Wall clock time and date at job start Tue Mar 31 2020 05:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33930 * 125.61642 * 2 1 4 4 C 1.34918 * 109.38624 * 180.27037 * 3 2 1 5 5 C 1.46654 * 125.99103 * 179.74664 * 4 3 2 6 6 O 1.21692 * 120.00223 * 173.24453 * 5 4 3 7 7 N 1.34780 * 119.99504 * 353.24185 * 5 4 3 8 8 C 1.46493 * 120.00497 * 3.37908 * 7 5 4 9 9 C 1.46510 * 119.99632 * 183.37783 * 7 5 4 10 10 C 1.50695 * 109.46920 * 90.00060 * 9 7 5 11 11 H 1.08001 * 120.00502 * 359.97438 * 10 9 7 12 12 C 1.37881 * 120.00044 * 179.97438 * 10 9 7 13 13 N 1.31518 * 119.99857 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00233 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46939 * 90.00063 * 14 12 10 16 16 H 1.48504 * 109.47093 * 209.99967 * 14 12 10 17 17 H 1.48504 * 109.47012 * 329.99998 * 14 12 10 18 18 C 1.36551 * 108.02178 * 359.76364 * 4 3 2 19 19 C 1.35133 * 125.61937 * 179.87040 * 2 1 3 20 20 S 1.76201 * 126.43976 * 359.97438 * 19 2 1 21 21 O 1.42096 * 106.40154 * 181.17304 * 20 19 2 22 22 O 1.42107 * 106.39667 * 48.25773 * 20 19 2 23 23 N 1.65598 * 107.22191 * 294.71674 * 20 19 2 24 24 C 1.46504 * 119.99784 * 89.99994 * 23 20 19 25 25 C 1.46494 * 120.00217 * 269.72131 * 23 20 19 26 26 H 1.08994 * 109.47001 * 270.12772 * 1 2 3 27 27 H 1.09004 * 109.47064 * 30.13253 * 1 2 3 28 28 H 1.09000 * 109.46694 * 150.12755 * 1 2 3 29 29 H 1.08999 * 109.47422 * 84.00826 * 8 7 5 30 30 H 1.08998 * 109.47562 * 204.01179 * 8 7 5 31 31 H 1.09002 * 109.46854 * 324.00897 * 8 7 5 32 32 H 1.09003 * 109.46861 * 210.00337 * 9 7 5 33 33 H 1.09000 * 109.47084 * 330.00389 * 9 7 5 34 34 H 0.96997 * 119.99885 * 179.97438 * 13 12 10 35 35 H 1.07994 * 126.64280 * 180.02562 * 18 4 3 36 36 H 1.09004 * 109.46688 * 179.72970 * 24 23 20 37 37 H 1.09000 * 109.46854 * 299.72242 * 24 23 20 38 38 H 1.08994 * 109.47624 * 59.72591 * 24 23 20 39 39 H 1.08999 * 109.47454 * 270.28022 * 25 23 20 40 40 H 1.09006 * 109.46855 * 30.27952 * 25 23 20 41 41 H 1.09003 * 109.47126 * 150.27112 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2869 1.0888 0.0000 4 6 3.5823 0.7117 -0.0060 5 6 4.7414 1.6101 -0.0132 6 8 5.8641 1.1559 0.1057 7 7 4.5632 2.9389 -0.1517 8 6 3.2088 3.4931 -0.2206 9 6 5.7239 3.8291 -0.2333 10 6 6.1342 3.9887 -1.6745 11 1 5.5855 3.4778 -2.4520 12 6 7.2100 4.7869 -2.0007 13 7 7.8785 5.4087 -1.0540 14 14 7.7182 4.9854 -3.7873 15 1 6.9983 6.1404 -4.3812 16 1 9.1822 5.2229 -3.8621 17 1 7.3781 3.7504 -4.5387 18 6 3.6250 -0.6532 -0.0046 19 6 2.2940 -1.0985 0.0025 20 16 1.7512 -2.7748 0.0069 21 8 2.9242 -3.5763 0.0364 22 8 0.7638 -2.8794 -1.0097 23 7 0.9715 -3.0339 1.4447 24 6 -0.4701 -2.7948 1.5496 25 6 1.7221 -3.5080 2.6100 26 1 -0.3633 0.0023 1.0276 27 1 -0.3633 0.8888 -0.5159 28 1 -0.3633 -0.8911 -0.5119 29 1 2.8232 3.6366 0.7888 30 1 3.2342 4.4513 -0.7394 31 1 2.5613 2.8036 -0.7623 32 1 5.4643 4.8034 0.1807 33 1 6.5503 3.4015 0.3345 34 1 8.6356 5.9699 -1.2834 35 1 4.5113 -1.2703 -0.0078 36 1 -0.8033 -3.0226 2.5622 37 1 -0.6824 -1.7498 1.3237 38 1 -0.9970 -3.4340 0.8412 39 1 1.7268 -4.5980 2.6204 40 1 2.7470 -3.1408 2.5560 41 1 1.2511 -3.1379 3.5207 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084753613.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:13 Heat of formation + Delta-G solvation = -76.677124 kcal Electronic energy + Delta-G solvation = -26789.265279 eV Core-core repulsion = 22799.146300 eV Total energy + Delta-G solvation = -3990.118979 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.94095 -38.84397 -37.47823 -36.56662 -36.02257 -35.18328 -33.69662 -32.67765 -32.25048 -28.74593 -28.30854 -27.16958 -25.85538 -25.05282 -23.58003 -22.51149 -21.54452 -20.10595 -18.96547 -17.76338 -17.42233 -16.85107 -16.51584 -16.33566 -16.18146 -15.50350 -15.42427 -14.83295 -14.73652 -14.42226 -14.29734 -13.86121 -13.58307 -13.40050 -13.35844 -12.95132 -12.81651 -12.66683 -12.57126 -12.35233 -12.21623 -12.19711 -12.01412 -11.85322 -11.80041 -11.47899 -11.23458 -10.95375 -10.65943 -10.57154 -10.23880 -9.74627 -9.54019 -9.47005 -8.76304 -8.50091 -7.82415 -6.11341 -4.17048 0.14567 0.96311 1.68648 2.43898 2.75402 3.27401 3.34272 3.38473 3.49294 3.56935 3.75566 3.99874 4.24106 4.35210 4.40291 4.66184 4.78804 4.80485 4.96525 5.00441 5.12098 5.17486 5.24178 5.30571 5.35552 5.43198 5.46071 5.53752 5.60337 5.75970 5.84931 6.10171 6.11222 6.19710 6.54249 6.93556 7.27524 7.37135 7.84000 8.11864 8.15108 8.66167 8.88864 9.48399 10.96791 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.023604 B = 0.002958 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.969955 B = 9462.867227 C = 9651.791377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.131 3.869 3 O -0.142 6.142 4 C -0.052 4.052 5 C 0.585 3.415 6 O -0.514 6.514 7 N -0.586 5.586 8 C 0.079 3.921 9 C 0.244 3.756 10 C -0.533 4.533 11 H 0.059 0.941 12 C 0.063 3.937 13 N -0.893 5.893 14 Si 0.901 3.099 15 H -0.280 1.280 16 H -0.284 1.284 17 H -0.273 1.273 18 C -0.060 4.060 19 C -0.772 4.772 20 S 2.723 3.277 21 O -0.949 6.949 22 O -0.954 6.954 23 N -1.007 6.007 24 C 0.079 3.921 25 C 0.092 3.908 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.112 0.888 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.038 0.962 33 H 0.049 0.951 34 H 0.265 0.735 35 H 0.174 0.826 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.304 -13.748 8.305 26.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.074 3.926 3 O -0.036 6.036 4 C -0.104 4.104 5 C 0.370 3.630 6 O -0.392 6.392 7 N -0.317 5.317 8 C -0.065 4.065 9 C 0.126 3.874 10 C -0.571 4.571 11 H 0.077 0.923 12 C -0.140 4.140 13 N -0.532 5.532 14 Si 0.728 3.272 15 H -0.206 1.206 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.081 4.081 19 C -0.859 4.859 20 S 2.810 3.190 21 O -0.939 6.939 22 O -0.944 6.944 23 N -0.847 5.847 24 C -0.066 4.066 25 C -0.053 4.053 26 H 0.120 0.880 27 H 0.119 0.881 28 H 0.130 0.870 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.191 0.809 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.479 -14.048 7.775 26.023 hybrid contribution 0.455 0.899 -0.674 1.212 sum -20.024 -13.149 7.101 24.986 Atomic orbital electron populations 1.21137 0.84080 1.07073 1.04997 1.22598 0.94055 0.83634 0.92322 1.84357 1.16978 1.33709 1.68547 1.22950 0.81258 0.95038 1.11172 1.16591 0.85289 0.81942 0.79161 1.90875 1.21810 1.75354 1.51166 1.48155 1.09081 1.05897 1.68538 1.21865 0.83353 1.00370 1.00900 1.19455 0.82190 0.87857 0.97933 1.21413 1.14499 1.28957 0.92276 0.92292 1.24936 0.95786 0.95321 0.97925 1.69929 1.20294 1.30625 1.32309 0.86452 0.77827 0.78459 0.84456 1.20557 1.20956 1.19788 1.21423 0.95732 0.93118 0.97863 1.31760 1.02113 1.24022 1.27973 1.01174 0.72952 0.72743 0.72122 1.93582 1.48621 1.65912 1.85769 1.93564 1.60208 1.86215 1.54455 1.57379 1.16916 1.81432 1.28935 1.21823 0.79005 1.01692 1.04099 1.21577 0.96309 0.99966 0.87474 0.87967 0.88145 0.87012 0.93362 0.90019 0.91491 0.94378 0.93313 0.92554 0.80875 0.89854 0.91897 0.91111 0.92031 0.90588 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 8.83 36.01 0.32 -0.49 16 2 C 0.13 1.57 7.31 -35.41 -0.26 1.31 16 3 O -0.14 -2.09 7.29 4.99 0.04 -2.05 16 4 C -0.05 -0.94 6.77 -36.80 -0.25 -1.19 16 5 C 0.59 12.98 7.64 -12.86 -0.10 12.89 16 6 O -0.51 -13.22 16.43 5.20 0.09 -13.13 16 7 N -0.59 -12.88 2.86 -184.52 -0.53 -13.41 16 8 C 0.08 1.32 9.63 59.84 0.58 1.89 16 9 C 0.24 6.38 5.16 -5.19 -0.03 6.35 16 10 C -0.53 -15.13 9.39 -34.44 -0.32 -15.45 16 11 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 12 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 13 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 14 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 18 C -0.06 -0.99 10.33 -39.39 -0.41 -1.40 16 19 C -0.77 -10.35 6.18 -39.89 -0.25 -10.60 16 20 S 2.72 32.55 5.46 -107.50 -0.59 31.96 16 21 O -0.95 -14.19 16.86 -57.17 -0.96 -15.15 16 22 O -0.95 -12.52 15.68 -57.17 -0.90 -13.41 16 23 N -1.01 -8.08 3.58 -129.20 -0.46 -8.54 16 24 C 0.08 0.39 10.24 59.85 0.61 1.01 16 25 C 0.09 0.61 10.25 59.84 0.61 1.22 16 26 H 0.10 0.40 6.82 -51.93 -0.35 0.05 16 27 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.11 0.74 5.97 -51.93 -0.31 0.43 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 1.35 8.03 -51.93 -0.42 0.93 16 31 H 0.07 1.02 5.40 -51.93 -0.28 0.74 16 32 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 33 H 0.05 1.42 7.38 -51.93 -0.38 1.03 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.17 2.82 8.06 -52.49 -0.42 2.40 16 36 H 0.08 0.23 7.79 -51.93 -0.40 -0.17 16 37 H 0.06 0.23 4.43 -51.93 -0.23 0.00 16 38 H 0.07 0.35 8.00 -51.93 -0.42 -0.07 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.57 7.79 -51.93 -0.40 0.16 16 41 H 0.07 0.31 7.92 -51.93 -0.41 -0.10 16 LS Contribution 355.70 15.07 5.36 5.36 Total: -1.00 -37.03 355.70 -7.09 -44.12 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: -5.27 Total: -4.24 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 0.41 Total: -2.76 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -0.25 Total: -47.53 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -1.74 Total: -43.75 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 32.55 SS G_CDS: -0.59 Total: 31.96 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.03 -7.09 -44.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084753613.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.557 kcal (2) G-P(sol) polarization free energy of solvation -37.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds