Wall clock time and date at job start Tue Mar 31 2020 05:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.33656 * 125.79664 * 2 1 4 4 C 1.34217 * 110.90126 * 180.13129 * 3 2 1 5 5 S 1.76204 * 125.43642 * 179.84636 * 4 3 2 6 6 O 1.42099 * 106.40137 * 156.15357 * 5 4 3 7 7 O 1.42109 * 106.39984 * 23.23406 * 5 4 3 8 8 N 1.65594 * 107.22029 * 269.69946 * 5 4 3 9 9 C 1.46499 * 120.00527 * 89.99701 * 8 5 4 10 10 C 1.46510 * 119.99562 * 269.99678 * 8 5 4 11 11 C 1.34177 * 109.12753 * 359.58423 * 4 3 2 12 12 C 1.36411 * 125.80204 * 179.67146 * 2 1 3 13 13 C 1.47375 * 127.19255 * 0.02562 * 12 2 1 14 14 O 1.21616 * 120.00211 * 359.97438 * 13 12 2 15 15 N 1.34782 * 120.00230 * 180.02562 * 13 12 2 16 16 C 1.46501 * 120.00435 * 180.02562 * 15 13 12 17 17 H 1.09004 * 109.46892 * 34.98997 * 16 15 13 18 18 C 1.53008 * 109.46611 * 274.99790 * 16 15 13 19 19 C 1.50688 * 109.47387 * 154.99642 * 16 15 13 20 20 H 1.08004 * 120.00102 * 0.02562 * 19 16 15 21 21 C 1.37883 * 120.00120 * 179.97438 * 19 16 15 22 22 N 1.31509 * 119.99515 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 120.00036 * 180.02562 * 21 19 16 24 24 H 1.48498 * 109.47488 * 59.99846 * 23 21 19 25 25 H 1.48501 * 109.47084 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46867 * 299.99335 * 23 21 19 27 27 H 1.09006 * 109.46855 * 270.32380 * 1 2 3 28 28 H 1.09001 * 109.47361 * 30.32160 * 1 2 3 29 29 H 1.08997 * 109.46869 * 150.33098 * 1 2 3 30 30 H 1.09002 * 109.47391 * 179.97438 * 9 8 5 31 31 H 1.09001 * 109.46813 * 60.00003 * 9 8 5 32 32 H 1.09004 * 109.47041 * 300.00130 * 9 8 5 33 33 H 1.08999 * 109.47096 * 269.99806 * 10 8 5 34 34 H 1.09001 * 109.46763 * 30.00200 * 10 8 5 35 35 H 1.09005 * 109.46576 * 150.00183 * 10 8 5 36 36 H 1.07995 * 127.01979 * 180.23763 * 11 4 3 37 37 H 0.97004 * 119.99806 * 359.97438 * 15 13 12 38 38 H 1.08994 * 109.47238 * 59.99938 * 18 16 15 39 39 H 1.09002 * 109.46732 * 179.97438 * 18 16 15 40 40 H 1.08996 * 109.46866 * 299.99524 * 18 16 15 41 41 H 0.97002 * 119.99795 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0841 0.0000 4 6 3.5859 0.7391 -0.0029 5 16 4.9422 1.8639 -0.0077 6 8 6.0483 1.1609 0.5414 7 8 4.4528 3.0849 0.5298 8 7 5.3208 2.1684 -1.5908 9 6 4.6785 3.2797 -2.2970 10 6 6.2983 1.3265 -2.2851 11 6 3.6849 -0.5990 0.0043 12 6 2.3050 -1.1063 0.0063 13 6 1.8740 -2.5156 0.0139 14 8 0.6890 -2.7891 0.0154 15 7 2.7931 -3.5015 0.0202 16 6 2.3647 -4.9024 0.0271 17 1 1.4539 -5.0068 -0.5627 18 6 2.0938 -5.3457 1.4663 19 6 3.4497 -5.7625 -0.5676 20 1 4.3670 -5.3108 -0.9156 21 6 3.2719 -7.1262 -0.6666 22 7 2.1556 -7.6763 -0.2415 23 14 4.6173 -8.1925 -1.4032 24 1 5.8578 -8.0498 -0.5995 25 1 4.1829 -9.6125 -1.3962 26 1 4.8802 -7.7627 -2.8001 27 1 -0.3633 0.0058 1.0277 28 1 -0.3634 0.8871 -0.5188 29 1 -0.3633 -0.8929 -0.5087 30 1 5.0510 3.3237 -3.3204 31 1 4.9075 4.2152 -1.7867 32 1 3.5992 3.1271 -2.3090 33 1 7.2960 1.7460 -2.1559 34 1 6.2708 0.3193 -1.8692 35 1 6.0552 1.2879 -3.3470 36 1 4.5928 -1.1838 0.0079 37 1 3.7383 -3.2833 0.0193 38 1 1.3090 -4.7235 1.8964 39 1 1.7746 -6.3879 1.4714 40 1 3.0044 -5.2413 2.0561 41 1 2.0307 -8.6357 -0.3107 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084589218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:46 Heat of formation + Delta-G solvation = -91.388095 kcal Electronic energy + Delta-G solvation = -26488.556876 eV Core-core repulsion = 22497.799982 eV Total energy + Delta-G solvation = -3990.756894 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.71090 -38.75888 -37.64170 -36.57624 -36.21215 -34.93536 -33.25233 -32.47660 -32.02733 -29.10430 -28.50233 -27.22347 -25.30562 -25.10714 -23.61799 -21.89212 -20.75736 -19.81863 -19.20916 -18.61074 -17.83254 -16.72124 -16.50155 -16.40179 -15.92767 -15.35796 -15.21335 -14.82326 -14.77599 -14.22880 -14.03779 -13.69765 -13.59251 -13.27103 -13.08137 -13.00970 -12.89206 -12.65693 -12.46671 -12.44343 -12.27990 -12.12049 -11.94264 -11.76334 -11.59231 -11.14095 -11.00697 -10.81130 -10.38363 -10.27635 -10.10989 -9.59729 -9.30670 -9.12461 -9.02079 -8.60252 -7.99668 -6.16919 -4.26634 -0.13373 0.96980 1.60842 2.40256 2.75096 3.22848 3.28222 3.29166 3.31838 3.80212 3.95935 4.08813 4.31552 4.33132 4.49495 4.70321 4.88518 4.98396 5.03113 5.15543 5.19359 5.27836 5.39085 5.41047 5.42682 5.46741 5.49955 5.60210 5.91738 6.00304 6.10558 6.65554 6.78802 6.91656 7.09021 7.35709 7.49242 7.63737 7.85171 8.09067 8.56082 8.70408 8.99070 9.40743 10.89098 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.014814 B = 0.003330 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.706175 B = 8406.415302 C = 9623.053836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.109 3.891 3 O -0.126 6.126 4 C -0.591 4.591 5 S 2.725 3.275 6 O -0.930 6.930 7 O -0.938 6.938 8 N -1.000 6.000 9 C 0.088 3.912 10 C 0.088 3.912 11 C -0.052 4.052 12 C -0.245 4.245 13 C 0.574 3.426 14 O -0.551 6.551 15 N -0.698 5.698 16 C 0.265 3.735 17 H 0.051 0.949 18 C -0.148 4.148 19 C -0.537 4.537 20 H 0.061 0.939 21 C 0.067 3.933 22 N -0.883 5.883 23 Si 0.903 3.097 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.276 1.276 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.174 0.826 37 H 0.389 0.611 38 H 0.015 0.985 39 H 0.092 0.908 40 H 0.027 0.973 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.807 20.599 -4.310 21.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.052 3.948 3 O -0.020 6.020 4 C -0.719 4.719 5 S 2.808 3.192 6 O -0.921 6.921 7 O -0.928 6.928 8 N -0.841 5.841 9 C -0.057 4.057 10 C -0.057 4.057 11 C -0.074 4.074 12 C -0.251 4.251 13 C 0.360 3.640 14 O -0.432 6.432 15 N -0.345 5.345 16 C 0.164 3.836 17 H 0.069 0.931 18 C -0.206 4.206 19 C -0.575 4.575 20 H 0.079 0.921 21 C -0.136 4.136 22 N -0.520 5.520 23 Si 0.730 3.270 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.202 1.202 27 H 0.114 0.886 28 H 0.099 0.901 29 H 0.136 0.864 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.191 0.809 37 H 0.221 0.779 38 H 0.034 0.966 39 H 0.110 0.890 40 H 0.046 0.954 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.161 20.777 -3.598 21.493 hybrid contribution 0.854 -1.308 -0.697 1.711 sum 5.015 19.468 -4.295 20.558 Atomic orbital electron populations 1.20764 0.82797 1.05620 1.05031 1.23440 0.94770 0.83612 0.92935 1.83862 1.13777 1.33708 1.70687 1.35550 0.98643 1.12008 1.25653 1.01646 0.72386 0.72886 0.72312 1.93665 1.47382 1.75473 1.75542 1.93588 1.81194 1.42101 1.75956 1.57384 1.53494 1.40983 1.32225 1.21632 0.97564 0.88194 0.98296 1.21663 0.91485 0.94167 0.98423 1.23132 0.98565 0.92586 0.93104 1.21792 0.92086 0.95774 1.15398 1.17085 0.86308 0.83014 0.77634 1.90717 1.16486 1.83706 1.52252 1.46415 1.08414 1.08265 1.71375 1.18804 0.96790 0.73846 0.94165 0.93121 1.22090 0.97807 1.03501 0.97247 1.21161 1.02361 0.92105 1.41877 0.92087 1.24881 0.95897 0.97755 0.95076 1.69887 1.24732 1.11790 1.45615 0.86486 0.81663 0.79199 0.79620 1.20083 1.21081 1.20166 0.88644 0.90091 0.86414 0.89718 0.91049 0.91844 0.91633 0.90567 0.90403 0.80862 0.77897 0.96579 0.88984 0.95377 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.04 9.89 36.01 0.36 -0.68 16 2 C 0.11 1.62 7.37 -34.96 -0.26 1.36 16 3 O -0.13 -1.78 10.52 7.64 0.08 -1.70 16 4 C -0.59 -7.88 7.32 29.30 0.21 -7.66 16 5 S 2.73 31.44 5.80 -107.50 -0.62 30.82 16 6 O -0.93 -12.36 16.89 -57.17 -0.97 -13.32 16 7 O -0.94 -12.91 17.18 -57.29 -0.98 -13.89 16 8 N -1.00 -8.37 3.58 -129.19 -0.46 -8.83 16 9 C 0.09 0.56 10.30 59.85 0.62 1.18 16 10 C 0.09 0.57 10.26 59.85 0.61 1.19 16 11 C -0.05 -0.74 10.29 -37.45 -0.39 -1.13 16 12 C -0.25 -4.12 6.31 -103.28 -0.65 -4.77 16 13 C 0.57 11.73 7.78 -12.54 -0.10 11.63 16 14 O -0.55 -12.65 14.51 5.26 0.08 -12.57 16 15 N -0.70 -14.73 5.07 -56.02 -0.28 -15.01 16 16 C 0.27 6.70 2.56 -69.08 -0.18 6.52 16 17 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 18 C -0.15 -3.67 9.26 37.16 0.34 -3.33 16 19 C -0.54 -14.06 8.73 -34.44 -0.30 -14.36 16 20 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 21 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 22 N -0.88 -24.56 11.32 55.43 0.63 -23.94 16 23 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 27 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.12 1.62 6.48 -51.93 -0.34 1.28 16 30 H 0.08 0.33 7.79 -51.93 -0.40 -0.07 16 31 H 0.07 0.43 8.01 -51.93 -0.42 0.02 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.51 7.79 -51.93 -0.40 0.10 16 35 H 0.08 0.36 7.92 -51.93 -0.41 -0.05 16 36 H 0.17 2.04 7.74 -52.49 -0.41 1.63 16 37 H 0.39 7.14 7.71 -40.82 -0.31 6.83 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 363.08 15.07 5.47 5.47 Total: -1.00 -34.32 363.08 -7.38 -41.70 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -5.48 Total: 4.28 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 0.18 Total: -8.35 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.12 Total: -47.78 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -1.79 Total: -41.48 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 31.44 SS G_CDS: -0.62 Total: 30.82 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.32 -7.38 -41.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084589218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.685 kcal (2) G-P(sol) polarization free energy of solvation -34.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds