Wall clock time and date at job start Tue Mar 31 2020 05:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.33658 * 125.80333 * 2 1 4 4 C 1.34211 * 110.91134 * 180.14785 * 3 2 1 5 5 S 1.76194 * 125.43767 * 179.81309 * 4 3 2 6 6 O 1.42098 * 106.40333 * 156.15164 * 5 4 3 7 7 O 1.42094 * 106.40727 * 23.23017 * 5 4 3 8 8 N 1.65606 * 107.22007 * 269.69067 * 5 4 3 9 9 C 1.46499 * 120.00003 * 89.99703 * 8 5 4 10 10 C 1.46502 * 119.99935 * 270.00200 * 8 5 4 11 11 C 1.34178 * 109.12079 * 359.54450 * 4 3 2 12 12 C 1.36416 * 125.80170 * 179.64607 * 2 1 3 13 13 C 1.47375 * 127.19451 * 0.03644 * 12 2 1 14 14 O 1.21609 * 119.99707 * 359.97438 * 13 12 2 15 15 N 1.34773 * 120.00221 * 179.97438 * 13 12 2 16 16 C 1.46497 * 120.00150 * 180.02562 * 15 13 12 17 17 H 1.09006 * 109.47023 * 324.99460 * 16 15 13 18 18 C 1.52995 * 109.47504 * 84.99485 * 16 15 13 19 19 C 1.50696 * 109.47168 * 204.99933 * 16 15 13 20 20 H 1.07994 * 120.00448 * 359.97438 * 19 16 15 21 21 C 1.37882 * 119.99920 * 179.97438 * 19 16 15 22 22 N 1.31522 * 119.99653 * 179.97438 * 21 19 16 23 23 Si 1.86798 * 119.99946 * 0.02562 * 21 19 16 24 24 H 1.48498 * 109.47235 * 90.00037 * 23 21 19 25 25 H 1.48511 * 109.46581 * 209.99603 * 23 21 19 26 26 H 1.48493 * 109.47204 * 329.99219 * 23 21 19 27 27 H 1.08998 * 109.47306 * 270.35622 * 1 2 3 28 28 H 1.08999 * 109.47522 * 30.35264 * 1 2 3 29 29 H 1.08996 * 109.47337 * 150.35401 * 1 2 3 30 30 H 1.09002 * 109.47391 * 270.00374 * 9 8 5 31 31 H 1.09001 * 109.46813 * 150.00430 * 9 8 5 32 32 H 1.09004 * 109.47041 * 30.00557 * 9 8 5 33 33 H 1.08994 * 109.47354 * 269.99742 * 10 8 5 34 34 H 1.09002 * 109.47278 * 29.99787 * 10 8 5 35 35 H 1.09006 * 109.46998 * 149.99308 * 10 8 5 36 36 H 1.08005 * 127.01764 * 180.22667 * 11 4 3 37 37 H 0.96996 * 119.99887 * 359.97438 * 15 13 12 38 38 H 1.08997 * 109.47598 * 179.97438 * 18 16 15 39 39 H 1.09001 * 109.47364 * 300.00535 * 18 16 15 40 40 H 1.09006 * 109.47001 * 59.99961 * 18 16 15 41 41 H 0.96997 * 119.99244 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5859 0.7391 -0.0032 5 16 4.9421 1.8639 -0.0091 6 8 6.0485 1.1613 0.5400 7 8 4.4530 3.0851 0.5280 8 7 5.3203 2.1677 -1.5925 9 6 4.6776 3.2785 -2.2989 10 6 6.2975 1.3254 -2.2868 11 6 3.6849 -0.5990 0.0046 12 6 2.3050 -1.1064 0.0068 13 6 1.8740 -2.5157 0.0148 14 8 0.6890 -2.7891 0.0162 15 7 2.7930 -3.5014 0.0205 16 6 2.3646 -4.9023 0.0278 17 1 1.4531 -5.0004 0.6175 18 6 2.0957 -5.3610 -1.4068 19 6 3.4488 -5.7560 0.6333 20 1 4.3655 -5.3008 0.9778 21 6 3.2705 -7.1185 0.7475 22 7 4.2170 -7.8636 1.2755 23 14 1.6852 -7.9061 0.1510 24 1 1.8316 -8.2953 -1.2746 25 1 1.3949 -9.1131 0.9663 26 1 0.5688 -6.9365 0.2874 27 1 -0.3634 0.0064 1.0276 28 1 -0.3634 0.8868 -0.5193 29 1 -0.3634 -0.8931 -0.5083 30 1 3.7628 2.9257 -2.7751 31 1 5.3560 3.6671 -3.0585 32 1 4.4359 4.0694 -1.5888 33 1 7.2952 1.7449 -2.1581 34 1 6.2702 0.3185 -1.8704 35 1 6.0540 1.2862 -3.3486 36 1 4.5928 -1.1839 0.0079 37 1 3.7382 -3.2833 0.0189 38 1 1.7774 -6.4035 -1.4014 39 1 1.3115 -4.7435 -1.8447 40 1 3.0072 -5.2629 -1.9965 41 1 4.0916 -8.8221 1.3554 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084589215.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:43 Heat of formation + Delta-G solvation = -82.865143 kcal Electronic energy + Delta-G solvation = -26546.931426 eV Core-core repulsion = 22556.544115 eV Total energy + Delta-G solvation = -3990.387312 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.77677 -38.96895 -37.67459 -36.59723 -36.23347 -35.16519 -33.32973 -32.49791 -32.11536 -29.97263 -28.52546 -27.37620 -25.25850 -25.10683 -23.75820 -21.99518 -20.80881 -19.91764 -19.31703 -18.67809 -17.88286 -16.89392 -16.56525 -16.46285 -15.97914 -15.71819 -15.34632 -14.91444 -14.81294 -14.32869 -14.14530 -13.72230 -13.52412 -13.37086 -13.13710 -13.01536 -12.99662 -12.94723 -12.76260 -12.47174 -12.36286 -12.24896 -12.08837 -11.96924 -11.86538 -11.65200 -11.36102 -10.86406 -10.24607 -10.17405 -9.80419 -9.62240 -9.39441 -9.29532 -9.10499 -8.80406 -8.24751 -6.24575 -4.27802 -0.16032 0.91750 1.51789 2.35998 2.70553 3.19629 3.29154 3.32213 3.35745 3.63979 3.81176 4.06118 4.27656 4.32276 4.42959 4.62980 4.83071 4.94336 4.97575 5.09863 5.18348 5.20560 5.35562 5.38201 5.38504 5.40832 5.48595 5.48857 5.84109 5.96312 6.04156 6.24450 6.30532 6.48559 6.59550 6.78602 7.11668 7.18858 7.44325 8.07059 8.43734 8.69250 8.80225 9.35248 10.87530 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.017726 B = 0.003234 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.213979 B = 8657.031571 C = 9477.913515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.112 3.888 3 O -0.125 6.125 4 C -0.589 4.589 5 S 2.724 3.276 6 O -0.928 6.928 7 O -0.939 6.939 8 N -1.000 6.000 9 C 0.081 3.919 10 C 0.088 3.912 11 C -0.051 4.051 12 C -0.248 4.248 13 C 0.578 3.422 14 O -0.552 6.552 15 N -0.691 5.691 16 C 0.237 3.763 17 H 0.051 0.949 18 C -0.161 4.161 19 C -0.538 4.538 20 H 0.081 0.919 21 C 0.079 3.921 22 N -0.890 5.890 23 Si 0.886 3.114 24 H -0.276 1.276 25 H -0.293 1.293 26 H -0.262 1.262 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.176 0.824 37 H 0.395 0.605 38 H 0.049 0.951 39 H 0.036 0.964 40 H 0.053 0.947 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.340 21.927 -9.125 23.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.055 3.945 3 O -0.019 6.019 4 C -0.717 4.717 5 S 2.806 3.194 6 O -0.918 6.918 7 O -0.929 6.929 8 N -0.840 5.840 9 C -0.064 4.064 10 C -0.057 4.057 11 C -0.073 4.073 12 C -0.253 4.253 13 C 0.364 3.636 14 O -0.433 6.433 15 N -0.338 5.338 16 C 0.134 3.866 17 H 0.069 0.931 18 C -0.219 4.219 19 C -0.576 4.576 20 H 0.099 0.901 21 C -0.125 4.125 22 N -0.527 5.527 23 Si 0.716 3.284 24 H -0.203 1.203 25 H -0.221 1.221 26 H -0.187 1.187 27 H 0.114 0.886 28 H 0.100 0.900 29 H 0.135 0.865 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.193 0.807 37 H 0.229 0.771 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.135 22.116 -8.368 23.647 hybrid contribution -0.553 -1.287 -0.660 1.549 sum -0.688 20.829 -9.028 22.712 Atomic orbital electron populations 1.20763 0.82805 1.05581 1.05108 1.23428 0.94759 0.83622 0.92709 1.83867 1.13811 1.33633 1.70597 1.35588 0.98605 1.12037 1.25423 1.01676 0.72401 0.72889 0.72391 1.93675 1.47205 1.75431 1.75525 1.93581 1.81258 1.42128 1.75922 1.57346 1.53522 1.40994 1.32146 1.21689 0.97891 0.88369 0.98424 1.21624 0.91449 0.94185 0.98469 1.23150 0.98532 0.92625 0.92988 1.21669 0.92225 0.95449 1.15933 1.17085 0.86140 0.83152 0.77262 1.90712 1.16512 1.83795 1.52299 1.46051 1.08878 1.07208 1.71637 1.19159 0.97601 0.76745 0.93100 0.93116 1.22455 1.00144 0.99761 0.99568 1.21023 1.02868 0.92008 1.41659 0.90118 1.24831 0.96503 0.96885 0.94275 1.69871 1.33034 1.06086 1.43711 0.86867 0.84458 0.78920 0.78189 1.20273 1.22084 1.18654 0.88552 0.90025 0.86515 0.92356 0.90063 0.89540 0.91571 0.90531 0.90446 0.80706 0.77114 0.93291 0.94506 0.92774 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 9.89 36.00 0.36 -0.62 16 2 C 0.11 1.58 7.37 -34.97 -0.26 1.32 16 3 O -0.12 -1.69 10.52 7.65 0.08 -1.61 16 4 C -0.59 -7.60 7.32 29.30 0.21 -7.38 16 5 S 2.72 30.67 5.80 -107.50 -0.62 30.05 16 6 O -0.93 -12.27 16.89 -57.18 -0.97 -13.23 16 7 O -0.94 -12.60 16.62 -57.29 -0.95 -13.55 16 8 N -1.00 -8.03 3.58 -129.20 -0.46 -8.49 16 9 C 0.08 0.49 10.66 59.85 0.64 1.13 16 10 C 0.09 0.55 10.29 59.85 0.62 1.16 16 11 C -0.05 -0.71 10.29 -37.45 -0.39 -1.09 16 12 C -0.25 -3.96 6.31 -103.28 -0.65 -4.61 16 13 C 0.58 11.13 7.78 -12.54 -0.10 11.03 16 14 O -0.55 -11.84 14.51 5.27 0.08 -11.76 16 15 N -0.69 -13.86 5.07 -56.03 -0.28 -14.15 16 16 C 0.24 5.60 2.15 -69.09 -0.15 5.45 16 17 H 0.05 1.31 6.63 -51.93 -0.34 0.97 16 18 C -0.16 -3.53 8.96 37.16 0.33 -3.19 16 19 C -0.54 -14.43 9.31 -34.44 -0.32 -14.75 16 20 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 21 C 0.08 2.20 5.45 -17.81 -0.10 2.10 16 22 N -0.89 -26.19 13.96 55.43 0.77 -25.42 16 23 Si 0.89 21.47 24.37 -169.99 -4.14 17.32 16 24 H -0.28 -6.45 6.87 56.52 0.39 -6.06 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.26 -6.28 6.53 56.52 0.37 -5.91 16 27 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.12 1.48 6.48 -51.93 -0.34 1.14 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.30 8.07 -51.93 -0.42 -0.11 16 32 H 0.09 0.55 7.02 -51.93 -0.36 0.19 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.48 7.79 -51.93 -0.40 0.08 16 35 H 0.08 0.33 8.07 -51.93 -0.42 -0.09 16 36 H 0.18 2.00 7.74 -52.48 -0.41 1.59 16 37 H 0.40 7.03 7.71 -40.82 -0.31 6.72 16 38 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 355.54 15.07 5.36 5.36 Total: -1.00 -35.36 355.54 -6.26 -41.62 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.32 Total: 3.33 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 0.20 Total: -9.46 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: 0.03 Total: -48.05 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -1.76 Total: -40.16 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.14 Total: 17.32 kcal Atomic # 16 Polarization: 30.67 SS G_CDS: -0.62 Total: 30.05 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.36 -6.26 -41.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084589215.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.242 kcal (2) G-P(sol) polarization free energy of solvation -35.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds