Wall clock time and date at job start Tue Mar 31 2020 05:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47186 * 2 1 4 4 C 1.46507 * 120.00316 * 274.82859 * 3 2 1 5 5 C 1.50705 * 109.46755 * 269.99844 * 4 3 2 6 6 H 1.07994 * 120.00310 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99747 * 179.97438 * 5 4 3 8 8 N 1.31509 * 119.99781 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99949 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46849 * 89.99950 * 9 7 5 11 11 H 1.48490 * 109.47105 * 210.00077 * 9 7 5 12 12 H 1.48498 * 109.47214 * 330.00462 * 9 7 5 13 13 C 1.34776 * 120.00237 * 94.82280 * 3 2 1 14 14 O 1.21612 * 120.00443 * 185.77316 * 13 3 2 15 15 C 1.47385 * 119.99552 * 5.78163 * 13 3 2 16 16 C 1.47023 * 127.19236 * 53.70123 * 15 13 3 17 17 C 1.34176 * 105.95076 * 180.02562 * 16 15 13 18 18 S 1.76203 * 125.43747 * 179.97438 * 17 16 15 19 19 O 1.42102 * 106.40240 * 203.54065 * 18 17 16 20 20 O 1.42104 * 106.40076 * 336.45658 * 18 17 16 21 21 N 1.65594 * 107.21806 * 89.99787 * 18 17 16 22 22 C 1.46503 * 120.00342 * 65.00484 * 21 18 17 23 23 O 1.34219 * 109.12619 * 0.24124 * 17 16 15 24 24 C 1.33651 * 110.90793 * 359.58857 * 23 17 16 25 25 C 1.50699 * 125.80143 * 180.13024 * 24 23 17 26 26 H 1.08999 * 109.46796 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46754 * 299.99763 * 1 2 3 28 28 H 1.08996 * 109.47338 * 60.00096 * 1 2 3 29 29 H 1.09009 * 109.46952 * 240.00741 * 2 1 3 30 30 H 1.08993 * 109.47746 * 120.00537 * 2 1 3 31 31 H 1.09002 * 109.46712 * 29.99540 * 4 3 2 32 32 H 1.08999 * 109.47148 * 149.99991 * 4 3 2 33 33 H 0.97005 * 120.00436 * 180.02562 * 8 7 5 34 34 H 1.07993 * 127.02662 * 0.02562 * 16 15 13 35 35 H 0.97001 * 120.00275 * 244.99865 * 21 18 17 36 36 H 1.08998 * 109.47445 * 179.97438 * 22 21 18 37 37 H 1.09001 * 109.46846 * 299.99965 * 22 21 18 38 38 H 1.08997 * 109.47261 * 59.99217 * 22 21 18 39 39 H 1.09000 * 109.47065 * 270.32084 * 25 24 23 40 40 H 1.09001 * 109.47118 * 30.32366 * 25 24 23 41 41 H 1.09000 * 109.46723 * 150.32662 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1619 2.1075 -1.2642 5 6 3.5459 1.8845 -1.8172 6 1 4.2482 1.2637 -1.2809 7 6 3.9153 2.4725 -3.0085 8 7 3.0599 3.2281 -3.6618 9 14 5.6311 2.1968 -3.6936 10 1 5.6267 0.9995 -4.5723 11 1 6.0472 3.3860 -4.4794 12 1 6.5832 1.9853 -2.5738 13 6 2.3355 1.9839 1.1630 14 8 2.6400 3.1612 1.1746 15 6 2.3134 1.2159 2.4208 16 6 3.0117 -0.0466 2.7037 17 6 2.6971 -0.3667 3.9682 18 16 3.2624 -1.7950 4.8313 19 8 2.3139 -2.0440 5.8597 20 8 3.6036 -2.7541 3.8399 21 7 4.6760 -1.3825 5.5889 22 6 4.6697 -0.3769 6.6543 23 8 1.8785 0.5718 4.4687 24 6 1.6404 1.5279 3.5657 25 6 0.7706 2.7407 3.7744 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 1.4225 1.7440 -1.9780 32 1 2.0070 3.1724 -1.0911 33 1 3.3195 3.6415 -4.5001 34 1 3.6478 -0.6028 2.0311 35 1 5.5082 -1.8066 5.3273 36 1 5.6836 -0.2395 7.0302 37 1 4.2969 0.5683 6.2596 38 1 4.0239 -0.7116 7.4660 39 1 -0.2547 2.5061 3.4887 40 1 0.7979 3.0310 4.8247 41 1 1.1398 3.5624 3.1606 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083674291.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:27 Heat of formation + Delta-G solvation = -90.050583 kcal Electronic energy + Delta-G solvation = -26950.953002 eV Core-core repulsion = 22960.254107 eV Total energy + Delta-G solvation = -3990.698896 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.70664 -38.91830 -37.58382 -36.22118 -35.39586 -35.38877 -33.34761 -32.61312 -32.26464 -30.13009 -27.96871 -26.80173 -26.38527 -23.92523 -23.17290 -22.12782 -21.26436 -20.18119 -19.14258 -18.00052 -17.52235 -16.86902 -16.48788 -16.34091 -15.95208 -15.68001 -15.40716 -15.06481 -14.37786 -14.23027 -14.09851 -13.69119 -13.35969 -13.26537 -13.25239 -13.15693 -12.87893 -12.47779 -12.37116 -12.36127 -12.24355 -12.06354 -12.00744 -11.69415 -11.60528 -11.26697 -10.95270 -10.79379 -10.63744 -10.19186 -10.12466 -9.93100 -9.70013 -9.25252 -8.95770 -8.48051 -7.75516 -6.09380 -4.14617 -0.07734 0.98419 1.80020 2.47677 2.80168 3.27161 3.28613 3.33790 3.37417 3.40438 3.85664 4.19579 4.40468 4.50635 4.64897 4.70164 5.03988 5.09410 5.18115 5.24660 5.28060 5.32737 5.36355 5.38389 5.40998 5.47282 5.63713 5.77232 5.85041 6.03508 6.07746 6.22254 6.47438 6.48773 6.67152 7.00930 7.37046 7.45609 7.86538 8.16717 8.29810 8.79747 8.96214 9.50640 10.98674 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.014874 B = 0.003637 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.980489 B = 7696.470269 C = 8284.406636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.099 3.901 3 N -0.584 5.584 4 C 0.246 3.754 5 C -0.530 4.530 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.578 3.422 14 O -0.535 6.535 15 C -0.230 4.230 16 C -0.046 4.046 17 C -0.590 4.590 18 S 2.730 3.270 19 O -0.940 6.940 20 O -0.937 6.937 21 N -1.114 6.114 22 C 0.082 3.918 23 O -0.125 6.125 24 C 0.090 3.910 25 C -0.087 4.087 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.035 0.965 32 H 0.046 0.954 33 H 0.264 0.736 34 H 0.175 0.825 35 H 0.422 0.578 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.260 -8.280 19.386 21.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.025 4.025 3 N -0.315 5.315 4 C 0.127 3.873 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.364 3.636 14 O -0.413 6.413 15 C -0.235 4.235 16 C -0.068 4.068 17 C -0.718 4.718 18 S 2.811 3.189 19 O -0.930 6.930 20 O -0.927 6.927 21 N -0.875 5.875 22 C -0.064 4.064 23 O -0.020 6.020 24 C 0.034 3.966 25 C -0.144 4.144 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.192 0.808 35 H 0.257 0.743 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.833 -8.210 19.551 21.284 hybrid contribution 1.539 0.325 -1.217 1.989 sum -0.294 -7.884 18.334 19.959 Atomic orbital electron populations 1.22161 0.96492 1.01559 1.02227 1.21577 0.93974 0.84066 1.02854 1.48180 1.62050 1.13553 1.07702 1.19344 0.96987 0.93151 0.77812 1.21421 0.98450 1.30839 1.06166 0.92434 1.24925 0.97589 0.94809 0.96649 1.69927 1.35061 1.31956 1.16248 0.86486 0.84229 0.77702 0.78947 1.20550 1.21040 1.19914 1.17076 0.78309 0.86139 0.82080 1.90769 1.48822 1.15456 1.86265 1.21730 1.06206 0.98286 0.97308 1.23056 0.96329 0.93469 0.93904 1.35397 1.12152 1.15579 1.08686 1.01397 0.72827 0.71631 0.73037 1.93601 1.60504 1.82564 1.56283 1.93675 1.83443 1.54658 1.60933 1.55313 1.26710 1.55717 1.49775 1.21552 1.04469 0.90575 0.89808 1.83842 1.51854 1.27198 1.39135 1.23215 0.96301 0.90375 0.86707 1.20657 0.97732 0.91147 1.04820 0.92032 0.93263 0.91853 0.89797 0.91373 0.94690 0.93570 0.92641 0.80804 0.74318 0.89598 0.91851 0.90990 0.88899 0.89522 0.87291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 10.24 37.16 0.38 -2.06 16 2 C 0.10 1.70 6.08 -4.04 -0.02 1.68 16 3 N -0.58 -12.51 2.46 -176.34 -0.43 -12.94 16 4 C 0.25 6.35 5.23 -5.19 -0.03 6.32 16 5 C -0.53 -14.85 9.39 -34.44 -0.32 -15.17 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.20 13.28 55.43 0.74 -25.46 16 9 Si 0.90 21.64 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.58 12.29 7.27 -12.54 -0.09 12.20 16 14 O -0.53 -13.25 15.88 5.27 0.08 -13.17 16 15 C -0.23 -3.93 5.14 -103.27 -0.53 -4.46 16 16 C -0.05 -0.68 8.73 -37.45 -0.33 -1.01 16 17 C -0.59 -7.71 7.29 29.30 0.21 -7.50 16 18 S 2.73 29.81 5.89 -107.50 -0.63 29.18 16 19 O -0.94 -12.53 17.74 -57.29 -1.02 -13.55 16 20 O -0.94 -12.16 17.82 -57.17 -1.02 -13.18 16 21 N -1.11 -8.21 6.19 -16.63 -0.10 -8.31 16 22 C 0.08 0.50 11.14 59.85 0.67 1.17 16 23 O -0.13 -1.71 10.52 7.65 0.08 -1.63 16 24 C 0.09 1.30 7.37 -34.97 -0.26 1.04 16 25 C -0.09 -0.99 10.24 36.01 0.37 -0.62 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 1.45 8.11 -51.92 -0.42 1.03 16 30 H 0.07 1.05 4.70 -51.93 -0.24 0.81 16 31 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 32 H 0.05 1.34 7.35 -51.93 -0.38 0.95 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.17 2.33 7.87 -52.49 -0.41 1.92 16 35 H 0.42 2.16 8.96 -34.47 -0.31 1.85 16 36 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.11 1.43 7.25 -51.93 -0.38 1.05 16 LS Contribution 367.73 15.07 5.54 5.54 Total: -1.00 -36.93 367.73 -7.32 -44.26 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -5.49 Total: -0.63 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -0.05 Total: -6.74 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.20 Total: -46.71 kcal Atomic # 8 Polarization: -39.65 SS G_CDS: -1.87 Total: -41.52 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 29.81 SS G_CDS: -0.63 Total: 29.18 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.93 -7.32 -44.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083674291.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.794 kcal (2) G-P(sol) polarization free energy of solvation -36.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds