -0.38 1.56 16 31 H 0.18 2.58 7.55 -51.92 -0.39 2.19 16 32 H 0.04 0.76 5.53 -51.93 -0.29 0.48 16 33 H 0.04 0.75 7.29 -51.93 -0.38 0.37 16 34 H 0.27 6.80 8.31 -40.82 -0.34 6.47 16 35 H 0.14 2.44 8.06 -52.49 -0.42 2.02 16 36 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 37 H 0.14 1.54 8.06 -52.48 -0.42 1.12 16 38 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 LS Contribution 347.30 15.07 5.23 5.23 Total: -1.00 -33.53 347.30 -7.67 -41.20 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -4.26 Total: 7.06 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -1.92 Total: -10.59 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.38 Total: -45.89 kcal Atomic # 8 Polarization: -46.63 SS G_CDS: -1.97 Total: -48.61 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -4.67 Total: 13.40 kcal Atomic # 16 Polarization: 40.77 SS G_CDS: -0.49 Total: 40.28 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.53 -7.67 -41.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083608427.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.979 kcal (2) G-P(sol) polarization free energy of solvation -33.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds