Wall clock time and date at job start Tue Mar 31 2020 05:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47595 * 2 1 4 4 C 1.36958 * 120.00192 * 96.93121 * 3 2 1 5 5 H 1.07996 * 120.00111 * 159.93608 * 4 3 2 6 6 C 1.38984 * 120.00062 * 339.94307 * 4 3 2 7 7 N 1.31402 * 120.00007 * 357.39860 * 6 4 3 8 8 Si 1.86801 * 120.00014 * 177.39374 * 6 4 3 9 9 H 1.48507 * 109.46783 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46792 * 119.99734 * 8 6 4 11 11 H 1.48492 * 109.47606 * 240.00162 * 8 6 4 12 12 C 1.34778 * 119.99632 * 276.94254 * 3 2 1 13 13 O 1.21647 * 119.99926 * 184.56682 * 12 3 2 14 14 C 1.47296 * 119.99914 * 4.55632 * 12 3 2 15 15 C 1.47031 * 127.20130 * 311.85491 * 14 12 3 16 16 C 1.34173 * 105.95884 * 180.02562 * 15 14 12 17 17 S 1.76197 * 125.42719 * 179.97438 * 16 15 14 18 18 O 1.42101 * 106.40269 * 336.45551 * 17 16 15 19 19 O 1.42099 * 106.40392 * 203.53866 * 17 16 15 20 20 N 1.65598 * 107.22090 * 89.99767 * 17 16 15 21 21 C 1.46498 * 120.00302 * 89.99921 * 20 17 16 22 22 C 1.46502 * 119.99781 * 270.00419 * 20 17 16 23 23 O 1.34216 * 109.14461 * 0.22487 * 16 15 14 24 24 C 1.33677 * 110.91217 * 359.61392 * 23 16 15 25 25 C 1.50703 * 125.81200 * 180.13150 * 24 23 16 26 26 H 1.09003 * 109.47027 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46703 * 300.00117 * 1 2 3 28 28 H 1.08997 * 109.46705 * 59.99843 * 1 2 3 29 29 H 1.08998 * 109.47082 * 239.99557 * 2 1 3 30 30 H 1.09007 * 109.46839 * 120.00034 * 2 1 3 31 31 H 0.97004 * 119.99834 * 179.97438 * 7 6 4 32 32 H 1.07997 * 127.02233 * 359.97438 * 15 14 12 33 33 H 1.08999 * 109.47034 * 270.00287 * 21 20 17 34 34 H 1.08999 * 109.47183 * 150.00076 * 21 20 17 35 35 H 1.08998 * 109.46892 * 29.99765 * 21 20 17 36 36 H 1.09004 * 109.46864 * 269.99159 * 22 20 17 37 37 H 1.08994 * 109.47415 * 29.99446 * 22 20 17 38 38 H 1.09004 * 109.46926 * 149.99955 * 22 20 17 39 39 H 1.08993 * 109.47229 * 270.29584 * 25 24 23 40 40 H 1.09006 * 109.46713 * 30.29466 * 25 24 23 41 41 H 1.08992 * 109.46870 * 150.29080 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.3817 1.9791 1.1774 5 1 3.0289 2.8436 1.1668 6 6 1.9176 1.4732 2.3859 7 7 1.0895 0.4530 2.3964 8 14 2.4711 2.2436 3.9951 9 1 3.3967 3.3699 3.7121 10 1 1.2870 2.7504 4.7342 11 1 3.1691 1.2235 4.8181 12 6 2.1101 2.0635 -1.1587 13 8 2.5930 3.1799 -1.1706 14 6 1.6257 1.4572 -2.4107 15 6 1.9135 0.1058 -2.9135 16 6 1.2619 0.0003 -4.0816 17 16 1.2581 -1.4199 -5.1244 18 8 2.4379 -2.1486 -4.8142 19 8 0.9521 -0.9566 -6.4324 20 7 -0.0149 -2.3694 -4.6549 21 6 -1.3322 -2.1843 -5.2686 22 6 0.1763 -3.3944 -3.6258 23 8 0.6180 1.1510 -4.3319 24 6 0.8162 2.0328 -3.3469 25 6 0.2477 3.4270 -3.2839 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 0.7659 0.0997 3.2399 32 1 2.5252 -0.6477 -2.4398 33 1 -1.9014 -1.4537 -4.6938 34 1 -1.8656 -3.1348 -5.2777 35 1 -1.2097 -1.8265 -6.2909 36 1 0.4661 -4.3333 -4.0976 37 1 0.9594 -3.0766 -2.9375 38 1 -0.7547 -3.5359 -3.0767 39 1 0.9372 4.1225 -3.7624 40 1 -0.7113 3.4521 -3.8015 41 1 0.1060 3.7148 -2.2422 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084533949.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:49 Heat of formation + Delta-G solvation = -62.825683 kcal Electronic energy + Delta-G solvation = -27704.871192 eV Core-core repulsion = 23715.352857 eV Total energy + Delta-G solvation = -3989.518335 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.30009 -38.47032 -37.44351 -36.37897 -36.01307 -35.20190 -32.94211 -31.94979 -31.52299 -29.49784 -28.32003 -27.20863 -25.19701 -24.87626 -23.06087 -21.84109 -21.32212 -20.02378 -18.67428 -17.79831 -17.54042 -16.81379 -16.36130 -16.15958 -15.78629 -15.40597 -14.78333 -14.64582 -14.43751 -14.09470 -13.76494 -13.37943 -13.29381 -12.92425 -12.82499 -12.78119 -12.70350 -12.61816 -12.55006 -12.25473 -11.96668 -11.88413 -11.81389 -11.75329 -11.42965 -11.26924 -11.15267 -10.87111 -10.41115 -10.25301 -10.02195 -9.63618 -9.38278 -8.99617 -8.71943 -8.49909 -7.77369 -6.37342 -3.99039 0.10320 1.32308 2.20486 2.68370 3.05637 3.10384 3.18766 3.25512 3.54410 3.86023 4.06958 4.32034 4.54333 4.71950 4.87370 5.01847 5.09617 5.14566 5.17366 5.39640 5.49205 5.56099 5.57378 5.58945 5.68302 5.69208 5.78848 5.80463 6.16106 6.19028 6.22971 6.44000 6.54781 6.61355 6.71577 7.07253 7.25043 7.41282 7.65250 8.01427 8.40900 9.04490 9.29125 9.85323 10.56488 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.017790 B = 0.004115 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.549333 B = 6803.282750 C = 7580.230090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.114 3.886 3 N -0.427 5.427 4 C -0.295 4.295 5 H 0.103 0.897 6 C 0.026 3.974 7 N -0.875 5.875 8 Si 0.932 3.068 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.280 1.280 12 C 0.505 3.495 13 O -0.585 6.585 14 C -0.200 4.200 15 C -0.056 4.056 16 C -0.595 4.595 17 S 2.727 3.273 18 O -0.935 6.935 19 O -0.944 6.944 20 N -1.000 6.000 21 C 0.083 3.917 22 C 0.089 3.911 23 O -0.129 6.129 24 C 0.072 3.928 25 C -0.073 4.073 26 H 0.035 0.965 27 H 0.091 0.909 28 H 0.018 0.982 29 H 0.031 0.969 30 H 0.113 0.887 31 H 0.267 0.733 32 H 0.171 0.829 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.069 -7.900 -10.348 14.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.009 4.009 3 N -0.144 5.144 4 C -0.423 4.423 5 H 0.121 0.879 6 C -0.176 4.176 7 N -0.516 5.516 8 Si 0.759 3.241 9 H -0.192 1.192 10 H -0.206 1.206 11 H -0.206 1.206 12 C 0.293 3.707 13 O -0.471 6.471 14 C -0.205 4.205 15 C -0.077 4.077 16 C -0.724 4.724 17 S 2.810 3.190 18 O -0.925 6.925 19 O -0.934 6.934 20 N -0.840 5.840 21 C -0.062 4.062 22 C -0.056 4.056 23 O -0.024 6.024 24 C 0.017 3.983 25 C -0.129 4.129 26 H 0.054 0.946 27 H 0.109 0.891 28 H 0.037 0.963 29 H 0.049 0.951 30 H 0.131 0.869 31 H 0.078 0.922 32 H 0.188 0.812 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.535 -7.597 -11.042 14.911 hybrid contribution -0.009 0.442 1.715 1.771 sum -6.544 -7.156 -9.327 13.454 Atomic orbital electron populations 1.22111 0.96712 0.99619 1.01531 1.21740 0.94700 0.83520 1.00893 1.43661 1.54250 1.11216 1.05282 1.19846 1.27169 1.13198 0.82067 0.87893 1.25379 0.95699 0.96690 0.99799 1.70028 1.30983 1.23880 1.26729 0.85749 0.78524 0.79071 0.80744 1.19216 1.20643 1.20627 1.16916 0.85706 0.85627 0.82416 1.90631 1.50029 1.20212 1.86230 1.21775 1.04910 0.94248 0.99604 1.23160 0.95849 0.96796 0.91937 1.35319 1.14094 1.06393 1.16590 1.01454 0.72823 0.71847 0.72841 1.93644 1.44553 1.69219 1.85102 1.93563 1.84217 1.81288 1.34315 1.57322 1.25299 1.48014 1.53360 1.21663 0.82911 1.02945 0.98728 1.21600 1.03235 0.90588 0.90168 1.83790 1.57829 1.19311 1.41509 1.23122 0.96520 0.92771 0.85919 1.20452 1.00749 0.86454 1.05251 0.94569 0.89085 0.96311 0.95143 0.86903 0.92230 0.81182 0.92314 0.90217 0.89677 0.91819 0.90566 0.90418 0.88957 0.90364 0.88257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.55 37.16 0.35 -2.56 16 2 C 0.11 2.52 4.98 -4.04 -0.02 2.50 16 3 N -0.43 -10.77 2.64 -116.07 -0.31 -11.07 16 4 C -0.29 -7.90 9.39 -14.99 -0.14 -8.04 16 5 H 0.10 2.90 7.31 -52.49 -0.38 2.52 16 6 C 0.03 0.65 5.28 -17.46 -0.09 0.56 16 7 N -0.88 -21.34 7.87 55.50 0.44 -20.91 16 8 Si 0.93 19.86 29.55 -169.99 -5.02 14.83 16 9 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 10 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 11 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 12 C 0.51 12.60 7.10 -12.58 -0.09 12.51 16 13 O -0.59 -16.21 16.61 5.24 0.09 -16.13 16 14 C -0.20 -4.20 4.60 -103.28 -0.47 -4.68 16 15 C -0.06 -1.01 8.96 -37.45 -0.34 -1.35 16 16 C -0.59 -9.84 7.32 29.30 0.21 -9.63 16 17 S 2.73 38.05 5.80 -107.50 -0.62 37.43 16 18 O -0.93 -14.53 16.89 -57.17 -0.97 -15.50 16 19 O -0.94 -14.89 16.62 -57.29 -0.95 -15.85 16 20 N -1.00 -10.56 3.58 -129.20 -0.46 -11.03 16 21 C 0.08 0.69 10.66 59.85 0.64 1.32 16 22 C 0.09 0.78 10.29 59.85 0.62 1.39 16 23 O -0.13 -2.24 10.52 7.59 0.08 -2.16 16 24 C 0.07 1.34 7.38 -34.93 -0.26 1.08 16 25 C -0.07 -1.10 10.10 36.01 0.36 -0.74 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.09 2.12 6.20 -51.93 -0.32 1.80 16 28 H 0.02 0.37 7.28 -51.93 -0.38 -0.01 16 29 H 0.03 0.60 4.28 -51.93 -0.22 0.37 16 30 H 0.11 2.66 5.90 -51.93 -0.31 2.36 16 31 H 0.27 6.17 8.31 -40.82 -0.34 5.83 16 32 H 0.17 2.81 6.67 -52.49 -0.35 2.46 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.46 8.07 -51.93 -0.42 0.04 16 35 H 0.08 0.73 7.02 -51.93 -0.36 0.36 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.70 7.79 -51.93 -0.40 0.29 16 38 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 39 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.10 1.64 7.93 -51.93 -0.41 1.23 16 LS Contribution 352.55 15.07 5.31 5.31 Total: -1.00 -33.18 352.55 -6.87 -40.06 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.23 Total: 2.63 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: 0.78 Total: -7.62 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: -0.33 Total: -43.01 kcal Atomic # 8 Polarization: -47.88 SS G_CDS: -1.75 Total: -49.63 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: 38.05 SS G_CDS: -0.62 Total: 37.43 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.18 -6.87 -40.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084533949.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.770 kcal (2) G-P(sol) polarization free energy of solvation -33.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds