Wall clock time and date at job start Tue Mar 31 2020 05:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33930 * 125.61642 * 2 1 4 4 C 1.34918 * 109.38624 * 180.27037 * 3 2 1 5 5 C 1.46654 * 125.99103 * 179.74664 * 4 3 2 6 6 O 1.21692 * 120.00223 * 173.24453 * 5 4 3 7 7 N 1.34780 * 119.99504 * 353.24185 * 5 4 3 8 8 C 1.46493 * 120.00497 * 3.37908 * 7 5 4 9 9 C 1.46510 * 119.99632 * 183.37783 * 7 5 4 10 10 C 1.50695 * 109.46920 * 90.00060 * 9 7 5 11 11 H 1.08001 * 120.00502 * 359.97438 * 10 9 7 12 12 C 1.37881 * 120.00044 * 179.97438 * 10 9 7 13 13 N 1.31518 * 119.99857 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00233 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46939 * 90.00063 * 14 12 10 16 16 H 1.48504 * 109.47093 * 209.99967 * 14 12 10 17 17 H 1.48504 * 109.47012 * 329.99998 * 14 12 10 18 18 C 1.36551 * 108.02178 * 359.76364 * 4 3 2 19 19 C 1.35133 * 125.61937 * 179.87040 * 2 1 3 20 20 S 1.76201 * 126.43976 * 359.97438 * 19 2 1 21 21 O 1.42096 * 106.40154 * 181.17304 * 20 19 2 22 22 O 1.42107 * 106.39667 * 48.25773 * 20 19 2 23 23 N 1.65598 * 107.22191 * 294.71674 * 20 19 2 24 24 C 1.46504 * 119.99784 * 89.99994 * 23 20 19 25 25 C 1.46494 * 120.00217 * 269.72131 * 23 20 19 26 26 H 1.08994 * 109.47001 * 270.12772 * 1 2 3 27 27 H 1.09004 * 109.47064 * 30.13253 * 1 2 3 28 28 H 1.09000 * 109.46694 * 150.12755 * 1 2 3 29 29 H 1.08999 * 109.47422 * 84.00826 * 8 7 5 30 30 H 1.08998 * 109.47562 * 204.01179 * 8 7 5 31 31 H 1.09002 * 109.46854 * 324.00897 * 8 7 5 32 32 H 1.09003 * 109.46861 * 210.00337 * 9 7 5 33 33 H 1.09000 * 109.47084 * 330.00389 * 9 7 5 34 34 H 0.96997 * 119.99885 * 179.97438 * 13 12 10 35 35 H 1.07994 * 126.64280 * 180.02562 * 18 4 3 36 36 H 1.09004 * 109.46688 * 179.72970 * 24 23 20 37 37 H 1.09000 * 109.46854 * 299.72242 * 24 23 20 38 38 H 1.08994 * 109.47624 * 59.72591 * 24 23 20 39 39 H 1.08999 * 109.47454 * 270.28022 * 25 23 20 40 40 H 1.09006 * 109.46855 * 30.27952 * 25 23 20 41 41 H 1.09003 * 109.47126 * 150.27112 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2869 1.0888 0.0000 4 6 3.5823 0.7117 -0.0060 5 6 4.7414 1.6101 -0.0132 6 8 5.8641 1.1559 0.1057 7 7 4.5632 2.9389 -0.1517 8 6 3.2088 3.4931 -0.2206 9 6 5.7239 3.8291 -0.2333 10 6 6.1342 3.9887 -1.6745 11 1 5.5855 3.4778 -2.4520 12 6 7.2100 4.7869 -2.0007 13 7 7.8785 5.4087 -1.0540 14 14 7.7182 4.9854 -3.7873 15 1 6.9983 6.1404 -4.3812 16 1 9.1822 5.2229 -3.8621 17 1 7.3781 3.7504 -4.5387 18 6 3.6250 -0.6532 -0.0046 19 6 2.2940 -1.0985 0.0025 20 16 1.7512 -2.7748 0.0069 21 8 2.9242 -3.5763 0.0364 22 8 0.7638 -2.8794 -1.0097 23 7 0.9715 -3.0339 1.4447 24 6 -0.4701 -2.7948 1.5496 25 6 1.7221 -3.5080 2.6100 26 1 -0.3633 0.0023 1.0276 27 1 -0.3633 0.8888 -0.5159 28 1 -0.3633 -0.8911 -0.5119 29 1 2.8232 3.6366 0.7888 30 1 3.2342 4.4513 -0.7394 31 1 2.5613 2.8036 -0.7623 32 1 5.4643 4.8034 0.1807 33 1 6.5503 3.4015 0.3345 34 1 8.6356 5.9699 -1.2834 35 1 4.5113 -1.2703 -0.0078 36 1 -0.8033 -3.0226 2.5622 37 1 -0.6824 -1.7498 1.3237 38 1 -0.9970 -3.4340 0.8412 39 1 1.7268 -4.5980 2.6204 40 1 2.7470 -3.1408 2.5560 41 1 1.2511 -3.1379 3.5207 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084753613.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:13 Heat of formation + Delta-G solvation = -105.331911 kcal Electronic energy + Delta-G solvation = -26790.507844 eV Core-core repulsion = 22799.146300 eV Total energy + Delta-G solvation = -3991.361544 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.11549 -40.57927 -38.48315 -37.18242 -36.99246 -36.94821 -35.00741 -34.58564 -33.31654 -30.32252 -29.03973 -28.38866 -27.41248 -25.73172 -25.25395 -23.69784 -22.84466 -21.56119 -19.86427 -18.95292 -18.79733 -18.53691 -17.85459 -17.48097 -17.24455 -16.97913 -16.68665 -16.31555 -15.98192 -15.49346 -15.37781 -14.86000 -14.55024 -14.50101 -14.38088 -14.22125 -13.98164 -13.95799 -13.59328 -13.48725 -13.40909 -13.20847 -13.17265 -13.05501 -12.87421 -12.64482 -12.60049 -12.43480 -12.40483 -12.28120 -11.80921 -11.71321 -11.31344 -10.69005 -10.14354 -9.97770 -9.58154 -8.28795 -6.44192 -0.75422 -0.21266 0.46223 1.25208 1.34622 1.37791 1.48280 1.89825 1.98806 2.16524 2.36416 2.58732 3.01012 3.03139 3.20803 3.58670 3.77298 3.88684 4.13160 4.23975 4.36461 4.41363 4.42858 4.54824 4.55798 4.62784 4.73195 4.79431 4.84038 4.94403 4.98340 5.00796 5.07029 5.11401 5.15701 5.36927 5.46149 5.56383 5.69897 5.95610 6.41976 6.62469 6.98527 7.27166 8.78812 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.023604 B = 0.002958 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.969955 B = 9462.867227 C = 9651.791377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.163 3.837 3 O -0.141 6.141 4 C -0.083 4.083 5 C 0.580 3.420 6 O -0.569 6.569 7 N -0.594 5.594 8 C 0.076 3.924 9 C 0.258 3.742 10 C -0.552 4.552 11 H 0.052 0.948 12 C 0.012 3.988 13 N -0.924 5.924 14 Si 0.969 3.031 15 H -0.261 1.261 16 H -0.278 1.278 17 H -0.276 1.276 18 C -0.056 4.056 19 C -0.790 4.790 20 S 2.737 3.263 21 O -0.986 6.986 22 O -0.966 6.966 23 N -0.997 5.997 24 C 0.064 3.936 25 C 0.081 3.919 26 H 0.144 0.856 27 H 0.123 0.877 28 H 0.120 0.880 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.036 0.964 33 H 0.007 0.993 34 H 0.270 0.730 35 H 0.162 0.838 36 H 0.112 0.888 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.039 -13.989 8.316 29.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.106 3.894 3 O -0.035 6.035 4 C -0.134 4.134 5 C 0.368 3.632 6 O -0.451 6.451 7 N -0.323 5.323 8 C -0.065 4.065 9 C 0.138 3.862 10 C -0.590 4.590 11 H 0.070 0.930 12 C -0.187 4.187 13 N -0.563 5.563 14 Si 0.793 3.207 15 H -0.185 1.185 16 H -0.203 1.203 17 H -0.201 1.201 18 C -0.077 4.077 19 C -0.875 4.875 20 S 2.823 3.177 21 O -0.977 6.977 22 O -0.956 6.956 23 N -0.839 5.839 24 C -0.080 4.080 25 C -0.063 4.063 26 H 0.162 0.838 27 H 0.142 0.858 28 H 0.138 0.862 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.054 0.946 33 H 0.025 0.975 34 H 0.079 0.921 35 H 0.180 0.820 36 H 0.131 0.869 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -24.266 -14.260 7.783 29.202 hybrid contribution 1.433 0.869 -0.572 1.771 sum -22.833 -13.391 7.211 27.435 Atomic orbital electron populations 1.21619 0.79664 1.08627 1.08052 1.23664 0.95963 0.82176 0.87634 1.84303 1.15565 1.34545 1.69097 1.21920 0.81722 0.94224 1.15584 1.17016 0.86060 0.82192 0.77971 1.90819 1.24387 1.76381 1.53543 1.48138 1.09979 1.05751 1.68465 1.22115 0.80835 1.00545 1.03006 1.18960 0.82827 0.87993 0.96417 1.21658 1.15129 1.29221 0.93031 0.92996 1.25836 0.95567 0.94784 1.02557 1.70035 1.20716 1.31067 1.34494 0.85390 0.77732 0.78706 0.78836 1.18532 1.20317 1.20070 1.21515 0.97163 0.92720 0.96323 1.31986 1.00695 1.25568 1.29214 1.00663 0.72231 0.71903 0.72917 1.93532 1.50671 1.66739 1.86725 1.93538 1.60055 1.86105 1.55893 1.57137 1.18123 1.80835 1.27838 1.22213 0.76646 1.02986 1.06136 1.21811 0.95903 1.00586 0.88019 0.83819 0.85807 0.86189 0.90560 0.89950 0.89638 0.94588 0.97496 0.92119 0.82005 0.86909 0.90136 0.90994 0.91342 0.92094 0.87535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 8.83 71.24 0.63 -0.45 16 2 C 0.16 3.43 7.31 24.97 0.18 3.61 16 3 O -0.14 -3.89 7.29 -5.07 -0.04 -3.93 16 4 C -0.08 -3.04 6.77 24.07 0.16 -2.88 16 5 C 0.58 27.02 7.64 86.44 0.66 27.68 16 6 O -0.57 -31.49 16.43 -4.32 -0.07 -31.56 16 7 N -0.59 -26.98 2.86 -855.91 -2.45 -29.43 16 8 C 0.08 2.50 9.63 127.77 1.23 3.73 16 9 C 0.26 14.18 5.16 85.63 0.44 14.62 16 10 C -0.55 -32.34 9.39 25.60 0.24 -32.10 16 11 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 12 C 0.01 0.71 5.46 84.65 0.46 1.18 16 13 N -0.92 -55.69 13.29 21.45 0.28 -55.41 16 14 Si 0.97 45.24 29.54 68.60 2.03 47.27 16 15 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 17 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 18 C -0.06 -1.89 10.33 22.39 0.23 -1.66 16 19 C -0.79 -20.25 6.18 22.07 0.14 -20.11 16 20 S 2.74 61.93 5.46 -56.49 -0.31 61.62 16 21 O -0.99 -29.85 16.86 -128.00 -2.16 -32.01 16 22 O -0.97 -23.44 15.68 -128.00 -2.01 -25.45 16 23 N -1.00 -13.23 3.58 -562.68 -2.02 -15.25 16 24 C 0.06 0.36 10.24 127.77 1.31 1.67 16 25 C 0.08 0.90 10.25 127.77 1.31 2.21 16 26 H 0.14 0.19 6.82 -2.39 -0.02 0.17 16 27 H 0.12 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.12 0.99 5.97 -2.39 -0.01 0.98 16 29 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.08 2.66 8.03 -2.39 -0.02 2.64 16 31 H 0.09 2.47 5.40 -2.39 -0.01 2.46 16 32 H 0.04 1.95 8.07 -2.39 -0.02 1.94 16 33 H 0.01 0.43 7.38 -2.39 -0.02 0.41 16 34 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 35 H 0.16 5.71 8.06 -2.91 -0.02 5.68 16 36 H 0.11 0.03 7.79 -2.38 -0.02 0.01 16 37 H 0.08 0.15 4.43 -2.39 -0.01 0.14 16 38 H 0.07 0.43 8.00 -2.39 -0.02 0.41 16 39 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.06 0.87 7.79 -2.38 -0.02 0.85 16 41 H 0.11 0.49 7.92 -2.39 -0.02 0.47 16 Total: -1.00 -85.75 355.70 1.32 -84.42 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: 1.06 Total: 2.20 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 7.00 Total: -2.50 kcal Atomic # 7 Polarization: -95.90 SS G_CDS: -4.18 Total: -100.08 kcal Atomic # 8 Polarization: -88.66 SS G_CDS: -4.27 Total: -92.94 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 16 Polarization: 61.93 SS G_CDS: -0.31 Total: 61.62 kcal Total: -85.75 1.32 -84.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084753613.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.909 kcal (2) G-P(sol) polarization free energy of solvation -85.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds