Wall clock time and date at job start Tue Mar 31 2020 05:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33657 * 125.80050 * 2 1 4 4 C 1.34220 * 110.90438 * 180.27159 * 3 2 1 5 5 S 1.76204 * 125.43406 * 179.76641 * 4 3 2 6 6 O 1.42100 * 106.40268 * 23.53745 * 5 4 3 7 7 O 1.42097 * 106.40133 * 156.46080 * 5 4 3 8 8 N 1.65607 * 107.21533 * 270.00161 * 5 4 3 9 9 C 1.46493 * 120.00220 * 90.00366 * 8 5 4 10 10 C 1.46497 * 119.99863 * 269.99911 * 8 5 4 11 11 C 1.34180 * 109.12674 * 359.76468 * 4 3 2 12 12 C 1.36415 * 125.80360 * 179.86586 * 2 1 3 13 13 C 1.47381 * 127.18947 * 0.02562 * 12 2 1 14 14 O 1.21615 * 120.00432 * 7.08666 * 13 12 2 15 15 N 1.34784 * 119.99752 * 187.09576 * 13 12 2 16 16 C 1.46495 * 120.00102 * 6.25273 * 15 13 12 17 17 C 1.46500 * 119.99495 * 186.26030 * 15 13 12 18 18 C 1.50699 * 109.46996 * 269.99243 * 17 15 13 19 19 H 1.08005 * 120.00049 * 0.02562 * 18 17 15 20 20 C 1.37875 * 120.00059 * 180.02562 * 18 17 15 21 21 N 1.31511 * 120.00157 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 120.00171 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.46822 * 59.99965 * 22 20 18 24 24 H 1.48493 * 109.47215 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46796 * 300.00276 * 22 20 18 26 26 H 1.09005 * 109.46556 * 270.13042 * 1 2 3 27 27 H 1.08993 * 109.47159 * 30.13140 * 1 2 3 28 28 H 1.08993 * 109.46962 * 150.13766 * 1 2 3 29 29 H 1.09003 * 109.46999 * 359.97438 * 9 8 5 30 30 H 1.09000 * 109.47420 * 119.99758 * 9 8 5 31 31 H 1.09003 * 109.47166 * 240.00069 * 9 8 5 32 32 H 1.08997 * 109.47290 * 89.99589 * 10 8 5 33 33 H 1.08996 * 109.47217 * 210.00018 * 10 8 5 34 34 H 1.09007 * 109.47436 * 330.00227 * 10 8 5 35 35 H 1.07995 * 127.01843 * 180.02562 * 11 4 3 36 36 H 1.08992 * 109.47751 * 275.86531 * 16 15 13 37 37 H 1.09012 * 109.46921 * 35.86554 * 16 15 13 38 38 H 1.09007 * 109.46979 * 155.85791 * 16 15 13 39 39 H 1.09007 * 109.46848 * 150.00042 * 17 15 13 40 40 H 1.08992 * 109.47482 * 29.99657 * 17 15 13 41 41 H 0.97005 * 120.00466 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5860 0.7390 -0.0059 5 16 4.9422 1.8638 -0.0139 6 8 4.4560 3.0826 0.5314 7 8 6.0515 1.1587 0.5259 8 7 5.3117 2.1749 -1.5980 9 6 4.6654 3.2891 -2.2957 10 6 6.2851 1.3359 -2.3014 11 6 3.6850 -0.5991 -0.0048 12 6 2.3051 -1.1064 0.0026 13 6 1.8740 -2.5157 0.0054 14 8 0.6967 -2.7919 -0.1244 15 7 2.7845 -3.4986 0.1519 16 6 4.1808 -3.1659 0.4451 17 6 2.3779 -4.8996 0.0179 18 6 1.9585 -5.4320 1.3639 19 1 1.9912 -4.7906 2.2323 20 6 1.5331 -6.7377 1.4868 21 7 1.4938 -7.5187 0.4295 22 14 1.0126 -7.3974 3.1552 23 1 -0.1286 -6.5983 3.6693 24 1 0.6017 -8.8178 3.0196 25 1 2.1517 -7.3003 4.1031 26 1 -0.3633 0.0023 1.0277 27 1 -0.3633 0.8887 -0.5158 28 1 -0.3633 -0.8912 -0.5117 29 1 3.9781 3.7935 -1.6165 30 1 5.4240 3.9942 -2.6354 31 1 4.1126 2.9083 -3.1546 32 1 5.7695 0.5008 -2.7755 33 1 6.7929 1.9286 -3.0622 34 1 7.0171 0.9540 -1.5898 35 1 4.5928 -1.1840 -0.0082 36 1 4.7044 -2.9439 -0.4846 37 1 4.2170 -2.2948 1.0994 38 1 4.6597 -4.0114 0.9390 39 1 3.2152 -5.4864 -0.3600 40 1 1.5415 -4.9703 -0.6774 41 1 1.1948 -8.4375 0.5160 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084586028.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:36 Heat of formation + Delta-G solvation = -68.112925 kcal Electronic energy + Delta-G solvation = -26816.848871 eV Core-core repulsion = 22827.101263 eV Total energy + Delta-G solvation = -3989.747607 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.70717 -38.83926 -37.67592 -36.58857 -36.22445 -35.09310 -33.37945 -32.46699 -32.05276 -28.51574 -28.17716 -27.37061 -26.03048 -25.07409 -23.77398 -22.33721 -21.17301 -20.11108 -18.87294 -17.92807 -17.48138 -16.64001 -16.56966 -16.40854 -16.02808 -15.73451 -15.22357 -14.84107 -14.76975 -14.42747 -14.14670 -13.69981 -13.42267 -13.26535 -13.06182 -13.01033 -12.79502 -12.71886 -12.50532 -12.47803 -12.31745 -12.19685 -12.02333 -11.97854 -11.60882 -11.51693 -11.14701 -10.94569 -10.59594 -10.20756 -10.03544 -9.68454 -9.61484 -9.18154 -8.98203 -8.46581 -7.74461 -6.07740 -4.12570 -0.13755 0.99130 1.65023 2.41080 2.76389 3.30508 3.30969 3.34875 3.38173 3.72454 3.89227 4.09082 4.35566 4.42205 4.52435 4.73034 4.91340 4.98250 4.99355 5.17925 5.18729 5.27200 5.37833 5.39443 5.40930 5.46329 5.48917 5.52578 5.57896 5.75656 5.95353 6.00674 6.11811 6.15340 6.67548 6.99209 7.34262 7.44599 7.87931 8.17880 8.28468 8.82110 8.97521 9.52509 11.00326 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.020565 B = 0.003163 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.206952 B = 8850.622124 C = 9311.460442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.110 3.890 3 O -0.126 6.126 4 C -0.595 4.595 5 S 2.725 3.275 6 O -0.939 6.939 7 O -0.932 6.932 8 N -0.999 5.999 9 C 0.084 3.916 10 C 0.078 3.922 11 C -0.064 4.064 12 C -0.243 4.243 13 C 0.576 3.424 14 O -0.534 6.534 15 N -0.591 5.591 16 C 0.070 3.930 17 C 0.247 3.753 18 C -0.527 4.527 19 H 0.057 0.943 20 C 0.062 3.938 21 N -0.896 5.896 22 Si 0.899 3.101 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.277 1.277 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.186 0.814 36 H 0.048 0.952 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.035 0.965 40 H 0.044 0.956 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.522 20.979 -7.158 23.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.053 3.947 3 O -0.021 6.021 4 C -0.724 4.724 5 S 2.808 3.192 6 O -0.929 6.929 7 O -0.922 6.922 8 N -0.839 5.839 9 C -0.061 4.061 10 C -0.067 4.067 11 C -0.085 4.085 12 C -0.248 4.248 13 C 0.363 3.637 14 O -0.414 6.414 15 N -0.322 5.322 16 C -0.074 4.074 17 C 0.129 3.871 18 C -0.566 4.566 19 H 0.076 0.924 20 C -0.140 4.140 21 N -0.534 5.534 22 Si 0.727 3.273 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.202 1.202 26 H 0.113 0.887 27 H 0.099 0.901 28 H 0.138 0.862 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.203 0.797 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.166 21.212 -6.597 23.667 hybrid contribution -0.556 -1.224 0.591 1.469 sum 7.610 19.988 -6.006 22.215 Atomic orbital electron populations 1.20794 0.82801 1.05741 1.05100 1.23434 0.94747 0.83586 0.92893 1.83849 1.13810 1.33743 1.70674 1.35575 0.98618 1.12178 1.25981 1.01576 0.72373 0.72859 0.72428 1.93589 1.81346 1.42393 1.75599 1.93643 1.47222 1.75402 1.75975 1.57294 1.53693 1.40905 1.32024 1.21656 0.98243 0.87885 0.98352 1.21711 0.91751 0.94629 0.98621 1.23845 0.99155 0.92445 0.93104 1.21763 0.92102 0.95729 1.15253 1.17003 0.85813 0.82773 0.78124 1.90732 1.16382 1.83175 1.51070 1.47975 1.07554 1.08723 1.67934 1.22173 0.83619 1.02191 0.99437 1.19356 0.96523 0.73357 0.97898 1.21383 1.44527 0.96453 0.94256 0.92436 1.24927 0.95349 0.96697 0.97051 1.69915 1.47319 1.07336 1.28870 0.86538 0.79149 0.77760 0.83861 1.20149 1.21146 1.20215 0.88658 0.90064 0.86230 0.89315 0.91148 0.91784 0.92179 0.90025 0.89428 0.79703 0.93396 0.91742 0.90042 0.94673 0.93765 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.13 9.97 36.01 0.36 -0.77 16 2 C 0.11 1.70 7.37 -34.96 -0.26 1.44 16 3 O -0.13 -1.82 10.52 7.63 0.08 -1.74 16 4 C -0.60 -8.03 7.32 29.30 0.21 -7.81 16 5 S 2.72 30.98 5.84 -107.50 -0.63 30.36 16 6 O -0.94 -12.77 16.58 -57.28 -0.95 -13.72 16 7 O -0.93 -11.94 16.42 -57.17 -0.94 -12.88 16 8 N -1.00 -8.13 3.58 -129.21 -0.46 -8.59 16 9 C 0.08 0.52 10.67 59.84 0.64 1.16 16 10 C 0.08 0.48 10.70 59.85 0.64 1.12 16 11 C -0.06 -0.93 8.56 -37.45 -0.32 -1.25 16 12 C -0.24 -4.25 6.06 -103.28 -0.63 -4.87 16 13 C 0.58 12.40 7.64 -12.54 -0.10 12.30 16 14 O -0.53 -13.09 14.47 5.26 0.08 -13.01 16 15 N -0.59 -12.79 2.86 -184.25 -0.53 -13.32 16 16 C 0.07 1.15 8.66 59.84 0.52 1.66 16 17 C 0.25 6.43 5.09 -5.19 -0.03 6.40 16 18 C -0.53 -14.98 9.39 -34.44 -0.32 -15.30 16 19 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 21 N -0.90 -26.39 13.29 55.43 0.74 -25.66 16 22 Si 0.90 21.89 29.54 -169.99 -5.02 16.86 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 26 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.12 1.75 6.37 -51.93 -0.33 1.42 16 29 H 0.09 0.61 6.91 -51.93 -0.36 0.25 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.32 8.07 -51.93 -0.42 -0.10 16 34 H 0.09 0.55 7.02 -51.92 -0.36 0.18 16 35 H 0.19 2.26 4.88 -52.49 -0.26 2.00 16 36 H 0.05 0.64 7.34 -51.93 -0.38 0.26 16 37 H 0.06 0.96 5.37 -51.92 -0.28 0.68 16 38 H 0.08 1.34 8.03 -51.93 -0.42 0.93 16 39 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 40 H 0.04 1.28 7.52 -51.93 -0.39 0.89 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 357.71 15.07 5.39 5.39 Total: -1.00 -36.59 357.71 -6.89 -43.48 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -5.27 Total: -2.91 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 0.62 Total: -4.25 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: -0.25 Total: -47.57 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -1.73 Total: -41.36 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 30.98 SS G_CDS: -0.63 Total: 30.36 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.59 -6.89 -43.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084586028.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.634 kcal (2) G-P(sol) polarization free energy of solvation -36.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds