Wall clock time and date at job start Tue Mar 31 2020 05:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47468 * 2 1 4 4 N 1.46501 * 109.47275 * 180.02562 * 3 2 1 5 5 C 1.36849 * 119.99768 * 263.81394 * 4 3 2 6 6 H 1.07994 * 119.99994 * 142.91939 * 5 4 3 7 7 C 1.39029 * 119.99966 * 322.92587 * 5 4 3 8 8 N 1.31385 * 120.00126 * 339.49063 * 7 5 4 9 9 Si 1.86802 * 120.00000 * 159.49195 * 7 5 4 10 10 H 1.48506 * 109.47310 * 59.99662 * 9 7 5 11 11 H 1.48496 * 109.47015 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47224 * 300.00073 * 9 7 5 13 13 C 1.34776 * 119.99947 * 83.81357 * 4 3 2 14 14 O 1.21743 * 119.99289 * 184.45971 * 13 4 3 15 15 C 1.46514 * 120.00076 * 4.46027 * 13 4 3 16 16 C 1.36661 * 125.99152 * 174.59900 * 15 13 4 17 17 C 1.40337 * 106.70356 * 180.02562 * 16 15 13 18 18 C 1.35156 * 107.12240 * 359.97438 * 17 16 15 19 19 C 1.50703 * 125.60857 * 180.02562 * 18 17 16 20 20 N 1.46505 * 109.47259 * 90.00107 * 19 18 17 21 21 S 1.65596 * 120.00025 * 165.00206 * 20 19 18 22 22 C 1.81401 * 104.45203 * 64.99924 * 21 20 19 23 23 O 1.42102 * 104.27797 * 308.92604 * 21 20 19 24 24 O 1.42108 * 104.27542 * 181.06867 * 21 20 19 25 25 O 1.33958 * 108.78477 * 0.26225 * 18 17 16 26 26 H 1.09003 * 109.46884 * 59.99864 * 1 2 3 27 27 H 1.08994 * 109.47217 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46642 * 300.00203 * 1 2 3 29 29 H 1.08998 * 109.46642 * 239.99797 * 2 1 3 30 30 H 1.09003 * 109.46884 * 120.00136 * 2 1 3 31 31 H 1.09004 * 109.47108 * 59.99542 * 3 2 1 32 32 H 1.09003 * 109.47179 * 299.99956 * 3 2 1 33 33 H 0.96995 * 119.99779 * 180.02562 * 8 7 5 34 34 H 1.08003 * 126.65194 * 359.97438 * 16 15 13 35 35 H 1.07999 * 126.43652 * 180.02562 * 17 16 15 36 36 H 1.08999 * 109.47285 * 330.00360 * 19 18 17 37 37 H 1.09005 * 109.47355 * 210.00023 * 19 18 17 38 38 H 0.96999 * 119.99682 * 344.99739 * 20 19 18 39 39 H 1.09000 * 109.46918 * 299.99945 * 22 21 20 40 40 H 1.08997 * 109.46761 * 59.99512 * 22 21 20 41 41 H 1.08999 * 109.46922 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1898 1.5699 1.1774 6 1 5.1060 1.0194 1.3317 7 6 3.7059 2.4080 2.1755 8 7 2.8554 3.3636 1.8758 9 14 4.2648 2.1755 3.9427 10 1 5.7389 2.3381 4.0212 11 1 3.6088 3.1895 4.8068 12 1 3.8918 0.8146 4.4049 13 6 4.1785 1.3167 -1.1613 14 8 5.3932 1.2350 -1.1545 15 6 3.4487 1.2785 -2.4312 16 6 4.0074 1.2593 -3.6783 17 6 2.9457 1.2246 -4.5954 18 6 1.8002 1.2236 -3.8781 19 6 0.4065 1.1911 -4.4506 20 7 -0.0252 -0.2003 -4.6061 21 16 -1.6248 -0.5478 -4.8569 22 6 -2.0000 0.1878 -6.4720 23 8 -2.3018 0.1511 -3.8213 24 8 -1.6675 -1.9662 -4.9329 25 8 2.1073 1.2616 -2.5748 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 2.5181 3.9485 2.5722 34 1 5.0616 1.2696 -3.9127 35 1 3.0285 1.2020 -5.6719 36 1 0.4014 1.6838 -5.4228 37 1 -0.2754 1.7099 -3.7767 38 1 0.6259 -0.9179 -4.5622 39 1 -1.8182 1.2619 -6.4332 40 1 -1.3618 -0.2614 -7.2329 41 1 -3.0456 0.0054 -6.7202 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084752978.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:05 Heat of formation + Delta-G solvation = -81.375363 kcal Electronic energy + Delta-G solvation = -27120.687598 eV Core-core repulsion = 23130.364888 eV Total energy + Delta-G solvation = -3990.322710 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.27625 -38.36823 -37.34527 -36.19234 -35.69063 -35.43358 -32.86131 -32.55951 -31.29552 -29.94696 -29.79084 -26.56468 -25.64796 -24.41023 -21.77698 -21.20514 -20.72314 -19.75392 -19.52123 -18.04075 -17.29280 -16.91164 -16.50614 -16.42278 -15.74899 -15.44704 -14.96939 -14.63262 -14.40371 -14.17590 -13.83291 -13.64840 -13.54611 -13.42072 -13.29549 -12.66830 -12.58290 -12.54519 -12.34864 -12.31028 -12.20228 -11.79334 -11.66844 -11.42933 -11.32037 -11.26604 -10.94437 -10.67689 -10.41446 -10.31599 -9.94146 -9.85796 -9.57946 -9.02083 -8.82114 -8.17350 -7.58907 -6.47728 -4.08369 -0.04627 1.56509 2.40851 2.81471 3.10285 3.17037 3.20569 3.24666 3.56017 3.90017 4.02254 4.22343 4.36842 4.51734 4.61847 4.72486 4.92356 5.01333 5.10598 5.26402 5.27237 5.48666 5.55151 5.73173 5.81817 6.02303 6.11193 6.17288 6.20416 6.45283 6.51562 6.56248 6.68282 6.71994 6.77036 6.98390 7.24435 7.38882 7.47259 8.12305 8.36714 8.99686 9.21512 9.81779 10.55243 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.017968 B = 0.003584 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.981639 B = 7809.961696 C = 8819.318775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.098 3.902 4 N -0.411 5.411 5 C -0.312 4.312 6 H 0.098 0.902 7 C 0.041 3.959 8 N -0.856 5.856 9 Si 0.924 3.076 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.270 1.270 13 C 0.513 3.487 14 O -0.566 6.566 15 C -0.006 4.006 16 C -0.174 4.174 17 C -0.186 4.186 18 C -0.050 4.050 19 C 0.202 3.798 20 N -1.116 6.116 21 S 2.614 3.386 22 C -0.675 4.675 23 O -0.950 6.950 24 O -0.958 6.958 25 O -0.142 6.142 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.273 0.727 34 H 0.153 0.847 35 H 0.147 0.853 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.423 0.577 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.884 -3.501 -15.518 19.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C -0.025 4.025 4 N -0.127 5.127 5 C -0.440 4.440 6 H 0.115 0.885 7 C -0.165 4.165 8 N -0.492 5.492 9 Si 0.750 3.250 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.196 1.196 13 C 0.301 3.699 14 O -0.451 6.451 15 C -0.060 4.060 16 C -0.195 4.195 17 C -0.206 4.206 18 C -0.103 4.103 19 C 0.076 3.924 20 N -0.877 5.877 21 S 2.705 3.295 22 C -0.825 4.825 23 O -0.940 6.940 24 O -0.948 6.948 25 O -0.037 6.037 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.128 0.872 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.170 0.830 35 H 0.165 0.835 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.258 0.742 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.351 -3.673 -14.541 18.809 hybrid contribution 0.745 0.143 -0.071 0.762 sum -10.606 -3.530 -14.612 18.398 Atomic orbital electron populations 1.21648 0.95909 1.00792 1.01749 1.21894 0.95288 0.98595 1.01381 1.21897 0.81039 0.95221 1.04348 1.43516 1.05334 1.59057 1.04755 1.19501 1.09406 1.25166 0.89904 0.88482 1.25482 0.96760 0.93339 1.00938 1.69919 1.30743 1.14288 1.34286 0.86034 0.79346 0.78348 0.81284 1.19457 1.20749 1.19560 1.16934 0.86351 0.85583 0.81014 1.90707 1.12123 1.57151 1.85167 1.23209 0.79309 1.05813 0.97659 1.21758 1.00574 1.06543 0.90652 1.21453 0.91322 1.07638 1.00213 1.22191 0.95835 1.09641 0.82647 1.19546 0.90303 0.82315 1.00224 1.55723 1.28242 1.14063 1.89647 1.04781 0.73164 0.74491 0.77027 1.30557 1.12110 1.14593 1.25206 1.93647 1.73097 1.75609 1.51648 1.93631 1.85326 1.28178 1.87652 1.84468 1.24303 1.69732 1.25182 0.92715 0.93472 0.92865 0.93206 0.92055 0.87218 0.91499 0.91688 0.82952 0.83480 0.89014 0.88363 0.74206 0.85305 0.85215 0.85378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.91 37.16 0.37 -2.03 16 2 C -0.13 -2.62 5.80 -26.73 -0.16 -2.78 16 3 C 0.10 2.23 4.50 -4.04 -0.02 2.21 16 4 N -0.41 -10.65 2.53 -116.35 -0.29 -10.94 16 5 C -0.31 -8.57 8.94 -15.02 -0.13 -8.70 16 6 H 0.10 2.75 7.71 -52.49 -0.40 2.35 16 7 C 0.04 1.07 4.92 -17.45 -0.09 0.98 16 8 N -0.86 -22.62 11.46 55.50 0.64 -21.98 16 9 Si 0.92 20.11 29.60 -169.99 -5.03 15.07 16 10 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 11 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 12 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 13 C 0.51 13.14 7.54 -12.93 -0.10 13.04 16 14 O -0.57 -16.07 16.71 5.15 0.09 -15.98 16 15 C -0.01 -0.12 6.59 -36.82 -0.24 -0.36 16 16 C -0.17 -3.08 10.63 -39.36 -0.42 -3.50 16 17 C -0.19 -2.51 10.77 -39.89 -0.43 -2.94 16 18 C -0.05 -0.69 6.71 -35.40 -0.24 -0.93 16 19 C 0.20 1.86 6.66 -5.19 -0.03 1.83 16 20 N -1.12 -9.58 5.88 -11.65 -0.07 -9.65 16 21 S 2.61 21.84 6.10 -107.50 -0.66 21.19 16 22 C -0.68 -2.68 10.89 101.05 1.10 -1.58 16 23 O -0.95 -11.75 17.50 -57.54 -1.01 -12.75 16 24 O -0.96 -11.46 18.08 -57.54 -1.04 -12.50 16 25 O -0.14 -2.59 6.21 4.90 0.03 -2.56 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.05 0.98 7.22 -51.93 -0.37 0.60 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.11 2.68 5.54 -51.93 -0.29 2.40 16 32 H 0.07 1.48 5.29 -51.93 -0.27 1.20 16 33 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 34 H 0.15 2.61 8.06 -52.48 -0.42 2.18 16 35 H 0.15 1.44 8.06 -52.49 -0.42 1.01 16 36 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.10 0.94 7.69 -51.93 -0.40 0.54 16 38 H 0.42 3.62 8.61 -34.47 -0.30 3.32 16 39 H 0.13 0.33 8.14 -51.92 -0.42 -0.10 16 40 H 0.13 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.13 0.38 8.14 -51.92 -0.42 -0.04 16 LS Contribution 360.87 15.07 5.44 5.44 Total: -1.00 -36.30 360.87 -7.69 -44.00 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -5.40 Total: 5.43 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -0.38 Total: -4.76 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.27 Total: -42.58 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -1.93 Total: -43.79 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.03 Total: 15.07 kcal Atomic # 16 Polarization: 21.84 SS G_CDS: -0.66 Total: 21.19 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.30 -7.69 -44.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084752978.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.380 kcal (2) G-P(sol) polarization free energy of solvation -36.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds