Wall clock time and date at job start Tue Mar 31 2020 04:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 S 1.65599 * 119.99794 * 2 1 4 4 O 1.42106 * 106.40117 * 178.54661 * 3 2 1 5 5 O 1.42094 * 106.40602 * 311.46640 * 3 2 1 6 6 C 1.76202 * 107.21926 * 65.00845 * 3 2 1 7 7 C 1.37849 * 119.94203 * 114.71914 * 6 3 2 8 8 C 1.39638 * 119.87922 * 179.77272 * 7 6 3 9 9 C 1.47723 * 120.11850 * 180.25263 * 8 7 6 10 10 O 1.21567 * 119.99985 * 320.96508 * 9 8 7 11 11 N 1.34777 * 119.99692 * 140.96602 * 9 8 7 12 12 C 1.46503 * 120.00053 * 4.84741 * 11 9 8 13 13 C 1.46501 * 120.00134 * 184.85355 * 11 9 8 14 14 C 1.50704 * 109.47147 * 89.99284 * 13 11 9 15 15 H 1.07997 * 120.00060 * 0.02562 * 14 13 11 16 16 C 1.37879 * 119.99893 * 179.97438 * 14 13 11 17 17 N 1.31513 * 119.99779 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 120.00123 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.46894 * 90.00248 * 18 16 14 20 20 H 1.48500 * 109.47601 * 210.00017 * 18 16 14 21 21 H 1.48503 * 109.47345 * 330.00706 * 18 16 14 22 22 C 1.39672 * 119.76287 * 0.50452 * 8 7 6 23 23 C 1.37818 * 119.87801 * 359.75201 * 22 8 7 24 24 C 1.38633 * 119.93741 * 294.99825 * 6 3 2 25 25 F 1.35103 * 119.88029 * 359.97438 * 24 6 3 26 26 H 1.08992 * 109.47546 * 59.99215 * 1 2 3 27 27 H 1.08998 * 109.47111 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46504 * 299.99718 * 1 2 3 29 29 H 0.96997 * 119.99878 * 180.02562 * 2 1 3 30 30 H 1.08002 * 120.06241 * 0.02562 * 7 6 3 31 31 H 1.08997 * 109.46723 * 85.70707 * 12 11 9 32 32 H 1.09001 * 109.46895 * 205.70027 * 12 11 9 33 33 H 1.08997 * 109.47193 * 325.70155 * 12 11 9 34 34 H 1.08999 * 109.47194 * 210.00029 * 13 11 9 35 35 H 1.08999 * 109.46683 * 330.00078 * 13 11 9 36 36 H 0.97004 * 120.00113 * 179.97438 * 17 16 14 37 37 H 1.07996 * 120.05954 * 179.73000 * 22 8 7 38 38 H 1.07997 * 119.93744 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 3.6738 1.1003 0.0346 5 8 1.7119 2.2330 -1.0214 6 6 1.9379 2.2414 1.5255 7 6 2.9437 2.4469 2.4455 8 6 2.6618 3.0910 3.6520 9 6 3.7367 3.3189 4.6393 10 8 4.5809 2.4645 4.8270 11 7 3.7815 4.4742 5.3321 12 6 2.7067 5.4588 5.1846 13 6 4.9049 4.7454 6.2325 14 6 5.9983 5.4514 5.4728 15 1 5.8692 5.6760 4.4244 16 6 7.1632 5.8115 6.1167 17 7 7.3202 5.5384 7.3935 18 14 8.5183 6.6872 5.1754 19 1 8.3106 8.1553 5.2601 20 1 9.8357 6.3389 5.7654 21 1 8.4857 6.2640 3.7523 22 6 1.3589 3.5143 3.9241 23 6 0.3599 3.2990 2.9995 24 6 0.6464 2.6635 1.8006 25 9 -0.3366 2.4551 0.8976 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 1.9500 -0.8400 -0.0004 30 1 3.9486 2.1140 2.2319 31 1 1.8939 5.2144 5.8684 32 1 3.0901 6.4525 5.4164 33 1 2.3368 5.4421 4.1595 34 1 4.5675 5.3766 7.0545 35 1 5.2873 3.8051 6.6296 36 1 8.1398 5.7914 7.8464 37 1 1.1347 4.0090 4.8576 38 1 -0.6480 3.6256 3.2091 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084181068.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:27 Heat of formation + Delta-G solvation = -104.480022 kcal Electronic energy + Delta-G solvation = -26301.257215 eV Core-core repulsion = 22186.472307 eV Total energy + Delta-G solvation = -4114.784908 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.69621 -40.15140 -38.01146 -37.41245 -36.07401 -35.31856 -35.13147 -32.84342 -31.78912 -31.04452 -27.87807 -26.36787 -26.24672 -24.17108 -23.86161 -22.44610 -20.22469 -19.41420 -18.29967 -17.94482 -17.51536 -17.00907 -16.80408 -16.61043 -16.06258 -15.78798 -15.46644 -14.90924 -14.56242 -14.51809 -14.44609 -14.03959 -13.90655 -13.64975 -13.21554 -12.83474 -12.71231 -12.46855 -12.30870 -12.23238 -12.19084 -12.13617 -11.86342 -11.81792 -11.27317 -11.04865 -10.95236 -10.65204 -10.23189 -10.00930 -9.82342 -9.71645 -9.32656 -9.04556 -8.49797 -7.84012 -6.11288 -4.16859 0.04406 0.30377 0.69516 2.58009 2.82209 3.27666 3.34538 3.36236 3.40017 3.45414 3.56603 3.78107 4.06968 4.37291 4.40226 4.59509 4.68067 4.70643 4.91041 5.10392 5.19278 5.23946 5.34494 5.39499 5.43319 5.49041 5.54439 5.58829 5.69828 5.92076 6.04906 6.31639 6.57793 6.89637 7.30139 7.37728 7.84246 8.12874 8.17157 8.71941 8.90227 9.48872 10.96821 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.018915 B = 0.003347 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.983299 B = 8364.707595 C = 9119.269638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -1.117 6.117 3 S 2.700 3.300 4 O -0.947 6.947 5 O -0.945 6.945 6 C -0.720 4.720 7 C 0.054 3.946 8 C -0.139 4.139 9 C 0.546 3.454 10 O -0.527 6.527 11 N -0.591 5.591 12 C 0.073 3.927 13 C 0.244 3.756 14 C -0.533 4.533 15 H 0.059 0.941 16 C 0.063 3.937 17 N -0.893 5.893 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.284 1.284 21 H -0.273 1.273 22 C -0.017 4.017 23 C -0.175 4.175 24 C 0.196 3.804 25 F -0.120 7.120 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.421 0.579 30 H 0.163 0.837 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.036 0.964 35 H 0.048 0.952 36 H 0.265 0.735 37 H 0.156 0.844 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.596 -7.881 -10.791 23.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.878 5.878 3 S 2.786 3.214 4 O -0.937 6.937 5 O -0.935 6.935 6 C -0.805 4.805 7 C 0.035 3.965 8 C -0.144 4.144 9 C 0.331 3.669 10 O -0.404 6.404 11 N -0.322 5.322 12 C -0.071 4.071 13 C 0.126 3.874 14 C -0.571 4.571 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.532 5.532 18 Si 0.727 3.273 19 H -0.206 1.206 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.036 4.036 23 C -0.194 4.194 24 C 0.176 3.824 25 F -0.098 7.098 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.256 0.744 30 H 0.181 0.819 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.174 0.826 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -18.636 -7.808 -11.177 23.091 hybrid contribution 0.349 0.346 0.182 0.524 sum -18.287 -7.462 -10.996 22.605 Atomic orbital electron populations 1.21812 0.78277 1.04266 1.02774 1.55293 1.16328 1.24345 1.91837 1.01924 0.73017 0.72945 0.73532 1.93637 1.30211 1.83156 1.86674 1.93620 1.78662 1.68296 1.52917 1.30900 0.99495 1.23835 1.26289 1.20954 0.98737 0.87720 0.89133 1.20505 0.95168 1.02011 0.96704 1.17938 0.84442 0.83172 0.81322 1.90800 1.39826 1.43660 1.66106 1.48117 1.24242 1.16074 1.43798 1.22018 0.90360 0.94501 1.00174 1.19409 0.82117 0.97938 0.87978 1.21422 1.00908 1.38070 0.96747 0.92298 1.24931 0.98213 0.95875 0.94956 1.69926 1.27220 1.46774 1.09260 0.86471 0.81119 0.79532 0.80188 1.20581 1.20985 1.19750 1.21954 0.91059 0.91637 0.98940 1.21161 1.01581 1.03370 0.93283 1.17185 0.83322 0.94826 0.87111 1.91557 1.60636 1.91739 1.65888 0.91052 0.89956 0.91564 0.74444 0.81917 0.93220 0.90058 0.92047 0.94569 0.93376 0.92586 0.82629 0.83143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.50 9.91 59.85 0.59 1.09 16 2 N -1.12 -9.25 6.19 -16.63 -0.10 -9.35 16 3 S 2.70 33.03 5.48 -107.50 -0.59 32.44 16 4 O -0.95 -14.23 16.96 -57.17 -0.97 -15.19 16 5 O -0.95 -13.74 17.14 -57.17 -0.98 -14.72 16 6 C -0.72 -9.15 5.89 -39.58 -0.23 -9.38 16 7 C 0.05 0.82 9.13 -39.20 -0.36 0.46 16 8 C -0.14 -2.17 5.23 -104.96 -0.55 -2.72 16 9 C 0.55 11.15 7.35 -12.38 -0.09 11.06 16 10 O -0.53 -13.03 16.46 5.31 0.09 -12.94 16 11 N -0.59 -12.00 2.86 -184.12 -0.53 -12.52 16 12 C 0.07 1.06 8.88 59.85 0.53 1.59 16 13 C 0.24 6.17 5.18 -5.19 -0.03 6.14 16 14 C -0.53 -14.82 9.39 -34.44 -0.32 -15.14 16 15 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -26.06 13.29 55.43 0.74 -25.33 16 18 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 C -0.02 -0.20 7.56 -39.20 -0.30 -0.49 16 23 C -0.17 -1.67 10.01 -39.57 -0.40 -2.07 16 24 C 0.20 2.17 6.66 -39.27 -0.26 1.91 16 25 F -0.12 -1.20 12.92 2.25 0.03 -1.17 16 26 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.43 5.39 -51.93 -0.28 0.15 16 29 H 0.42 2.57 8.96 -34.47 -0.31 2.26 16 30 H 0.16 2.60 7.32 -52.49 -0.38 2.21 16 31 H 0.05 0.55 6.90 -51.93 -0.36 0.20 16 32 H 0.08 1.22 8.04 -51.93 -0.42 0.80 16 33 H 0.06 0.76 5.81 -51.93 -0.30 0.46 16 34 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 35 H 0.05 1.37 7.36 -51.93 -0.38 0.99 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.16 1.42 5.31 -52.49 -0.28 1.15 16 38 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 336.37 15.07 5.07 5.07 Total: -1.00 -36.57 336.37 -7.72 -44.29 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -3.94 Total: -1.35 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -1.51 Total: -5.88 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: 0.11 Total: -47.20 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -1.86 Total: -42.86 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.03 Total: -1.17 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 33.03 SS G_CDS: -0.59 Total: 32.44 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.57 -7.72 -44.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084181068.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.190 kcal (2) G-P(sol) polarization free energy of solvation -36.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds